Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:14:28 (2698156): wrapper (7.7.26015): starting
11:14:28 (2698156): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 11:14:28] Arguments: --nthreads 12
[2025-06-04 11:14:28] Threads: 12
[2025-06-04 11:14:28] Checking for CVMFS
[2025-06-04 11:14:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 11:14:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 11:14:28] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 11:14:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 11:14:28] 2.12.6.0 5554 987 123236 146783 1 71 26160356 32935936 7784 16776704 0 5619964 99.584 4777939 34670 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 11:14:28] CVMFS is ok
[2025-06-04 11:14:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 11:14:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 11:14:28] Further information can be found at the LHC@home message board.
[2025-06-04 11:14:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 11:14:28] Checking for apptainer binary...
[2025-06-04 11:14:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 11:14:28] Running /usr/bin/apptainer --version
[2025-06-04 11:14:28] apptainer version 1.4.1-1.el9
[2025-06-04 11:14:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 11:14:28] c6-1-26-2.aglt2.org
[2025-06-04 11:14:28] apptainer works
[2025-06-04 11:14:28] Set ATHENA_PROC_NUMBER=12
[2025-06-04 11:14:28] Set ATHENA_CORE_NUMBER=12
[2025-06-04 11:14:28] Starting ATLAS job with PandaID=6667729919
[2025-06-04 11:14:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 12:14:48]  *** The last 200 lines of the pilot log: ***
[2025-06-04 12:14:48]  is_altstaged=None
[2025-06-04 12:14:48]  is_tar=False
[2025-06-04 12:14:48]  lfn=log.44871837._074731.job.log.tgz.1
[2025-06-04 12:14:48]  mtime=0
[2025-06-04 12:14:48]  protocol_id=None
[2025-06-04 12:14:48]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 12:14:48]  replicas=None
[2025-06-04 12:14:48]  scope=mc23_13p6TeV
[2025-06-04 12:14:48]  status=None
[2025-06-04 12:14:48]  status_code=0
[2025-06-04 12:14:48]  storage_token=
[2025-06-04 12:14:48]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6667729919/log.44871837._074731.job.log.tgz.1
[2025-06-04 12:14:48]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ef/8a/log.44871837._074731.job.log.tgz.1
[2025-06-04 12:14:48]  workdir=None
[2025-06-04 12:14:48] ]
[2025-06-04 12:14:48] 2025-06-04 16:14:21,935 | INFO     | transferring file log.44871837._074731.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6667729919/log.44871837._074731.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 12:14:48] 2025-06-04 16:14:21,935 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6667729919/log.44871837._074731.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._074731.job
[2025-06-04 12:14:48] 2025-06-04 16:14:21,952 | INFO     | adding to output.list: log.44871837._074731.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ef/8a/log.44871837._074731.job.log.tg
[2025-06-04 12:14:48] 2025-06-04 16:14:21,953 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 12:14:48] 2025-06-04 16:14:21,953 | INFO     | summary of transferred files:
[2025-06-04 12:14:48] 2025-06-04 16:14:21,953 | INFO     |  -- lfn=log.44871837._074731.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 12:14:48] 2025-06-04 16:14:21,954 | INFO     | stage-out finished correctly
[2025-06-04 12:14:48] 2025-06-04 16:14:24,932 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 12:14:48] 2025-06-04 16:14:25,263 | WARNING  | process 2711769 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 12:14:48] 2025-06-04 16:14:25,263 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6667729919/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 12:14:48] 2025-06-04 16:14:25,452 | INFO     | number of running child processes to parent process 2711769: 1
