Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:17:48 (92715): wrapper (7.7.26015): starting
10:17:48 (92715): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 10:17:48] Arguments: --nthreads 8
[2025-06-04 10:17:48] Threads: 8
[2025-06-04 10:17:48] Checking for CVMFS
[2025-06-04 10:17:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 10:17:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 10:17:48] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 10:17:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 10:17:48] 2.11.2.0 10304 12757 339748 146781 2 841 13862326 18432001 17098 130560 0 110832370 99.329 147777996 50496 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 10:17:48] CVMFS is ok
[2025-06-04 10:17:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 10:17:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 10:17:48] Further information can be found at the LHC@home message board.
[2025-06-04 10:17:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 10:17:48] Checking for apptainer binary...
[2025-06-04 10:17:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 10:17:48] Running /usr/bin/apptainer --version
[2025-06-04 10:17:49] apptainer version 1.3.2-1.el7
[2025-06-04 10:17:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 10:17:50] c-212-11.aglt2.org
[2025-06-04 10:17:50] apptainer works
[2025-06-04 10:17:50] Set ATHENA_PROC_NUMBER=8
[2025-06-04 10:17:50] Set ATHENA_CORE_NUMBER=8
[2025-06-04 10:17:50] Starting ATLAS job with PandaID=6666805817
[2025-06-04 10:17:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 11:54:57]  *** The last 200 lines of the pilot log: ***
[2025-06-04 11:54:57]  is_tar=False
[2025-06-04 11:54:57]  lfn=log.44871837._063291.job.log.tgz.1
[2025-06-04 11:54:57]  mtime=0
[2025-06-04 11:54:57]  protocol_id=None
[2025-06-04 11:54:57]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 11:54:57]  replicas=None
[2025-06-04 11:54:57]  scope=mc23_13p6TeV
[2025-06-04 11:54:57]  status=None
[2025-06-04 11:54:57]  status_code=0
[2025-06-04 11:54:57]  storage_token=
[2025-06-04 11:54:57]  surl=/tmp/boinchome/slots/5/PanDA_Pilot-6666805817/log.44871837._063291.job.log.tgz.1
[2025-06-04 11:54:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0f/5a/log.44871837._063291.job.log.tgz.1
[2025-06-04 11:54:57]  workdir=None
[2025-06-04 11:54:57] ]
[2025-06-04 11:54:57] 2025-06-04 15:54:33,162 | INFO     | transferring file log.44871837._063291.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6666805817/log.44871837._063291.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 11:54:57] 2025-06-04 15:54:33,163 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6666805817/log.44871837._063291.job.log.tgz.1 /tmp/boinchome/slots/5/log.44871837._063291.job
[2025-06-04 11:54:57] 2025-06-04 15:54:33,179 | INFO     | adding to output.list: log.44871837._063291.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0f/5a/log.44871837._063291.job.log.tg
[2025-06-04 11:54:57] 2025-06-04 15:54:33,180 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 11:54:57] 2025-06-04 15:54:33,180 | INFO     | summary of transferred files:
[2025-06-04 11:54:57] 2025-06-04 15:54:33,180 | INFO     |  -- lfn=log.44871837._063291.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 11:54:57] 2025-06-04 15:54:33,180 | INFO     | stage-out finished correctly
[2025-06-04 11:54:57] 2025-06-04 15:54:33,740 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 11:54:57] 2025-06-04 15:54:34,982 | INFO     | job 6666805817 has state=finished
[2025-06-04 11:54:57] 2025-06-04 15:54:34,982 | INFO     | preparing for final server update for job 6666805817 in state='finished'
[2025-06-04 11:54:57] 2025-06-04 15:54:35,107 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-06-04 11:54:57] 2025-06-04 15:54:35,107 | INFO     | this job has now completed (state=finished)
