Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
01:54:39 (1950872): wrapper (7.7.26015): starting
01:54:39 (1950872): wrapper: running run_atlas (--nthreads 3)
[2025-06-05 01:54:39] Arguments: --nthreads 3
[2025-06-05 01:54:39] Threads: 3
[2025-06-05 01:54:39] Checking for CVMFS
[2025-06-05 01:54:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 01:54:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 01:54:39] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 01:54:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 01:54:39] 2.9.2.0 1262746 2063 81968 146798 0 56 16566002 36864000 0 130560 0 1867597 99.992 467317 44710 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-06-05 01:54:39] CVMFS is ok
[2025-06-05 01:54:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 01:54:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 01:54:39] Further information can be found at the LHC@home message board.
[2025-06-05 01:54:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 01:54:39] Checking for apptainer binary...
[2025-06-05 01:54:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 01:54:39] Running /usr/bin/apptainer --version
[2025-06-05 01:54:39] apptainer version 1.3.6-6.1
[2025-06-05 01:54:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 01:54:39] cosA127b
[2025-06-05 01:54:39] apptainer works
[2025-06-05 01:54:39] Set ATHENA_PROC_NUMBER=3
[2025-06-05 01:54:39] Set ATHENA_CORE_NUMBER=3
[2025-06-05 01:54:39] Starting ATLAS job with PandaID=6679100619
[2025-06-05 01:54:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 03:07:16]  *** The last 200 lines of the pilot log: ***
[2025-06-05 03:07:16]  is_altstaged=None
[2025-06-05 03:07:16]  is_tar=False
[2025-06-05 03:07:16]  lfn=log.45006595._055852.job.log.tgz.1
[2025-06-05 03:07:16]  mtime=0
[2025-06-05 03:07:16]  protocol_id=None
[2025-06-05 03:07:16]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-05 03:07:16]  replicas=None
[2025-06-05 03:07:16]  scope=mc23_13p6TeV
[2025-06-05 03:07:16]  status=None
[2025-06-05 03:07:16]  status_code=0
[2025-06-05 03:07:16]  storage_token=
[2025-06-05 03:07:16]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6679100619/log.45006595._055852.job.log.tgz.1
[2025-06-05 03:07:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/13/5a/log.45006595._055852.job.log.tgz.1
[2025-06-05 03:07:16]  workdir=None
[2025-06-05 03:07:16] ]
[2025-06-05 03:07:16] 2025-06-05 01:06:47,995 | INFO     | transferring file log.45006595._055852.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6679100619/log.45006595._055852.job.log.tgz.1 to /local/data/boinc/
[2025-06-05 03:07:16] 2025-06-05 01:06:47,996 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6679100619/log.45006595._055852.job.log.tgz.1 /local/data/boinc/slots/0/log.45006595._0558
[2025-06-05 03:07:16] 2025-06-05 01:06:48,007 | INFO     | adding to output.list: log.45006595._055852.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/13/5a/log.45006595._055852.job.log.tg
[2025-06-05 03:07:16] 2025-06-05 01:06:48,008 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 03:07:16] 2025-06-05 01:06:48,008 | INFO     | summary of transferred files:
[2025-06-05 03:07:16] 2025-06-05 01:06:48,008 | INFO     |  -- lfn=log.45006595._055852.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 03:07:16] 2025-06-05 01:06:48,008 | INFO     | stage-out finished correctly
[2025-06-05 03:07:16] 2025-06-05 01:06:49,444 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 03:07:16] 2025-06-05 01:06:52,370 | INFO     | job 6679100619 has state=finished
[2025-06-05 03:07:16] 2025-06-05 01:06:52,370 | INFO     | preparing for final server update for job 6679100619 in state='finished'
[2025-06-05 03:07:16] 2025-06-05 01:06:52,686 | WARNING  | process 1961002 can no longer be monitored (due to stat problems) - aborting
