Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:56:16 (66211): wrapper (7.7.26015): starting
09:56:16 (66211): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 09:56:16] Arguments: --nthreads 8
[2025-06-04 09:56:16] Threads: 8
[2025-06-04 09:56:16] Checking for CVMFS
[2025-06-04 09:56:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 09:56:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 09:56:17] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 09:56:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 09:56:17] 2.11.2.0 96941 12764 296272 146781 0 198 15352754 18432001 15602 130560 0 69915775 99.582 54462808 45052 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 09:56:17] CVMFS is ok
[2025-06-04 09:56:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 09:56:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 09:56:17] Further information can be found at the LHC@home message board.
[2025-06-04 09:56:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 09:56:17] Checking for apptainer binary...
[2025-06-04 09:56:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 09:56:17] Running /usr/bin/apptainer --version
[2025-06-04 09:56:18] apptainer version 1.3.2-1.el7
[2025-06-04 09:56:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 09:56:19] c-212-6.aglt2.org
[2025-06-04 09:56:19] apptainer works
[2025-06-04 09:56:19] Set ATHENA_PROC_NUMBER=8
[2025-06-04 09:56:19] Set ATHENA_CORE_NUMBER=8
[2025-06-04 09:56:19] Starting ATLAS job with PandaID=6679100185
[2025-06-04 09:56:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 11:32:39]  *** The last 200 lines of the pilot log: ***
[2025-06-04 11:32:39]  is_tar=False
[2025-06-04 11:32:39]  lfn=log.45006595._055821.job.log.tgz.1
[2025-06-04 11:32:39]  mtime=0
[2025-06-04 11:32:39]  protocol_id=None
[2025-06-04 11:32:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 11:32:39]  replicas=None
[2025-06-04 11:32:39]  scope=mc23_13p6TeV
[2025-06-04 11:32:39]  status=None
[2025-06-04 11:32:39]  status_code=0
[2025-06-04 11:32:39]  storage_token=
[2025-06-04 11:32:39]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6679100185/log.45006595._055821.job.log.tgz.1
[2025-06-04 11:32:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/04/b9/log.45006595._055821.job.log.tgz.1
[2025-06-04 11:32:39]  workdir=None
[2025-06-04 11:32:39] ]
[2025-06-04 11:32:39] 2025-06-04 15:32:13,928 | INFO     | transferring file log.45006595._055821.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6679100185/log.45006595._055821.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 11:32:39] 2025-06-04 15:32:13,928 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6679100185/log.45006595._055821.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._055821.job
[2025-06-04 11:32:39] 2025-06-04 15:32:13,946 | INFO     | adding to output.list: log.45006595._055821.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/04/b9/log.45006595._055821.job.log.tg
[2025-06-04 11:32:39] 2025-06-04 15:32:13,947 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 11:32:39] 2025-06-04 15:32:13,947 | INFO     | summary of transferred files:
[2025-06-04 11:32:39] 2025-06-04 15:32:13,947 | INFO     |  -- lfn=log.45006595._055821.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 11:32:39] 2025-06-04 15:32:13,947 | INFO     | stage-out finished correctly
[2025-06-04 11:32:39] 2025-06-04 15:32:14,753 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 11:32:39] 2025-06-04 15:32:15,208 | INFO     | job 6679100185 has state=finished