[2025-06-04 11:54:57] 2025-06-04 15:54:35,107 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 11:54:57] 2025-06-04 15:54:35,107 | INFO     | log transfer has been attempted: DONE
[2025-06-04 11:54:57] 2025-06-04 15:54:35,107 | INFO     | job 6666805817 has finished - writing final server update
[2025-06-04 11:54:57] 2025-06-04 15:54:35,108 | INFO     | total number of processed events: 400 (read)
[2025-06-04 11:54:57] 2025-06-04 15:54:35,112 | INFO     | executing command: lscpu
[2025-06-04 11:54:57] 2025-06-04 15:54:35,152 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 11:54:57] 2025-06-04 15:54:36,869 | INFO     | PID=4273 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-04 11:54:57] 2025-06-04 15:54:36,869 | INFO     | .. there are 23 such processes running
[2025-06-04 11:54:57] 2025-06-04 15:54:37,748 | WARNING  | process 20610 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 11:54:57] 2025-06-04 15:54:37,748 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6666805817/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 11:54:57] 2025-06-04 15:54:37,952 | INFO     | number of running child processes to parent process 20610: 1
[2025-06-04 11:54:57] 2025-06-04 15:54:37,952 | INFO     | maximum number of monitored processes: 6
[2025-06-04 11:54:57] 2025-06-04 15:54:38,159 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 11:54:57] 2025-06-04 15:54:38,159 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6666805817/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 11:54:57] 2025-06-04 15:54:38,160 | INFO     | extracted standard info from prmon json
[2025-06-04 11:54:57] 2025-06-04 15:54:38,160 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 11:54:57] 2025-06-04 15:54:38,160 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 11:54:57] 2025-06-04 15:54:38,160 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 11:54:57] 2025-06-04 15:54:38,160 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 11:54:57] 2025-06-04 15:54:38,161 | INFO     | fitting pss+swap vs Time
[2025-06-04 11:54:57] 2025-06-04 15:54:38,162 | INFO     | sum of square deviations: 211285822.0
[2025-06-04 11:54:57] 2025-06-04 15:54:38,162 | INFO     | sum of deviations: 303819345.00000006
[2025-06-04 11:54:57] 2025-06-04 15:54:38,162 | INFO     | mean x: 1749049674.5
[2025-06-04 11:54:57] 2025-06-04 15:54:38,162 | INFO     | mean y: 2492316.2045454546
[2025-06-04 11:54:57] 2025-06-04 15:54:38,162 | INFO     | -- intersect: -2512561090.8293314
[2025-06-04 11:54:57] 2025-06-04 15:54:38,162 | INFO     | intersect: -2512561090.8293314
[2025-06-04 11:54:57] 2025-06-04 15:54:38,162 | INFO     | chi2: 0.001932856710439083
[2025-06-04 11:54:57] 2025-06-04 15:54:38,162 | INFO     | -- intersect: -2512561090.8293314
[2025-06-04 11:54:57] 2025-06-04 15:54:38,162 | INFO     | current memory leak: 1.44 B/s (using 88 data points, chi2=0.00)
[2025-06-04 11:54:57] 2025-06-04 15:54:38,163 | INFO     | ..............................
[2025-06-04 11:54:57] 2025-06-04 15:54:38,163 | INFO     | . Timing measurements:
[2025-06-04 11:54:57] 2025-06-04 15:54:38,163 | INFO     | . get job = 0 s
[2025-06-04 11:54:57] 2025-06-04 15:54:38,163 | INFO     | . initial setup = 2 s
[2025-06-04 11:54:57] 2025-06-04 15:54:38,163 | INFO     | . payload setup = 9 s
[2025-06-04 11:54:57] 2025-06-04 15:54:38,163 | INFO     | . stage-in = 0 s
[2025-06-04 11:54:57] 2025-06-04 15:54:38,163 | INFO     | . payload execution = 5759 s
[2025-06-04 11:54:57] 2025-06-04 15:54:38,163 | INFO     | . stage-out = 0 s
[2025-06-04 11:54:57] 2025-06-04 15:54:38,163 | INFO     | . log creation = 0 s
[2025-06-04 11:54:57] 2025-06-04 15:54:38,163 | INFO     | ..............................