[2025-06-05 03:07:16] 2025-06-05 01:06:52,686 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6679100619/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 03:07:16] 2025-06-05 01:06:52,725 | INFO     | number of running child processes to parent process 1961002: 1
[2025-06-05 03:07:16] 2025-06-05 01:06:52,725 | INFO     | maximum number of monitored processes: 6
[2025-06-05 03:07:16] 2025-06-05 01:06:52,961 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-06-05 03:07:16] 2025-06-05 01:06:52,961 | INFO     | this job has now completed (state=finished)
[2025-06-05 03:07:16] 2025-06-05 01:06:52,961 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 03:07:16] 2025-06-05 01:06:52,961 | INFO     | log transfer has been attempted: DONE
[2025-06-05 03:07:16] 2025-06-05 01:06:52,961 | INFO     | job 6679100619 has finished - writing final server update
[2025-06-05 03:07:16] 2025-06-05 01:06:52,962 | INFO     | total number of processed events: 400 (read)
[2025-06-05 03:07:16] 2025-06-05 01:06:52,962 | INFO     | executing command: lscpu
[2025-06-05 03:07:16] 2025-06-05 01:06:52,978 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 03:07:16] 2025-06-05 01:06:55,228 | INFO     | monitor loop #334: job 0:6679100619 is in state 'finished'
[2025-06-05 03:07:16] 2025-06-05 01:06:55,229 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 03:07:16] 2025-06-05 01:06:56,402 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 03:07:16] 2025-06-05 01:06:56,402 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6679100619/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 03:07:16] 2025-06-05 01:06:56,403 | INFO     | extracted standard info from prmon json
[2025-06-05 03:07:16] 2025-06-05 01:06:56,403 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 03:07:16] 2025-06-05 01:06:56,403 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 03:07:16] 2025-06-05 01:06:56,403 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 03:07:16] 2025-06-05 01:06:56,403 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 03:07:16] 2025-06-05 01:06:56,403 | INFO     | fitting pss+swap vs Time
[2025-06-05 03:07:16] 2025-06-05 01:06:56,404 | INFO     | sum of square deviations: 81266640.0
[2025-06-05 03:07:16] 2025-06-05 01:06:56,404 | INFO     | sum of deviations: -7869485438.0
[2025-06-05 03:07:16] 2025-06-05 01:06:56,404 | INFO     | mean x: 1749083530.5
[2025-06-05 03:07:16] 2025-06-05 01:06:56,404 | INFO     | mean y: 2441442.75
[2025-06-05 03:07:16] 2025-06-05 01:06:56,404 | INFO     | -- intersect: 169375598412.3919
[2025-06-05 03:07:16] 2025-06-05 01:06:56,404 | INFO     | intersect: 169375598412.3919
[2025-06-05 03:07:16] 2025-06-05 01:06:56,404 | INFO     | chi2: 0.1330171538579964
[2025-06-05 03:07:16] 2025-06-05 01:06:56,404 | INFO     | -- intersect: 169375598412.3919
[2025-06-05 03:07:16] 2025-06-05 01:06:56,404 | INFO     | current memory leak: -96.84 B/s (using 64 data points, chi2=0.13)
[2025-06-05 03:07:16] 2025-06-05 01:06:56,404 | INFO     | ..............................
[2025-06-05 03:07:16] 2025-06-05 01:06:56,404 | INFO     | . Timing measurements:
[2025-06-05 03:07:16] 2025-06-05 01:06:56,404 | INFO     | . get job = 0 s
[2025-06-05 03:07:16] 2025-06-05 01:06:56,404 | INFO     | . initial setup = 1 s
[2025-06-05 03:07:16] 2025-06-05 01:06:56,404 | INFO     | . payload setup = 3 s
[2025-06-05 03:07:16] 2025-06-05 01:06:56,404 | INFO     | . stage-in = 0 s
[2025-06-05 03:07:16] 2025-06-05 01:06:56,404 | INFO     | . payload execution = 4302 s
[2025-06-05 03:07:16] 2025-06-05 01:06:56,404 | INFO     | . stage-out = 0 s
[2025-06-05 03:07:16] 2025-06-05 01:06:56,404 | INFO     | . log creation = 0 s
[2025-06-05 03:07:16] 2025-06-05 01:06:56,404 | INFO     | ..............................