[2025-06-04 12:14:48] 2025-06-04 16:14:25,452 | INFO     | maximum number of monitored processes: 6
[2025-06-04 12:14:48] 2025-06-04 16:14:25,872 | INFO     | job 6667729919 has state=finished
[2025-06-04 12:14:48] 2025-06-04 16:14:25,872 | INFO     | preparing for final server update for job 6667729919 in state='finished'
[2025-06-04 12:14:48] 2025-06-04 16:14:25,873 | INFO     | this job has now completed (state=finished)
[2025-06-04 12:14:48] 2025-06-04 16:14:25,873 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 12:14:48] 2025-06-04 16:14:25,873 | INFO     | log transfer has been attempted: DONE
[2025-06-04 12:14:48] 2025-06-04 16:14:25,873 | INFO     | job 6667729919 has finished - writing final server update
[2025-06-04 12:14:48] 2025-06-04 16:14:25,874 | INFO     | total number of processed events: 400 (read)
[2025-06-04 12:14:48] 2025-06-04 16:14:25,890 | INFO     | executing command: lscpu
[2025-06-04 12:14:48] 2025-06-04 16:14:25,960 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 12:14:48] 2025-06-04 16:14:27,955 | INFO     | monitor loop #271: job 0:6667729919 is in state 'finished'
[2025-06-04 12:14:48] 2025-06-04 16:14:27,956 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 12:14:48] 2025-06-04 16:14:29,341 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 12:14:48] 2025-06-04 16:14:29,341 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6667729919/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 12:14:48] 2025-06-04 16:14:29,342 | INFO     | extracted standard info from prmon json
[2025-06-04 12:14:48] 2025-06-04 16:14:29,342 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 12:14:48] 2025-06-04 16:14:29,342 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 12:14:48] 2025-06-04 16:14:29,343 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 12:14:48] 2025-06-04 16:14:29,343 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 12:14:48] 2025-06-04 16:14:29,345 | INFO     | fitting pss+swap vs Time
[2025-06-04 12:14:48] 2025-06-04 16:14:29,345 | INFO     | sum of square deviations: 43584073.0
[2025-06-04 12:14:48] 2025-06-04 16:14:29,345 | INFO     | sum of deviations: 976351573.5
[2025-06-04 12:14:48] 2025-06-04 16:14:29,345 | INFO     | mean x: 1749051964.5
[2025-06-04 12:14:48] 2025-06-04 16:14:29,345 | INFO     | mean y: 2579506.173076923
[2025-06-04 12:14:48] 2025-06-04 16:14:29,346 | INFO     | -- intersect: -39178926950.84945
[2025-06-04 12:14:48] 2025-06-04 16:14:29,346 | INFO     | intersect: -39178926950.84945
[2025-06-04 12:14:48] 2025-06-04 16:14:29,346 | INFO     | chi2: 0.005938581515979967
[2025-06-04 12:14:48] 2025-06-04 16:14:29,346 | INFO     | -- intersect: -39178926950.84945
[2025-06-04 12:14:48] 2025-06-04 16:14:29,346 | INFO     | current memory leak: 22.40 B/s (using 52 data points, chi2=0.01)
[2025-06-04 12:14:48] 2025-06-04 16:14:29,347 | INFO     | ..............................
[2025-06-04 12:14:48] 2025-06-04 16:14:29,347 | INFO     | . Timing measurements:
[2025-06-04 12:14:48] 2025-06-04 16:14:29,347 | INFO     | . get job = 0 s
[2025-06-04 12:14:48] 2025-06-04 16:14:29,347 | INFO     | . initial setup = 2 s
[2025-06-04 12:14:48] 2025-06-04 16:14:29,347 | INFO     | . payload setup = 6 s
[2025-06-04 12:14:48] 2025-06-04 16:14:29,347 | INFO     | . stage-in = 0 s
[2025-06-04 12:14:48] 2025-06-04 16:14:29,347 | INFO     | . payload execution = 3557 s
[2025-06-04 12:14:48] 2025-06-04 16:14:29,347 | INFO     | . stage-out = 0 s
[2025-06-04 12:14:48] 2025-06-04 16:14:29,347 | INFO     | . log creation = 0 s
[2025-06-04 12:14:48] 2025-06-04 16:14:29,347 | INFO     | ..............................