[2025-06-04 11:54:57] 2025-06-04 15:54:38,216 | INFO     | 
[2025-06-04 11:54:57] 2025-06-04 15:54:38,216 | INFO     | job summary report
[2025-06-04 11:54:57] 2025-06-04 15:54:38,216 | INFO     | --------------------------------------------------
[2025-06-04 11:54:57] 2025-06-04 15:54:38,216 | INFO     | PanDA job id: 6666805817
[2025-06-04 11:54:57] 2025-06-04 15:54:38,216 | INFO     | task id: 44871837
[2025-06-04 11:54:57] 2025-06-04 15:54:38,216 | INFO     | errors: (none)
[2025-06-04 11:54:57] 2025-06-04 15:54:38,216 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 11:54:57] 2025-06-04 15:54:38,216 | INFO     | pilot state: finished 
[2025-06-04 11:54:57] 2025-06-04 15:54:38,216 | INFO     | transexitcode: 0
[2025-06-04 11:54:57] 2025-06-04 15:54:38,216 | INFO     | exeerrorcode: 0
[2025-06-04 11:54:57] 2025-06-04 15:54:38,216 | INFO     | exeerrordiag: 
[2025-06-04 11:54:57] 2025-06-04 15:54:38,216 | INFO     | exitcode: 0
[2025-06-04 11:54:57] 2025-06-04 15:54:38,216 | INFO     | exitmsg: OK
[2025-06-04 11:54:57] 2025-06-04 15:54:38,216 | INFO     | cpuconsumptiontime: 40468 s
[2025-06-04 11:54:57] 2025-06-04 15:54:38,216 | INFO     | nevents: 400
[2025-06-04 11:54:57] 2025-06-04 15:54:38,216 | INFO     | neventsw: 0
[2025-06-04 11:54:57] 2025-06-04 15:54:38,216 | INFO     | pid: 20610
[2025-06-04 11:54:57] 2025-06-04 15:54:38,216 | INFO     | pgrp: 20610
[2025-06-04 11:54:57] 2025-06-04 15:54:38,216 | INFO     | corecount: 8
[2025-06-04 11:54:57] 2025-06-04 15:54:38,216 | INFO     | event service: False
[2025-06-04 11:54:57] 2025-06-04 15:54:38,216 | INFO     | sizes: {0: 2397392, 1: 2397392, 6: 2397626, 11: 2397654, 5772: 2424136, 5773: 2433260, 5774: 2433260, 5778: 2433430}
[2025-06-04 11:54:57] 2025-06-04 15:54:38,216 | INFO     | --------------------------------------------------
[2025-06-04 11:54:57] 2025-06-04 15:54:38,216 | INFO     | 
[2025-06-04 11:54:57] 2025-06-04 15:54:38,216 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-06-04 11:54:57] 2025-06-04 15:54:38,231 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 11:54:57] 2025-06-04 15:54:38,231 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 11:54:57] 2025-06-04 15:54:38,231 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 11:54:57] 2025-06-04 15:54:38,231 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 11:54:57] 2025-06-04 15:54:38,231 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 11:54:57] 2025-06-04 15:54:38,231 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 11:54:57] 2025-06-04 15:54:38,231 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 11:54:57] 2025-06-04 15:54:38,232 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 11:54:57] 2025-06-04 15:54:38,232 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 11:54:57] 2025-06-04 15:54:38,232 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 11:54:57] 2025-06-04 15:54:38,232 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 11:54:57] 2025-06-04 15:54:38,232 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 11:54:57] 2025-06-04 15:54:38,232 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 11:54:57] 2025-06-04 15:54:38,232 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 11:54:57] 2025-06-04 15:54:38,232 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 11:54:57] 2025-06-04 15:54:38,232 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 11:54:57] 2025-06-04 15:54:38,232 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 11:54:57] 2025-06-04 15:54:38,232 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 11:54:57] 2025-06-04 15:54:38,232 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 11:54:57] 2025-06-04 15:54:38,232 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 11:54:57] 2025-06-04 15:54:38,232 | INFO     | job 6666805817 has completed (purged errors)
[2025-06-04 11:54:57] 2025-06-04 15:54:38,232 | INFO     | overall cleanup function is called