[2025-06-05 03:07:16] 2025-06-05 01:06:56,608 | INFO     | 
[2025-06-05 03:07:16] 2025-06-05 01:06:56,609 | INFO     | job summary report
[2025-06-05 03:07:16] 2025-06-05 01:06:56,609 | INFO     | --------------------------------------------------
[2025-06-05 03:07:16] 2025-06-05 01:06:56,609 | INFO     | PanDA job id: 6679100619
[2025-06-05 03:07:16] 2025-06-05 01:06:56,609 | INFO     | task id: 45006595
[2025-06-05 03:07:16] 2025-06-05 01:06:56,609 | INFO     | errors: (none)
[2025-06-05 03:07:16] 2025-06-05 01:06:56,609 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 03:07:16] 2025-06-05 01:06:56,609 | INFO     | pilot state: finished 
[2025-06-05 03:07:16] 2025-06-05 01:06:56,609 | INFO     | transexitcode: 0
[2025-06-05 03:07:16] 2025-06-05 01:06:56,609 | INFO     | exeerrorcode: 0
[2025-06-05 03:07:16] 2025-06-05 01:06:56,609 | INFO     | exeerrordiag: 
[2025-06-05 03:07:16] 2025-06-05 01:06:56,609 | INFO     | exitcode: 0
[2025-06-05 03:07:16] 2025-06-05 01:06:56,609 | INFO     | exitmsg: OK
[2025-06-05 03:07:16] 2025-06-05 01:06:56,609 | INFO     | cpuconsumptiontime: 12298 s
[2025-06-05 03:07:16] 2025-06-05 01:06:56,609 | INFO     | nevents: 400
[2025-06-05 03:07:16] 2025-06-05 01:06:56,609 | INFO     | neventsw: 0
[2025-06-05 03:07:16] 2025-06-05 01:06:56,609 | INFO     | pid: 1961002
[2025-06-05 03:07:16] 2025-06-05 01:06:56,609 | INFO     | pgrp: 1961002
[2025-06-05 03:07:16] 2025-06-05 01:06:56,609 | INFO     | corecount: 3
[2025-06-05 03:07:16] 2025-06-05 01:06:56,609 | INFO     | event service: False
[2025-06-05 03:07:16] 2025-06-05 01:06:56,610 | INFO     | sizes: {0: 2397244, 2: 2397450, 10: 2397478, 4308: 2423535, 4310: 2432482, 4311: 2432538, 4318: 2432836}
[2025-06-05 03:07:16] 2025-06-05 01:06:56,610 | INFO     | --------------------------------------------------
[2025-06-05 03:07:16] 2025-06-05 01:06:56,610 | INFO     | 
[2025-06-05 03:07:16] 2025-06-05 01:06:56,610 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-06-05 03:07:16] 2025-06-05 01:06:56,625 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 03:07:16] 2025-06-05 01:06:56,625 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 03:07:16] 2025-06-05 01:06:56,625 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 03:07:16] 2025-06-05 01:06:56,625 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 03:07:16] 2025-06-05 01:06:56,626 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 03:07:16] 2025-06-05 01:06:56,626 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 03:07:16] 2025-06-05 01:06:56,626 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 03:07:16] 2025-06-05 01:06:56,626 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 03:07:16] 2025-06-05 01:06:56,626 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 03:07:16] 2025-06-05 01:06:56,626 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 03:07:16] 2025-06-05 01:06:56,626 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 03:07:16] 2025-06-05 01:06:56,626 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 03:07:16] 2025-06-05 01:06:56,626 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 03:07:16] 2025-06-05 01:06:56,626 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 03:07:16] 2025-06-05 01:06:56,626 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 03:07:16] 2025-06-05 01:06:56,626 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 03:07:16] 2025-06-05 01:06:56,626 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 03:07:16] 2025-06-05 01:06:56,626 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 03:07:16] 2025-06-05 01:06:56,626 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 03:07:16] 2025-06-05 01:06:56,626 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 03:07:16] 2025-06-05 01:06:56,626 | INFO     | job 6679100619 has completed (purged errors)