[2025-06-04 12:14:48] 2025-06-04 16:14:29,451 | INFO     | 
[2025-06-04 12:14:48] 2025-06-04 16:14:29,451 | INFO     | job summary report
[2025-06-04 12:14:48] 2025-06-04 16:14:29,451 | INFO     | --------------------------------------------------
[2025-06-04 12:14:48] 2025-06-04 16:14:29,451 | INFO     | PanDA job id: 6667729919
[2025-06-04 12:14:48] 2025-06-04 16:14:29,451 | INFO     | task id: 44871837
[2025-06-04 12:14:48] 2025-06-04 16:14:29,451 | INFO     | errors: (none)
[2025-06-04 12:14:48] 2025-06-04 16:14:29,451 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 12:14:48] 2025-06-04 16:14:29,451 | INFO     | pilot state: finished 
[2025-06-04 12:14:48] 2025-06-04 16:14:29,451 | INFO     | transexitcode: 0
[2025-06-04 12:14:48] 2025-06-04 16:14:29,451 | INFO     | exeerrorcode: 0
[2025-06-04 12:14:48] 2025-06-04 16:14:29,451 | INFO     | exeerrordiag: 
[2025-06-04 12:14:48] 2025-06-04 16:14:29,451 | INFO     | exitcode: 0
[2025-06-04 12:14:48] 2025-06-04 16:14:29,452 | INFO     | exitmsg: OK
[2025-06-04 12:14:48] 2025-06-04 16:14:29,452 | INFO     | cpuconsumptiontime: 38192 s
[2025-06-04 12:14:48] 2025-06-04 16:14:29,452 | INFO     | nevents: 400
[2025-06-04 12:14:48] 2025-06-04 16:14:29,452 | INFO     | neventsw: 0
[2025-06-04 12:14:48] 2025-06-04 16:14:29,452 | INFO     | pid: 2711769
[2025-06-04 12:14:48] 2025-06-04 16:14:29,452 | INFO     | pgrp: 2711769
[2025-06-04 12:14:48] 2025-06-04 16:14:29,452 | INFO     | corecount: 12
[2025-06-04 12:14:48] 2025-06-04 16:14:29,452 | INFO     | event service: False
[2025-06-04 12:14:48] 2025-06-04 16:14:29,452 | INFO     | sizes: {0: 2397392, 5: 2397598, 11: 2397654, 3567: 2423315, 3568: 2432256, 3571: 2432312, 3576: 2432610}
[2025-06-04 12:14:48] 2025-06-04 16:14:29,452 | INFO     | --------------------------------------------------
[2025-06-04 12:14:48] 2025-06-04 16:14:29,452 | INFO     | 
[2025-06-04 12:14:48] 2025-06-04 16:14:29,452 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 12:14:48] 2025-06-04 16:14:29,469 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 12:14:48] 2025-06-04 16:14:29,470 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 12:14:48] 2025-06-04 16:14:29,470 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 12:14:48] 2025-06-04 16:14:29,470 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 12:14:48] 2025-06-04 16:14:29,470 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 12:14:48] 2025-06-04 16:14:29,470 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 12:14:48] 2025-06-04 16:14:29,470 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 12:14:48] 2025-06-04 16:14:29,470 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 12:14:48] 2025-06-04 16:14:29,470 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 12:14:48] 2025-06-04 16:14:29,470 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 12:14:48] 2025-06-04 16:14:29,470 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 12:14:48] 2025-06-04 16:14:29,471 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 12:14:48] 2025-06-04 16:14:29,471 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 12:14:48] 2025-06-04 16:14:29,471 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 12:14:48] 2025-06-04 16:14:29,471 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 12:14:48] 2025-06-04 16:14:29,471 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 12:14:48] 2025-06-04 16:14:29,471 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 12:14:48] 2025-06-04 16:14:29,471 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 12:14:48] 2025-06-04 16:14:29,471 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 12:14:48] 2025-06-04 16:14:29,471 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 12:14:48] 2025-06-04 16:14:29,471 | INFO     | job 6667729919 has completed (purged errors)
[2025-06-04 12:14:48] 2025-06-04 16:14:29,471 | INFO     | overall cleanup function is called