[2025-06-04 11:54:57] 2025-06-04 15:54:39,238 | INFO     | --- collectZombieJob: --- 10, [20610]
[2025-06-04 11:54:57] 2025-06-04 15:54:39,238 | INFO     | zombie collector waiting for pid 20610
[2025-06-04 11:54:57] 2025-06-04 15:54:39,238 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 11:54:57] 2025-06-04 15:54:39,238 | INFO     | collected zombie processes
[2025-06-04 11:54:57] 2025-06-04 15:54:39,238 | INFO     | will attempt to kill all subprocesses of pid=20610
[2025-06-04 11:54:57] 2025-06-04 15:54:39,378 | INFO     | process IDs to be killed: [20610] (in reverse order)
[2025-06-04 11:54:57] 2025-06-04 15:54:39,438 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 11:54:57] 2025-06-04 15:54:39,438 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 11:54:57] 2025-06-04 15:54:39,444 | INFO     | did not find any defunct processes belonging to 20610
[2025-06-04 11:54:57] 2025-06-04 15:54:39,448 | INFO     | did not find any defunct processes belonging to 20610
[2025-06-04 11:54:57] 2025-06-04 15:54:39,448 | INFO     | ready for new job
[2025-06-04 11:54:57] 2025-06-04 15:54:39,448 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 11:54:57] 2025-06-04 15:54:39,449 | INFO     | **************************************
[2025-06-04 11:54:57] 2025-06-04 15:54:39,449 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 11:54:57] 2025-06-04 15:54:39,449 | INFO     | **************************************
[2025-06-04 11:54:57] 2025-06-04 15:54:39,449 | INFO     | 
[2025-06-04 11:54:57] 2025-06-04 15:54:39,451 | INFO     | architecture information:
[2025-06-04 11:54:57] 2025-06-04 15:54:39,452 | INFO     | executing command: cat /etc/os-release
[2025-06-04 11:54:57] 2025-06-04 15:54:39,464 | INFO     | cat /etc/os-release:
[2025-06-04 11:54:57] NAME="CentOS Linux"
[2025-06-04 11:54:57] VERSION="7 (Core)"
[2025-06-04 11:54:57] ID="centos"
[2025-06-04 11:54:57] ID_LIKE="rhel fedora"
[2025-06-04 11:54:57] VERSION_ID="7"
[2025-06-04 11:54:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 11:54:57] ANSI_COLOR="0;31"
[2025-06-04 11:54:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 11:54:57] HOME_URL="https://www.centos.org/"
[2025-06-04 11:54:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 11:54:57] 
[2025-06-04 11:54:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 11:54:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 11:54:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 11:54:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 11:54:57] 
[2025-06-04 11:54:57] 2025-06-04 15:54:39,464 | INFO     | **************************************
[2025-06-04 11:54:57] 2025-06-04 15:54:39,967 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-06-04 11:54:57] 2025-06-04 15:54:39,980 | INFO     | sufficient remaining disk space (104813559808 B)
[2025-06-04 11:54:57] 2025-06-04 15:54:39,980 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 11:54:57] 2025-06-04 15:54:39,981 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 11:54:57] 2025-06-04 15:54:39,981 | INFO     | update_server=False
[2025-06-04 11:54:57] 2025-06-04 15:54:39,981 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 11:54:57] 2025-06-04 15:54:39,981 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 11:54:57] 2025-06-04 15:54:39,981 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:54:57] 2025-06-04 15:54:40,088 | INFO     | all job control threads have been joined
[2025-06-04 11:54:57] 2025-06-04 15:54:40,090 | INFO     | all payload control threads have been joined
[2025-06-04 11:54:57] 2025-06-04 15:54:40,409 | INFO     | all data control threads have been joined
[2025-06-04 11:54:57] 2025-06-04 15:54:40,455 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 11:54:57] 2025-06-04 15:54:40,455 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 11:54:57] 2025-06-04 15:54:40,455 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:54:57] 2025-06-04 15:54:40,455 | INFO     | will abort loop