[2025-06-04 11:32:39] 2025-06-04 15:32:15,208 | INFO     | preparing for final server update for job 6679100185 in state='finished'
[2025-06-04 11:32:39] 2025-06-04 15:32:15,208 | INFO     | this job has now completed (state=finished)
[2025-06-04 11:32:39] 2025-06-04 15:32:15,209 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 11:32:39] 2025-06-04 15:32:15,209 | INFO     | log transfer has been attempted: DONE
[2025-06-04 11:32:39] 2025-06-04 15:32:15,209 | INFO     | job 6679100185 has finished - writing final server update
[2025-06-04 11:32:39] 2025-06-04 15:32:15,209 | INFO     | total number of processed events: 400 (read)
[2025-06-04 11:32:39] 2025-06-04 15:32:15,213 | INFO     | executing command: lscpu
[2025-06-04 11:32:39] 2025-06-04 15:32:15,250 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 11:32:39] 2025-06-04 15:32:15,489 | INFO     | monitor loop #420: job 0:6679100185 is in state 'finished'
[2025-06-04 11:32:39] 2025-06-04 15:32:15,489 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 11:32:39] 2025-06-04 15:32:17,992 | INFO     | monitor loop #421: job 0:6679100185 is in state 'finished'
[2025-06-04 11:32:39] 2025-06-04 15:32:17,992 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 11:32:39] 2025-06-04 15:32:18,097 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 11:32:39] 2025-06-04 15:32:18,097 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6679100185/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 11:32:39] 2025-06-04 15:32:18,098 | INFO     | extracted standard info from prmon json
[2025-06-04 11:32:39] 2025-06-04 15:32:18,098 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 11:32:39] 2025-06-04 15:32:18,098 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 11:32:39] 2025-06-04 15:32:18,098 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 11:32:39] 2025-06-04 15:32:18,098 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 11:32:39] 2025-06-04 15:32:18,099 | INFO     | fitting pss+swap vs Time
[2025-06-04 11:32:39] 2025-06-04 15:32:18,100 | INFO     | sum of square deviations: 204165659.95402288
[2025-06-04 11:32:39] 2025-06-04 15:32:18,100 | INFO     | sum of deviations: -1113571384.586207
[2025-06-04 11:32:39] 2025-06-04 15:32:18,100 | INFO     | mean x: 1749048379.0229886
[2025-06-04 11:32:39] 2025-06-04 15:32:18,100 | INFO     | mean y: 2494167.793103448
[2025-06-04 11:32:39] 2025-06-04 15:32:18,100 | INFO     | -- intersect: 9542248431.930866
[2025-06-04 11:32:39] 2025-06-04 15:32:18,100 | INFO     | intersect: 9542248431.930866
[2025-06-04 11:32:39] 2025-06-04 15:32:18,100 | INFO     | chi2: 0.0031975346628303554
[2025-06-04 11:32:39] 2025-06-04 15:32:18,100 | INFO     | -- intersect: 9542248431.930866
[2025-06-04 11:32:39] 2025-06-04 15:32:18,100 | INFO     | current memory leak: -5.45 B/s (using 87 data points, chi2=0.00)
[2025-06-04 11:32:39] 2025-06-04 15:32:18,100 | INFO     | ..............................
[2025-06-04 11:32:39] 2025-06-04 15:32:18,100 | INFO     | . Timing measurements:
[2025-06-04 11:32:39] 2025-06-04 15:32:18,101 | INFO     | . get job = 0 s
[2025-06-04 11:32:39] 2025-06-04 15:32:18,101 | INFO     | . initial setup = 2 s
[2025-06-04 11:32:39] 2025-06-04 15:32:18,101 | INFO     | . payload setup = 12 s
[2025-06-04 11:32:39] 2025-06-04 15:32:18,101 | INFO     | . stage-in = 0 s
[2025-06-04 11:32:39] 2025-06-04 15:32:18,101 | INFO     | . payload execution = 5690 s
[2025-06-04 11:32:39] 2025-06-04 15:32:18,101 | INFO     | . stage-out = 0 s
[2025-06-04 11:32:39] 2025-06-04 15:32:18,101 | INFO     | . log creation = 0 s
[2025-06-04 11:32:39] 2025-06-04 15:32:18,101 | INFO     | ..............................