[2025-06-04 12:14:48] 2025-06-04 16:14:30,476 | INFO     | --- collectZombieJob: --- 10, [2711769]
[2025-06-04 12:14:48] 2025-06-04 16:14:30,477 | INFO     | zombie collector waiting for pid 2711769
[2025-06-04 12:14:48] 2025-06-04 16:14:30,477 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 12:14:48] 2025-06-04 16:14:30,477 | INFO     | collected zombie processes
[2025-06-04 12:14:48] 2025-06-04 16:14:30,477 | INFO     | will attempt to kill all subprocesses of pid=2711769
[2025-06-04 12:14:48] 2025-06-04 16:14:30,701 | INFO     | process IDs to be killed: [2711769] (in reverse order)
[2025-06-04 12:14:48] 2025-06-04 16:14:30,771 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 12:14:48] 2025-06-04 16:14:30,772 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 12:14:48] 2025-06-04 16:14:30,781 | INFO     | did not find any defunct processes belonging to 2711769
[2025-06-04 12:14:48] 2025-06-04 16:14:30,790 | INFO     | did not find any defunct processes belonging to 2711769
[2025-06-04 12:14:48] 2025-06-04 16:14:30,790 | INFO     | ready for new job
[2025-06-04 12:14:48] 2025-06-04 16:14:30,790 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 12:14:48] 2025-06-04 16:14:30,792 | INFO     | **************************************
[2025-06-04 12:14:48] 2025-06-04 16:14:30,792 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 12:14:48] 2025-06-04 16:14:30,792 | INFO     | **************************************
[2025-06-04 12:14:48] 2025-06-04 16:14:30,792 | INFO     | 
[2025-06-04 12:14:48] 2025-06-04 16:14:30,808 | INFO     | architecture information:
[2025-06-04 12:14:48] 2025-06-04 16:14:30,808 | INFO     | executing command: cat /etc/os-release
[2025-06-04 12:14:48] 2025-06-04 16:14:30,822 | INFO     | cat /etc/os-release:
[2025-06-04 12:14:48] NAME="CentOS Linux"
[2025-06-04 12:14:48] VERSION="7 (Core)"
[2025-06-04 12:14:48] ID="centos"
[2025-06-04 12:14:48] ID_LIKE="rhel fedora"
[2025-06-04 12:14:48] VERSION_ID="7"
[2025-06-04 12:14:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 12:14:48] ANSI_COLOR="0;31"
[2025-06-04 12:14:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 12:14:48] HOME_URL="https://www.centos.org/"
[2025-06-04 12:14:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 12:14:48] 
[2025-06-04 12:14:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 12:14:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 12:14:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 12:14:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 12:14:48] 
[2025-06-04 12:14:48] 2025-06-04 16:14:30,822 | INFO     | **************************************
[2025-06-04 12:14:48] 2025-06-04 16:14:31,326 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 12:14:48] 2025-06-04 16:14:31,342 | INFO     | sufficient remaining disk space (76483133440 B)
[2025-06-04 12:14:48] 2025-06-04 16:14:31,343 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 12:14:48] 2025-06-04 16:14:31,343 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 12:14:48] 2025-06-04 16:14:31,343 | INFO     | update_server=False
[2025-06-04 12:14:48] 2025-06-04 16:14:31,343 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 12:14:48] 2025-06-04 16:14:31,343 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 12:14:48] 2025-06-04 16:14:31,344 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 12:14:48] 2025-06-04 16:14:31,344 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 12:14:48] 2025-06-04 16:14:31,344 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 12:14:48] 2025-06-04 16:14:31,345 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 12:14:48] 2025-06-04 16:14:31,345 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 12:14:48] 2025-06-04 16:14:31,464 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 12:14:48] 2025-06-04 16:14:31,464 | INFO     | aborting loop
[2025-06-04 12:14:48] 2025-06-04 16:14:31,623 | INFO     | all data control threads have been joined