[2025-06-04 11:54:57] 2025-06-04 15:54:40,876 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 11:54:57] 2025-06-04 15:54:40,876 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 11:54:57] 2025-06-04 15:54:40,876 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 11:54:57] 2025-06-04 15:54:40,984 | INFO     | [job] queue monitor thread has finished
[2025-06-04 11:54:57] 2025-06-04 15:54:40,986 | INFO     | [job] retrieve thread has finished
[2025-06-04 11:54:57] 2025-06-04 15:54:41,093 | INFO     | [job] control thread has finished
[2025-06-04 11:54:57] 2025-06-04 15:54:41,095 | INFO     | [payload] control thread has finished
[2025-06-04 11:54:57] 2025-06-04 15:54:41,222 | INFO     | [data] copytool_in thread has finished
[2025-06-04 11:54:57] 2025-06-04 15:54:41,262 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 11:54:57] 2025-06-04 15:54:41,414 | INFO     | [data] control thread has finished
[2025-06-04 11:54:57] 2025-06-04 15:54:41,456 | INFO     | [job] job monitor thread has finished
[2025-06-04 11:54:57] 2025-06-04 15:54:41,552 | INFO     | [payload] validate_post thread has finished
[2025-06-04 11:54:57] 2025-06-04 15:54:41,717 | INFO     | [job] validate thread has finished
[2025-06-04 11:54:57] 2025-06-04 15:54:42,075 | INFO     | [payload] failed_post thread has finished
[2025-06-04 11:54:57] 2025-06-04 15:54:42,225 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 11:54:57] 2025-06-04 15:54:42,234 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 11:54:57] 2025-06-04 15:54:42,482 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 11:54:57] 2025-06-04 15:54:43,265 | INFO     | [data] copytool_out thread has finished
[2025-06-04 11:54:57] 2025-06-04 15:54:43,986 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 11:54:57] 2025-06-04 15:54:50,478 | INFO     | job.realtimelogging is not enabled
[2025-06-04 11:54:57] 2025-06-04 15:54:51,483 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 11:54:57] 2025-06-04 15:54:51,753 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140210932119360)>', '<ExcThread(monitor, started 140210272724736)>']
[2025-06-04 11:54:57] 2025-06-04 15:54:51,919 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 11:54:57] 2025-06-04 15:54:51,919 | INFO     | [monitor] control thread has ended
[2025-06-04 11:54:57] 2025-06-04 15:54:56,778 | INFO     | all workflow threads have been joined
[2025-06-04 11:54:57] 2025-06-04 15:54:56,778 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 11:54:57] 2025-06-04 15:54:56,779 | INFO     | traces error code: 0
[2025-06-04 11:54:57] 2025-06-04 15:54:56,779 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 11:54:57] 2025-06-04 15:54:56,855 [wrapper] ==== pilot stdout END ====
[2025-06-04 11:54:57] 2025-06-04 15:54:56,858 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 11:54:57] 2025-06-04 15:54:56,860 [wrapper] pilotpid: 4273
[2025-06-04 11:54:57] 2025-06-04 15:54:56,862 [wrapper] Pilot exit status: 0
[2025-06-04 11:54:57] 2025-06-04 15:54:56,886 [wrapper] pandaids: 6666805817
[2025-06-04 11:54:57] 2025-06-04 15:54:56,953 [wrapper] cleanup supervisor_pilot 80132 4274
[2025-06-04 11:54:57] 2025-06-04 15:54:56,955 [wrapper] Test setup, not cleaning
[2025-06-04 11:54:57] 2025-06-04 15:54:56,958 [wrapper] apfmon messages muted
[2025-06-04 11:54:57] 2025-06-04 15:54:56,960 [wrapper] ==== wrapper stdout END ====
[2025-06-04 11:54:57] 2025-06-04 15:54:56,961 [wrapper] ==== wrapper stderr END ====
[2025-06-04 11:54:57]  *** Error codes and diagnostics ***
[2025-06-04 11:54:57]     "exeErrorCode": 0,
[2025-06-04 11:54:57]     "exeErrorDiag": "",
[2025-06-04 11:54:57]     "pilotErrorCode": 0,
[2025-06-04 11:54:57]     "pilotErrorDiag": "",
[2025-06-04 11:54:57]  *** Listing of results directory ***
[2025-06-04 11:54:57] total 419776