[2025-06-04 11:32:39] 2025-06-04 15:32:18,151 | INFO     | 
[2025-06-04 11:32:39] 2025-06-04 15:32:18,152 | INFO     | job summary report
[2025-06-04 11:32:39] 2025-06-04 15:32:18,152 | INFO     | --------------------------------------------------
[2025-06-04 11:32:39] 2025-06-04 15:32:18,152 | INFO     | PanDA job id: 6679100185
[2025-06-04 11:32:39] 2025-06-04 15:32:18,152 | INFO     | task id: 45006595
[2025-06-04 11:32:39] 2025-06-04 15:32:18,152 | INFO     | errors: (none)
[2025-06-04 11:32:39] 2025-06-04 15:32:18,152 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 11:32:39] 2025-06-04 15:32:18,152 | INFO     | pilot state: finished 
[2025-06-04 11:32:39] 2025-06-04 15:32:18,152 | INFO     | transexitcode: 0
[2025-06-04 11:32:39] 2025-06-04 15:32:18,152 | INFO     | exeerrorcode: 0
[2025-06-04 11:32:39] 2025-06-04 15:32:18,152 | INFO     | exeerrordiag: 
[2025-06-04 11:32:39] 2025-06-04 15:32:18,152 | INFO     | exitcode: 0
[2025-06-04 11:32:39] 2025-06-04 15:32:18,152 | INFO     | exitmsg: OK
[2025-06-04 11:32:39] 2025-06-04 15:32:18,152 | INFO     | cpuconsumptiontime: 30207 s
[2025-06-04 11:32:39] 2025-06-04 15:32:18,152 | INFO     | nevents: 400
[2025-06-04 11:32:39] 2025-06-04 15:32:18,153 | INFO     | neventsw: 0
[2025-06-04 11:32:39] 2025-06-04 15:32:18,153 | INFO     | pid: 83879
[2025-06-04 11:32:39] 2025-06-04 15:32:18,153 | INFO     | pgrp: 83879
[2025-06-04 11:32:39] 2025-06-04 15:32:18,153 | INFO     | corecount: 8
[2025-06-04 11:32:39] 2025-06-04 15:32:18,153 | INFO     | event service: False
[2025-06-04 11:32:39] 2025-06-04 15:32:18,153 | INFO     | sizes: {0: 2397172, 1: 2397314, 10: 2397520, 11: 2397548, 5706: 2424076, 5707: 2433200, 5708: 2433200, 5711: 2433370}
[2025-06-04 11:32:39] 2025-06-04 15:32:18,153 | INFO     | --------------------------------------------------
[2025-06-04 11:32:39] 2025-06-04 15:32:18,153 | INFO     | 
[2025-06-04 11:32:39] 2025-06-04 15:32:18,153 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 11:32:39] 2025-06-04 15:32:18,171 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 11:32:39] 2025-06-04 15:32:18,171 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 11:32:39] 2025-06-04 15:32:18,171 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 11:32:39] 2025-06-04 15:32:18,171 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 11:32:39] 2025-06-04 15:32:18,171 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 11:32:39] 2025-06-04 15:32:18,171 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 11:32:39] 2025-06-04 15:32:18,171 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 11:32:39] 2025-06-04 15:32:18,171 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 11:32:39] 2025-06-04 15:32:18,171 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 11:32:39] 2025-06-04 15:32:18,171 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 11:32:39] 2025-06-04 15:32:18,171 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 11:32:39] 2025-06-04 15:32:18,171 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 11:32:39] 2025-06-04 15:32:18,172 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 11:32:39] 2025-06-04 15:32:18,172 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 11:32:39] 2025-06-04 15:32:18,172 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 11:32:39] 2025-06-04 15:32:18,172 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 11:32:39] 2025-06-04 15:32:18,172 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 11:32:39] 2025-06-04 15:32:18,172 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 11:32:39] 2025-06-04 15:32:18,172 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 11:32:39] 2025-06-04 15:32:18,172 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 11:32:39] 2025-06-04 15:32:18,172 | INFO     | job 6679100185 has completed (purged errors)
[2025-06-04 11:32:39] 2025-06-04 15:32:18,172 | INFO     | overall cleanup function is called