[2025-06-04 12:14:48] 2025-06-04 16:14:31,690 | INFO     | all payload control threads have been joined
[2025-06-04 12:14:48] 2025-06-04 16:14:32,349 | INFO     | [job] retrieve thread has finished
[2025-06-04 12:14:48] 2025-06-04 16:14:32,350 | INFO     | [job] queue monitor thread has finished
[2025-06-04 12:14:48] 2025-06-04 16:14:32,469 | INFO     | [job] job monitor thread has finished
[2025-06-04 12:14:48] 2025-06-04 16:14:32,470 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 12:14:48] 2025-06-04 16:14:32,481 | INFO     | all job control threads have been joined
[2025-06-04 12:14:48] 2025-06-04 16:14:32,551 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 12:14:48] 2025-06-04 16:14:32,553 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 12:14:48] 2025-06-04 16:14:32,628 | INFO     | [data] control thread has finished
[2025-06-04 12:14:48] 2025-06-04 16:14:32,695 | INFO     | [payload] control thread has finished
[2025-06-04 12:14:48] 2025-06-04 16:14:32,856 | INFO     | [payload] failed_post thread has finished
[2025-06-04 12:14:48] 2025-06-04 16:14:33,409 | INFO     | [payload] validate_post thread has finished
[2025-06-04 12:14:48] 2025-06-04 16:14:33,487 | INFO     | [job] control thread has finished
[2025-06-04 12:14:48] 2025-06-04 16:14:33,726 | INFO     | [data] copytool_in thread has finished
[2025-06-04 12:14:48] 2025-06-04 16:14:33,785 | INFO     | [job] validate thread has finished
[2025-06-04 12:14:48] 2025-06-04 16:14:33,832 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 12:14:48] 2025-06-04 16:14:34,558 | INFO     | [data] copytool_out thread has finished
[2025-06-04 12:14:48] 2025-06-04 16:14:35,156 [wrapper] supervise_pilot (15 min periods counter: 5)
[2025-06-04 12:14:48] 2025-06-04 16:14:35,351 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 12:14:48] 2025-06-04 16:14:42,176 | INFO     | job.realtimelogging is not enabled
[2025-06-04 12:14:48] 2025-06-04 16:14:43,181 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 12:14:48] 2025-06-04 16:14:43,221 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139740067878720)>', '<ExcThread(monitor, started 139739445327616)>']
[2025-06-04 12:14:48] 2025-06-04 16:14:43,394 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 12:14:48] 2025-06-04 16:14:43,395 | INFO     | [monitor] control thread has ended
[2025-06-04 12:14:48] 2025-06-04 16:14:48,241 | INFO     | all workflow threads have been joined
[2025-06-04 12:14:48] 2025-06-04 16:14:48,241 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 12:14:48] 2025-06-04 16:14:48,241 | INFO     | traces error code: 0
[2025-06-04 12:14:48] 2025-06-04 16:14:48,242 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 12:14:48] 2025-06-04 16:14:48,410 [wrapper] ==== pilot stdout END ====
[2025-06-04 12:14:48] 2025-06-04 16:14:48,413 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 12:14:48] 2025-06-04 16:14:48,415 [wrapper] pilotpid: 2701807
[2025-06-04 12:14:48] 2025-06-04 16:14:48,417 [wrapper] Pilot exit status: 0
[2025-06-04 12:14:48] 2025-06-04 16:14:48,425 [wrapper] pandaids: 6667729919
[2025-06-04 12:14:48] 2025-06-04 16:14:48,471 [wrapper] cleanup supervisor_pilot 2858571 2701808
[2025-06-04 12:14:48] 2025-06-04 16:14:48,473 [wrapper] Test setup, not cleaning
[2025-06-04 12:14:48] 2025-06-04 16:14:48,475 [wrapper] apfmon messages muted
[2025-06-04 12:14:48] 2025-06-04 16:14:48,478 [wrapper] ==== wrapper stdout END ====
[2025-06-04 12:14:48] 2025-06-04 16:14:48,480 [wrapper] ==== wrapper stderr END ====
[2025-06-04 12:14:48]  *** Error codes and diagnostics ***
[2025-06-04 12:14:48]     "exeErrorCode": 0,
[2025-06-04 12:14:48]     "exeErrorDiag": "",
[2025-06-04 12:14:48]     "pilotErrorCode": 0,
[2025-06-04 12:14:48]     "pilotErrorDiag": "",
[2025-06-04 12:14:48]  *** Listing of results directory ***
[2025-06-04 12:14:48] total 413676