[2025-06-04 11:54:57] -rw-r--r-- 1 boincer umatlas    495897 May 27 02:07 pilot3.tar.gz
[2025-06-04 11:54:57] -rw-r--r-- 1 boincer umatlas      5111 May 27 02:19 queuedata.json
[2025-06-04 11:54:57] -rwx------ 1 boincer umatlas     37140 May 27 02:20 runpilot2-wrapper.sh
[2025-06-04 11:54:57] -rw-r--r-- 1 boincer umatlas       100 Jun  4 10:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 11:54:57] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 10:17 run_atlas
[2025-06-04 11:54:57] -rw-r--r-- 1 boincer umatlas       105 Jun  4 10:17 job.xml
[2025-06-04 11:54:57] -rw-r--r-- 2 boincer umatlas 228601579 Jun  4 10:17 EVNT.44871834._002496.pool.root.1
[2025-06-04 11:54:57] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 10:17 start_atlas.sh
[2025-06-04 11:54:57] drwxrwx--x 2 boincer umatlas      4096 Jun  4 10:17 shared
[2025-06-04 11:54:57] -rw-r--r-- 2 boincer umatlas    508883 Jun  4 10:17 input.tar.gz
[2025-06-04 11:54:57] -rw-r--r-- 1 boincer umatlas         0 Jun  4 10:17 boinc_lockfile
[2025-06-04 11:54:57] -rw-r--r-- 1 boincer umatlas      2559 Jun  4 10:17 pandaJob.out
[2025-06-04 11:54:57] -rw------- 1 boincer umatlas    986819 Jun  4 10:18 agis_schedconf.cvmfs.json
[2025-06-04 11:54:57] -rw------- 1 boincer umatlas   1598969 Jun  4 10:18 agis_ddmendpoints.agis.ALL.json
[2025-06-04 11:54:57] drwx------ 4 boincer umatlas      4096 Jun  4 10:18 pilot3
[2025-06-04 11:54:57] -rw-r--r-- 1 boincer umatlas      6388 Jun  4 11:46 init_data.xml
[2025-06-04 11:54:57] -rw------- 1 boincer umatlas 195677000 Jun  4 11:54 HITS.44871837._063291.pool.root.1
[2025-06-04 11:54:57] -rw-r--r-- 1 boincer umatlas       529 Jun  4 11:54 boinc_task_state.xml
[2025-06-04 11:54:57] -rw------- 1 boincer umatlas      1078 Jun  4 11:54 memory_monitor_summary.json
[2025-06-04 11:54:57] -rw------- 1 boincer umatlas    310546 Jun  4 11:54 log.44871837._063291.job.log.tgz.1
[2025-06-04 11:54:57] -rw------- 1 boincer umatlas        95 Jun  4 11:54 pilot_heartbeat.json
[2025-06-04 11:54:57] -rw------- 1 boincer umatlas      7740 Jun  4 11:54 heartbeat.json
[2025-06-04 11:54:57] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 11:54 boinc_mmap_file
[2025-06-04 11:54:57] -rw-r--r-- 1 boincer umatlas        27 Jun  4 11:54 wrapper_checkpoint.txt
[2025-06-04 11:54:57] -rw------- 1 boincer umatlas      4612 Jun  4 11:54 pilotlog.txt
[2025-06-04 11:54:57] -rw------- 1 boincer umatlas    558917 Jun  4 11:54 log.44871837._063291.job.log.1
[2025-06-04 11:54:57] -rw------- 1 boincer umatlas       357 Jun  4 11:54 output.list
[2025-06-04 11:54:57] -rw-r--r-- 1 boincer umatlas       620 Jun  4 11:54 runtime_log
[2025-06-04 11:54:57] -rw------- 1 boincer umatlas    890880 Jun  4 11:54 result.tar.gz
[2025-06-04 11:54:57] -rw-r--r-- 1 boincer umatlas      8659 Jun  4 11:54 runtime_log.err
[2025-06-04 11:54:57] -rw------- 1 boincer umatlas       657 Jun  4 11:54 KFwMDmiq2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmZRRKDmqcljYn.diag
[2025-06-04 11:54:57] -rw-r--r-- 1 boincer umatlas     21509 Jun  4 11:54 stderr.txt
[2025-06-04 11:54:57] HITS file was successfully produced:
[2025-06-04 11:54:57] -rw------- 1 boincer umatlas 195677000 Jun  4 11:54 shared/HITS.pool.root.1
[2025-06-04 11:54:57]  *** Contents of shared directory: ***
[2025-06-04 11:54:57] total 415732
[2025-06-04 11:54:57] -rw-r--r-- 2 boincer umatlas 228601579 Jun  4 10:17 ATLAS.root_0
[2025-06-04 11:54:57] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 10:17 start_atlas.sh
[2025-06-04 11:54:57] -rw-r--r-- 2 boincer umatlas    508883 Jun  4 10:17 input.tar.gz
[2025-06-04 11:54:57] -rw------- 1 boincer umatlas 195677000 Jun  4 11:54 HITS.pool.root.1
[2025-06-04 11:54:57] -rw------- 1 boincer umatlas    890880 Jun  4 11:54 result.tar.gz
11:54:58 (92715): run_atlas exited; CPU time 40384.814733
11:54:58 (92715): called boinc_finish(0)

</stderr_txt>
]]>

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