[2025-06-04 11:32:39] 2025-06-04 15:32:19,063 | INFO     | PID=71762 has CPU usage=8.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-04 11:32:39] 2025-06-04 15:32:19,063 | INFO     | .. there are 18 such processes running
[2025-06-04 11:32:39] 2025-06-04 15:32:19,179 | INFO     | --- collectZombieJob: --- 10, [83879]
[2025-06-04 11:32:39] 2025-06-04 15:32:19,179 | INFO     | zombie collector waiting for pid 83879
[2025-06-04 11:32:39] 2025-06-04 15:32:19,179 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 11:32:39] 2025-06-04 15:32:19,179 | INFO     | collected zombie processes
[2025-06-04 11:32:39] 2025-06-04 15:32:19,179 | INFO     | will attempt to kill all subprocesses of pid=83879
[2025-06-04 11:32:39] 2025-06-04 15:32:19,372 | INFO     | process IDs to be killed: [83879] (in reverse order)
[2025-06-04 11:32:39] 2025-06-04 15:32:19,453 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 11:32:39] 2025-06-04 15:32:19,453 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 11:32:39] 2025-06-04 15:32:19,459 | INFO     | did not find any defunct processes belonging to 83879
[2025-06-04 11:32:39] 2025-06-04 15:32:19,463 | INFO     | did not find any defunct processes belonging to 83879
[2025-06-04 11:32:39] 2025-06-04 15:32:19,463 | INFO     | ready for new job
[2025-06-04 11:32:39] 2025-06-04 15:32:19,464 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 11:32:39] 2025-06-04 15:32:19,465 | INFO     | **************************************
[2025-06-04 11:32:39] 2025-06-04 15:32:19,465 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 11:32:39] 2025-06-04 15:32:19,465 | INFO     | **************************************
[2025-06-04 11:32:39] 2025-06-04 15:32:19,465 | INFO     | 
[2025-06-04 11:32:39] 2025-06-04 15:32:19,468 | INFO     | architecture information:
[2025-06-04 11:32:39] 2025-06-04 15:32:19,468 | INFO     | executing command: cat /etc/os-release
[2025-06-04 11:32:39] 2025-06-04 15:32:19,479 | INFO     | cat /etc/os-release:
[2025-06-04 11:32:39] NAME="CentOS Linux"
[2025-06-04 11:32:39] VERSION="7 (Core)"
[2025-06-04 11:32:39] ID="centos"
[2025-06-04 11:32:39] ID_LIKE="rhel fedora"
[2025-06-04 11:32:39] VERSION_ID="7"
[2025-06-04 11:32:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 11:32:39] ANSI_COLOR="0;31"
[2025-06-04 11:32:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 11:32:39] HOME_URL="https://www.centos.org/"
[2025-06-04 11:32:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 11:32:39] 
[2025-06-04 11:32:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 11:32:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 11:32:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 11:32:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 11:32:39] 
[2025-06-04 11:32:39] 2025-06-04 15:32:19,480 | INFO     | **************************************
[2025-06-04 11:32:39] 2025-06-04 15:32:19,983 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 11:32:39] 2025-06-04 15:32:19,997 | INFO     | sufficient remaining disk space (103654883328 B)
[2025-06-04 11:32:39] 2025-06-04 15:32:19,997 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 11:32:39] 2025-06-04 15:32:19,997 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 11:32:39] 2025-06-04 15:32:19,998 | INFO     | update_server=False
[2025-06-04 11:32:39] 2025-06-04 15:32:19,998 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 11:32:39] 2025-06-04 15:32:19,998 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 11:32:39] 2025-06-04 15:32:19,998 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:32:39] 2025-06-04 15:32:19,998 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 11:32:39] 2025-06-04 15:32:19,999 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 11:32:39] 2025-06-04 15:32:19,999 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 11:32:39] 2025-06-04 15:32:19,999 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 11:32:39] 2025-06-04 15:32:20,011 | INFO     | all job control threads have been joined