[2025-06-05 03:07:16] 2025-06-05 01:06:56,626 | INFO     | overall cleanup function is called
[2025-06-05 03:07:16] 2025-06-05 01:06:57,632 | INFO     | --- collectZombieJob: --- 10, [1961002]
[2025-06-05 03:07:16] 2025-06-05 01:06:57,632 | INFO     | zombie collector waiting for pid 1961002
[2025-06-05 03:07:16] 2025-06-05 01:06:57,632 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 03:07:16] 2025-06-05 01:06:57,632 | INFO     | collected zombie processes
[2025-06-05 03:07:16] 2025-06-05 01:06:57,632 | INFO     | will attempt to kill all subprocesses of pid=1961002
[2025-06-05 03:07:16] 2025-06-05 01:06:57,679 | INFO     | process IDs to be killed: [1961002] (in reverse order)
[2025-06-05 03:07:16] 2025-06-05 01:06:57,704 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 03:07:16] 2025-06-05 01:06:57,704 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 03:07:16] 2025-06-05 01:06:57,706 | INFO     | did not find any defunct processes belonging to 1961002
[2025-06-05 03:07:16] 2025-06-05 01:06:57,707 | INFO     | did not find any defunct processes belonging to 1961002
[2025-06-05 03:07:16] 2025-06-05 01:06:57,707 | INFO     | ready for new job
[2025-06-05 03:07:16] 2025-06-05 01:06:57,707 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 03:07:16] 2025-06-05 01:06:57,708 | INFO     | **************************************
[2025-06-05 03:07:16] 2025-06-05 01:06:57,708 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 03:07:16] 2025-06-05 01:06:57,708 | INFO     | **************************************
[2025-06-05 03:07:16] 2025-06-05 01:06:57,708 | INFO     | 
[2025-06-05 03:07:16] 2025-06-05 01:06:57,708 | INFO     | architecture information:
[2025-06-05 03:07:16] 2025-06-05 01:06:57,708 | INFO     | executing command: cat /etc/os-release
[2025-06-05 03:07:16] 2025-06-05 01:06:57,717 | INFO     | cat /etc/os-release:
[2025-06-05 03:07:16] NAME="CentOS Linux"
[2025-06-05 03:07:16] VERSION="7 (Core)"
[2025-06-05 03:07:16] ID="centos"
[2025-06-05 03:07:16] ID_LIKE="rhel fedora"
[2025-06-05 03:07:16] VERSION_ID="7"
[2025-06-05 03:07:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 03:07:16] ANSI_COLOR="0;31"
[2025-06-05 03:07:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 03:07:16] HOME_URL="https://www.centos.org/"
[2025-06-05 03:07:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 03:07:16] 
[2025-06-05 03:07:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 03:07:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 03:07:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 03:07:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 03:07:16] 
[2025-06-05 03:07:16] 2025-06-05 01:06:57,717 | INFO     | **************************************
[2025-06-05 03:07:16] 2025-06-05 01:06:58,220 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-06-05 03:07:16] 2025-06-05 01:06:58,234 | INFO     | sufficient remaining disk space (345404080128 B)
[2025-06-05 03:07:16] 2025-06-05 01:06:58,234 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 03:07:16] 2025-06-05 01:06:58,234 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 03:07:16] 2025-06-05 01:06:58,234 | INFO     | update_server=False
[2025-06-05 03:07:16] 2025-06-05 01:06:58,235 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 03:07:16] 2025-06-05 01:06:58,235 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 03:07:16] 2025-06-05 01:06:58,285 | INFO     | PID=1954510 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-05 03:07:16] 2025-06-05 01:06:58,285 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 03:07:16] 2025-06-05 01:06:58,285 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 03:07:16] 2025-06-05 01:06:58,285 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 03:07:16] 2025-06-05 01:06:58,532 | INFO     | all data control threads have been joined