[2025-06-04 12:14:48] -rw-r--r--. 1 boincer umatlas    495897 May 27 18:42 pilot3.tar.gz
[2025-06-04 12:14:48] -rw-r--r--. 1 boincer umatlas      5111 May 27 19:05 queuedata.json
[2025-06-04 12:14:48] -rwx------. 1 boincer umatlas     37140 May 27 19:05 runpilot2-wrapper.sh
[2025-06-04 12:14:48] -rw-r--r--. 1 boincer umatlas       100 Jun  4 11:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 12:14:48] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 11:14 run_atlas
[2025-06-04 12:14:48] -rw-r--r--. 1 boincer umatlas       105 Jun  4 11:14 job.xml
[2025-06-04 12:14:48] -rw-r--r--. 2 boincer umatlas 225168266 Jun  4 11:14 EVNT.44871834._002927.pool.root.1
[2025-06-04 12:14:48] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 11:14 start_atlas.sh
[2025-06-04 12:14:48] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 11:14 shared
[2025-06-04 12:14:48] -rw-r--r--. 2 boincer umatlas    508883 Jun  4 11:14 input.tar.gz
[2025-06-04 12:14:48] -rw-r--r--. 1 boincer umatlas         0 Jun  4 11:14 boinc_lockfile
[2025-06-04 12:14:48] -rw-r--r--. 1 boincer umatlas      2559 Jun  4 11:14 pandaJob.out
[2025-06-04 12:14:48] -rw-------. 1 boincer umatlas    987207 Jun  4 11:14 agis_schedconf.cvmfs.json
[2025-06-04 12:14:48] -rw-------. 1 boincer umatlas   1598969 Jun  4 11:14 agis_ddmendpoints.agis.ALL.json
[2025-06-04 12:14:48] drwx------. 4 boincer umatlas      4096 Jun  4 11:14 pilot3
[2025-06-04 12:14:48] -rw-------. 1 boincer umatlas        95 Jun  4 12:13 pilot_heartbeat.json
[2025-06-04 12:14:48] -rw-------. 1 boincer umatlas 193143975 Jun  4 12:13 HITS.44871837._074731.pool.root.1
[2025-06-04 12:14:48] -rw-r--r--. 1 boincer umatlas       529 Jun  4 12:13 boinc_task_state.xml
[2025-06-04 12:14:48] -rw-r--r--. 1 boincer umatlas      6842 Jun  4 12:14 init_data.xml
[2025-06-04 12:14:48] -rw-------. 1 boincer umatlas      1037 Jun  4 12:14 memory_monitor_summary.json
[2025-06-04 12:14:48] -rw-------. 1 boincer umatlas    363911 Jun  4 12:14 log.44871837._074731.job.log.tgz.1
[2025-06-04 12:14:48] -rw-------. 1 boincer umatlas      7717 Jun  4 12:14 heartbeat.json
[2025-06-04 12:14:48] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 12:14 boinc_mmap_file
[2025-06-04 12:14:48] -rw-r--r--. 1 boincer umatlas        27 Jun  4 12:14 wrapper_checkpoint.txt
[2025-06-04 12:14:48] -rw-------. 1 boincer umatlas      4548 Jun  4 12:14 pilotlog.txt
[2025-06-04 12:14:48] -rw-------. 1 boincer umatlas    367340 Jun  4 12:14 log.44871837._074731.job.log.1
[2025-06-04 12:14:48] -rw-------. 1 boincer umatlas       357 Jun  4 12:14 output.list
[2025-06-04 12:14:48] -rw-r--r--. 1 boincer umatlas       620 Jun  4 12:14 runtime_log
[2025-06-04 12:14:48] -rw-------. 1 boincer umatlas    747520 Jun  4 12:14 result.tar.gz
[2025-06-04 12:14:48] -rw-r--r--. 1 boincer umatlas      8666 Jun  4 12:14 runtime_log.err
[2025-06-04 12:14:48] -rw-------. 1 boincer umatlas       654 Jun  4 12:14 hbsMDmVXIe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmYYSKDm9VO8cm.diag
[2025-06-04 12:14:48] -rw-r--r--. 1 boincer umatlas     21388 Jun  4 12:14 stderr.txt
[2025-06-04 12:14:48] HITS file was successfully produced:
[2025-06-04 12:14:48] -rw-------. 1 boincer umatlas 193143975 Jun  4 12:13 shared/HITS.pool.root.1
[2025-06-04 12:14:48]  *** Contents of shared directory: ***
[2025-06-04 12:14:48] total 409764
[2025-06-04 12:14:48] -rw-r--r--. 2 boincer umatlas 225168266 Jun  4 11:14 ATLAS.root_0
[2025-06-04 12:14:48] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 11:14 start_atlas.sh
[2025-06-04 12:14:48] -rw-r--r--. 2 boincer umatlas    508883 Jun  4 11:14 input.tar.gz
[2025-06-04 12:14:48] -rw-------. 1 boincer umatlas 193143975 Jun  4 12:13 HITS.pool.root.1
[2025-06-04 12:14:48] -rw-------. 1 boincer umatlas    747520 Jun  4 12:14 result.tar.gz
12:14:49 (2698156): run_atlas exited; CPU time 38255.284686
12:14:49 (2698156): called boinc_finish(0)

</stderr_txt>
]]>

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