[2025-06-04 11:32:39] 2025-06-04 15:32:20,300 | INFO     | all payload control threads have been joined
[2025-06-04 11:32:39] 2025-06-04 15:32:20,497 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 11:32:39] 2025-06-04 15:32:20,497 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 11:32:39] 2025-06-04 15:32:20,497 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:32:39] 2025-06-04 15:32:20,497 | INFO     | will abort loop
[2025-06-04 11:32:39] 2025-06-04 15:32:20,822 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 11:32:39] 2025-06-04 15:32:20,867 | INFO     | all data control threads have been joined
[2025-06-04 11:32:39] 2025-06-04 15:32:21,003 | INFO     | [job] retrieve thread has finished
[2025-06-04 11:32:39] 2025-06-04 15:32:21,004 | INFO     | [job] queue monitor thread has finished
[2025-06-04 11:32:39] 2025-06-04 15:32:21,017 | INFO     | [job] control thread has finished
[2025-06-04 11:32:39] 2025-06-04 15:32:21,238 | INFO     | [data] copytool_in thread has finished
[2025-06-04 11:32:39] 2025-06-04 15:32:21,268 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 11:32:39] 2025-06-04 15:32:21,302 | INFO     | [payload] control thread has finished
[2025-06-04 11:32:39] 2025-06-04 15:32:21,503 | INFO     | [job] job monitor thread has finished
[2025-06-04 11:32:39] 2025-06-04 15:32:21,872 | INFO     | [data] control thread has finished
[2025-06-04 11:32:39] 2025-06-04 15:32:22,004 | INFO     | [data] copytool_out thread has finished
[2025-06-04 11:32:39] 2025-06-04 15:32:22,090 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 11:32:39] 2025-06-04 15:32:22,207 | INFO     | [payload] failed_post thread has finished
[2025-06-04 11:32:39] 2025-06-04 15:32:22,335 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 11:32:39] 2025-06-04 15:32:22,341 | INFO     | [payload] validate_post thread has finished
[2025-06-04 11:32:39] 2025-06-04 15:32:22,428 | INFO     | [job] validate thread has finished
[2025-06-04 11:32:39] 2025-06-04 15:32:24,826 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 11:32:39] 2025-06-04 15:32:30,979 | INFO     | job.realtimelogging is not enabled
[2025-06-04 11:32:39] 2025-06-04 15:32:31,984 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 11:32:39] 2025-06-04 15:32:33,786 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140254578489152)>', '<ExcThread(monitor, started 140254270961408)>']
[2025-06-04 11:32:39] 2025-06-04 15:32:34,065 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 11:32:39] 2025-06-04 15:32:34,066 | INFO     | [monitor] control thread has ended
[2025-06-04 11:32:39] 2025-06-04 15:32:38,811 | INFO     | all workflow threads have been joined
[2025-06-04 11:32:39] 2025-06-04 15:32:38,812 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 11:32:39] 2025-06-04 15:32:38,812 | INFO     | traces error code: 0
[2025-06-04 11:32:39] 2025-06-04 15:32:38,812 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 11:32:39] 2025-06-04 15:32:38,908 [wrapper] ==== pilot stdout END ====
[2025-06-04 11:32:39] 2025-06-04 15:32:38,910 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 11:32:39] 2025-06-04 15:32:38,912 [wrapper] pilotpid: 71762
[2025-06-04 11:32:39] 2025-06-04 15:32:38,914 [wrapper] Pilot exit status: 0
[2025-06-04 11:32:39] 2025-06-04 15:32:38,920 [wrapper] pandaids: 6679100185
[2025-06-04 11:32:39] 2025-06-04 15:32:38,975 [wrapper] cleanup supervisor_pilot 83615 71763
[2025-06-04 11:32:39] 2025-06-04 15:32:38,977 [wrapper] Test setup, not cleaning
[2025-06-04 11:32:39] 2025-06-04 15:32:38,979 [wrapper] apfmon messages muted
[2025-06-04 11:32:39] 2025-06-04 15:32:38,985 [wrapper] ==== wrapper stdout END ====
[2025-06-04 11:32:39] 2025-06-04 15:32:38,987 [wrapper] ==== wrapper stderr END ====
[2025-06-04 11:32:39]  *** Error codes and diagnostics ***
[2025-06-04 11:32:39]     "exeErrorCode": 0,
[2025-06-04 11:32:39]     "exeErrorDiag": "",
[2025-06-04 11:32:39]     "pilotErrorCode": 0,
[2025-06-04 11:32:39]     "pilotErrorDiag": "",
[2025-06-04 11:32:39]  *** Listing of results directory ***