[2025-06-05 03:07:16] 2025-06-05 01:06:58,553 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 03:07:16] 2025-06-05 01:06:58,734 | INFO     | all payload control threads have been joined
[2025-06-05 03:07:16] 2025-06-05 01:06:58,737 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 03:07:16] 2025-06-05 01:06:58,737 | INFO     | aborting loop
[2025-06-05 03:07:16] 2025-06-05 01:06:59,152 | INFO     | all job control threads have been joined
[2025-06-05 03:07:16] 2025-06-05 01:06:59,239 | INFO     | [job] queue monitor thread has finished
[2025-06-05 03:07:16] 2025-06-05 01:06:59,239 | INFO     | [job] retrieve thread has finished
[2025-06-05 03:07:16] 2025-06-05 01:06:59,533 | INFO     | [data] control thread has finished
[2025-06-05 03:07:16] 2025-06-05 01:06:59,739 | INFO     | [payload] control thread has finished
[2025-06-05 03:07:16] 2025-06-05 01:06:59,743 | INFO     | [job] job monitor thread has finished
[2025-06-05 03:07:16] 2025-06-05 01:06:59,902 | INFO     | [payload] failed_post thread has finished
[2025-06-05 03:07:16] 2025-06-05 01:06:59,988 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 03:07:16] 2025-06-05 01:07:00,042 | INFO     | [data] copytool_in thread has finished
[2025-06-05 03:07:16] 2025-06-05 01:07:00,157 | INFO     | [job] control thread has finished
[2025-06-05 03:07:16] 2025-06-05 01:07:00,427 | INFO     | [payload] validate_post thread has finished
[2025-06-05 03:07:16] 2025-06-05 01:07:00,523 | INFO     | [job] validate thread has finished
[2025-06-05 03:07:16] 2025-06-05 01:07:00,559 | INFO     | [data] copytool_out thread has finished
[2025-06-05 03:07:16] 2025-06-05 01:07:00,656 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 03:07:16] 2025-06-05 01:07:00,660 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 03:07:16] 2025-06-05 01:07:00,702 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 03:07:16] 2025-06-05 01:07:03,995 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 03:07:16] 2025-06-05 01:07:08,940 | INFO     | job.realtimelogging is not enabled
[2025-06-05 03:07:16] 2025-06-05 01:07:09,946 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 03:07:16] 2025-06-05 01:07:11,193 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139659909879616)>', '<ExcThread(monitor, started 139659535423232)>']
[2025-06-05 03:07:16] 2025-06-05 01:07:11,345 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 03:07:16] 2025-06-05 01:07:11,345 | INFO     | [monitor] control thread has ended
[2025-06-05 03:07:16] 2025-06-05 01:07:16,210 | INFO     | all workflow threads have been joined
[2025-06-05 03:07:16] 2025-06-05 01:07:16,210 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 03:07:16] 2025-06-05 01:07:16,210 | INFO     | traces error code: 0
[2025-06-05 03:07:16] 2025-06-05 01:07:16,210 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 03:07:16] 2025-06-05 01:07:16,261 [wrapper] ==== pilot stdout END ====
[2025-06-05 03:07:16] 2025-06-05 01:07:16,264 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 03:07:16] 2025-06-05 01:07:16,266 [wrapper] pilotpid: 1954510
[2025-06-05 03:07:16] 2025-06-05 01:07:16,268 [wrapper] Pilot exit status: 0
[2025-06-05 03:07:16] 2025-06-05 01:07:16,275 [wrapper] pandaids: 6679100619
[2025-06-05 03:07:16] 2025-06-05 01:07:16,292 [wrapper] cleanup supervisor_pilot 1970494 1954511
[2025-06-05 03:07:16] 2025-06-05 01:07:16,294 [wrapper] Test setup, not cleaning
[2025-06-05 03:07:16] 2025-06-05 01:07:16,296 [wrapper] apfmon messages muted
[2025-06-05 03:07:16] 2025-06-05 01:07:16,299 [wrapper] ==== wrapper stdout END ====
[2025-06-05 03:07:16] 2025-06-05 01:07:16,301 [wrapper] ==== wrapper stderr END ====
[2025-06-05 03:07:16]  *** Error codes and diagnostics ***
[2025-06-05 03:07:16]     "exeErrorCode": 0,
[2025-06-05 03:07:16]     "exeErrorDiag": "",
[2025-06-05 03:07:16]     "pilotErrorCode": 0,
[2025-06-05 03:07:16]     "pilotErrorDiag": "",