[2025-06-04 11:32:39] total 389560
[2025-06-04 11:32:39] -rw-r--r-- 1 boincer umatlas      5111 Jun  4 04:45 queuedata.json
[2025-06-04 11:32:39] -rwx------ 1 boincer umatlas     37140 Jun  4 04:46 runpilot2-wrapper.sh
[2025-06-04 11:32:39] -rw-r--r-- 1 boincer umatlas    495897 Jun  4 04:46 pilot3.tar.gz
[2025-06-04 11:32:39] -rw-r--r-- 1 boincer umatlas       100 Jun  4 09:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 11:32:39] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 09:56 run_atlas
[2025-06-04 11:32:39] -rw-r--r-- 1 boincer umatlas       105 Jun  4 09:56 job.xml
[2025-06-04 11:32:39] -rw-r--r-- 2 boincer umatlas 217335529 Jun  4 09:56 EVNT.45006593._000115.pool.root.1
[2025-06-04 11:32:39] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 09:56 start_atlas.sh
[2025-06-04 11:32:39] drwxrwx--x 2 boincer umatlas      4096 Jun  4 09:56 shared
[2025-06-04 11:32:39] -rw-r--r-- 2 boincer umatlas    508874 Jun  4 09:56 input.tar.gz
[2025-06-04 11:32:39] -rw-r--r-- 1 boincer umatlas         0 Jun  4 09:56 boinc_lockfile
[2025-06-04 11:32:39] -rw-r--r-- 1 boincer umatlas      2522 Jun  4 09:56 pandaJob.out
[2025-06-04 11:32:39] -rw------- 1 boincer umatlas    986819 Jun  4 09:56 agis_schedconf.cvmfs.json
[2025-06-04 11:32:39] -rw------- 1 boincer umatlas   1598969 Jun  4 09:56 agis_ddmendpoints.agis.ALL.json
[2025-06-04 11:32:39] drwx------ 4 boincer umatlas      4096 Jun  4 09:56 pilot3
[2025-06-04 11:32:39] -rw------- 1 boincer umatlas        95 Jun  4 11:31 pilot_heartbeat.json
[2025-06-04 11:32:39] -rw-r--r-- 1 boincer umatlas      6301 Jun  4 11:31 init_data.xml
[2025-06-04 11:32:39] -rw------- 1 boincer umatlas 176018190 Jun  4 11:31 HITS.45006595._055821.pool.root.1
[2025-06-04 11:32:39] -rw-r--r-- 1 boincer umatlas       529 Jun  4 11:32 boinc_task_state.xml
[2025-06-04 11:32:39] -rw------- 1 boincer umatlas      1071 Jun  4 11:32 memory_monitor_summary.json
[2025-06-04 11:32:39] -rw------- 1 boincer umatlas    318429 Jun  4 11:32 log.45006595._055821.job.log.tgz.1
[2025-06-04 11:32:39] -rw------- 1 boincer umatlas      7728 Jun  4 11:32 heartbeat.json
[2025-06-04 11:32:39] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 11:32 boinc_mmap_file
[2025-06-04 11:32:39] -rw-r--r-- 1 boincer umatlas        27 Jun  4 11:32 wrapper_checkpoint.txt
[2025-06-04 11:32:39] -rw------- 1 boincer umatlas      4735 Jun  4 11:32 pilotlog.txt
[2025-06-04 11:32:39] -rw------- 1 boincer umatlas    548177 Jun  4 11:32 log.45006595._055821.job.log.1
[2025-06-04 11:32:39] -rw------- 1 boincer umatlas       357 Jun  4 11:32 output.list
[2025-06-04 11:32:39] -rw-r--r-- 1 boincer umatlas       620 Jun  4 11:32 runtime_log
[2025-06-04 11:32:39] -rw------- 1 boincer umatlas    880640 Jun  4 11:32 result.tar.gz
[2025-06-04 11:32:39] -rw-r--r-- 1 boincer umatlas      8654 Jun  4 11:32 runtime_log.err
[2025-06-04 11:32:39] -rw------- 1 boincer umatlas       656 Jun  4 11:32 igqLDmwwyg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm7onKDmuKAvbn.diag
[2025-06-04 11:32:39] -rw-r--r-- 1 boincer umatlas     21540 Jun  4 11:32 stderr.txt
[2025-06-04 11:32:39] HITS file was successfully produced:
[2025-06-04 11:32:39] -rw------- 1 boincer umatlas 176018190 Jun  4 11:31 shared/HITS.pool.root.1
[2025-06-04 11:32:39]  *** Contents of shared directory: ***
[2025-06-04 11:32:39] total 385520
[2025-06-04 11:32:39] -rw-r--r-- 2 boincer umatlas 217335529 Jun  4 09:56 ATLAS.root_0
[2025-06-04 11:32:39] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 09:56 start_atlas.sh
[2025-06-04 11:32:39] -rw-r--r-- 2 boincer umatlas    508874 Jun  4 09:56 input.tar.gz
[2025-06-04 11:32:39] -rw------- 1 boincer umatlas 176018190 Jun  4 11:31 HITS.pool.root.1
[2025-06-04 11:32:39] -rw------- 1 boincer umatlas    880640 Jun  4 11:32 result.tar.gz
11:32:40 (66211): run_atlas exited; CPU time 29896.452984
11:32:40 (66211): called boinc_finish(0)

</stderr_txt>
]]>

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