[2025-06-05 03:07:16]  *** Listing of results directory ***
[2025-06-05 03:07:16] total 385316
[2025-06-05 03:07:16] -rw-r--r-- 1 boinc boinc    495897 Jun  4 10:46 pilot3.tar.gz
[2025-06-05 03:07:16] -rw-r--r-- 1 boinc boinc      5111 Jun  4 10:48 queuedata.json
[2025-06-05 03:07:16] -rwx------ 1 boinc boinc     37140 Jun  4 10:48 runpilot2-wrapper.sh
[2025-06-05 03:07:16] -rw-r--r-- 1 boinc boinc       100 Jun  5 01:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 03:07:16] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 01:54 run_atlas
[2025-06-05 03:07:16] -rw-r--r-- 1 boinc boinc       105 Jun  5 01:54 job.xml
[2025-06-05 03:07:16] -rw-r--r-- 2 boinc boinc 215602831 Jun  5 01:54 EVNT.45006593._001319.pool.root.1
[2025-06-05 03:07:16] -rw-r--r-- 1 boinc boinc      6921 Jun  5 01:54 init_data.xml
[2025-06-05 03:07:16] drwxrwx--x 2 boinc boinc      4096 Jun  5 01:54 shared
[2025-06-05 03:07:16] -rw-r--r-- 2 boinc boinc    508884 Jun  5 01:54 input.tar.gz
[2025-06-05 03:07:16] -rw-r--r-- 2 boinc boinc     15093 Jun  5 01:54 start_atlas.sh
[2025-06-05 03:07:16] -rw-r--r-- 1 boinc boinc         0 Jun  5 01:54 boinc_lockfile
[2025-06-05 03:07:16] -rw-r--r-- 1 boinc boinc      2524 Jun  5 01:54 pandaJob.out
[2025-06-05 03:07:16] -rw------- 1 boinc boinc    987117 Jun  5 01:54 agis_schedconf.cvmfs.json
[2025-06-05 03:07:16] -rw------- 1 boinc boinc   1598969 Jun  5 01:54 agis_ddmendpoints.agis.ALL.json
[2025-06-05 03:07:16] drwx------ 4 boinc boinc      4096 Jun  5 01:54 pilot3
[2025-06-05 03:07:16] -rw------- 1 boinc boinc        95 Jun  5 03:06 pilot_heartbeat.json
[2025-06-05 03:07:16] -rw------- 1 boinc boinc 173833251 Jun  5 03:06 HITS.45006595._055852.pool.root.1
[2025-06-05 03:07:16] -rw-r--r-- 1 boinc boinc       529 Jun  5 03:06 boinc_task_state.xml
[2025-06-05 03:07:16] -rw------- 1 boinc boinc      1020 Jun  5 03:06 memory_monitor_summary.json
[2025-06-05 03:07:16] -rw------- 1 boinc boinc    219260 Jun  5 03:06 log.45006595._055852.job.log.tgz.1
[2025-06-05 03:07:16] -rw-r--r-- 1 boinc boinc      8192 Jun  5 03:06 boinc_mmap_file
[2025-06-05 03:07:16] -rw-r--r-- 1 boinc boinc        27 Jun  5 03:06 wrapper_checkpoint.txt
[2025-06-05 03:07:16] -rw------- 1 boinc boinc      7664 Jun  5 03:06 heartbeat.json
[2025-06-05 03:07:16] -rw------- 1 boinc boinc      4748 Jun  5 03:07 pilotlog.txt
[2025-06-05 03:07:16] -rw------- 1 boinc boinc    426990 Jun  5 03:07 log.45006595._055852.job.log.1
[2025-06-05 03:07:16] -rw------- 1 boinc boinc       357 Jun  5 03:07 output.list
[2025-06-05 03:07:16] -rw-r--r-- 1 boinc boinc       620 Jun  5 03:07 runtime_log
[2025-06-05 03:07:16] -rw------- 1 boinc boinc    665600 Jun  5 03:07 result.tar.gz
[2025-06-05 03:07:16] -rw-r--r-- 1 boinc boinc      8743 Jun  5 03:07 runtime_log.err
[2025-06-05 03:07:16] -rw------- 1 boinc boinc       660 Jun  5 03:07 Oz9MDm3yyg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmMpnKDm8NJSIm.diag
[2025-06-05 03:07:16] -rw-r--r-- 1 boinc boinc     21466 Jun  5 03:07 stderr.txt
[2025-06-05 03:07:16] HITS file was successfully produced:
[2025-06-05 03:07:16] -rw------- 1 boinc boinc 173833251 Jun  5 03:06 shared/HITS.pool.root.1
[2025-06-05 03:07:16]  *** Contents of shared directory: ***
[2025-06-05 03:07:16] total 381488
[2025-06-05 03:07:16] -rw-r--r-- 2 boinc boinc 215602831 Jun  5 01:54 ATLAS.root_0
[2025-06-05 03:07:16] -rw-r--r-- 2 boinc boinc    508884 Jun  5 01:54 input.tar.gz
[2025-06-05 03:07:16] -rw-r--r-- 2 boinc boinc     15093 Jun  5 01:54 start_atlas.sh
[2025-06-05 03:07:16] -rw------- 1 boinc boinc 173833251 Jun  5 03:06 HITS.pool.root.1
[2025-06-05 03:07:16] -rw------- 1 boinc boinc    665600 Jun  5 03:07 result.tar.gz
03:07:18 (1950872): run_atlas exited; CPU time 12311.206041
03:07:18 (1950872): called boinc_finish(0)

</stderr_txt>
]]>

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