Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:12:28 (419634): wrapper (7.7.26015): starting
07:12:28 (419634): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 07:12:28] Arguments: --nthreads 12
[2025-06-05 07:12:28] Threads: 12
[2025-06-05 07:12:28] Checking for CVMFS
[2025-06-05 07:12:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 07:12:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 07:12:28] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 07:12:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 07:12:29] 2.12.7.0 8354 9421 93624 146806 3 187 38119441 46080000 922 130560 0 12707453 99.996 1278028 37810 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-06-05 07:12:29] CVMFS is ok
[2025-06-05 07:12:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 07:12:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 07:12:29] Further information can be found at the LHC@home message board.
[2025-06-05 07:12:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 07:12:29] Checking for apptainer binary...
[2025-06-05 07:12:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 07:12:29] Running /usr/bin/apptainer --version
[2025-06-05 07:12:29] apptainer version 1.4.1-1.el9
[2025-06-05 07:12:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 07:12:29] minis01.farm.particle.cz
[2025-06-05 07:12:29] apptainer works
[2025-06-05 07:12:29] Set ATHENA_PROC_NUMBER=12
[2025-06-05 07:12:29] Set ATHENA_CORE_NUMBER=12
[2025-06-05 07:12:29] Starting ATLAS job with PandaID=6678390334
[2025-06-05 07:12:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 08:01:47]  *** The last 200 lines of the pilot log: ***
[2025-06-05 08:01:47]  guid=647c9824-7054-4657-b760-81864a33f673
[2025-06-05 08:01:47]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-05 08:01:47]  is_altstaged=None
[2025-06-05 08:01:47]  is_tar=False
[2025-06-05 08:01:47]  lfn=log.45006595._054785.job.log.tgz.1
[2025-06-05 08:01:47]  mtime=0
[2025-06-05 08:01:47]  protocol_id=None
[2025-06-05 08:01:47]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-05 08:01:47]  replicas=None
[2025-06-05 08:01:47]  scope=mc23_13p6TeV
[2025-06-05 08:01:47]  status=None
[2025-06-05 08:01:47]  status_code=0
[2025-06-05 08:01:47]  storage_token=
[2025-06-05 08:01:47]  surl=/scratch/.boinc/slots/2/PanDA_Pilot-6678390334/log.45006595._054785.job.log.tgz.1
[2025-06-05 08:01:47]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/20/51/log.45006595._054785.job.log.tgz.1
[2025-06-05 08:01:47]  workdir=None
[2025-06-05 08:01:47] ]
[2025-06-05 08:01:47] 2025-06-05 06:01:19,806 | INFO     | transferring file log.45006595._054785.job.log.tgz.1 from /scratch/.boinc/slots/2/PanDA_Pilot-6678390334/log.45006595._054785.job.log.tgz.1 to /scratch/.boinc/slot
[2025-06-05 08:01:47] 2025-06-05 06:01:19,806 | INFO     | executing command: /usr/bin/env mv /scratch/.boinc/slots/2/PanDA_Pilot-6678390334/log.45006595._054785.job.log.tgz.1 /scratch/.boinc/slots/2/log.45006595._054785.j
[2025-06-05 08:01:47] 2025-06-05 06:01:19,822 | INFO     | adding to output.list: log.45006595._054785.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/20/51/log.45006595._054785.job.log.tg
[2025-06-05 08:01:47] 2025-06-05 06:01:19,823 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 08:01:47] 2025-06-05 06:01:19,823 | INFO     | summary of transferred files:
[2025-06-05 08:01:47] 2025-06-05 06:01:19,823 | INFO     |  -- lfn=log.45006595._054785.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 08:01:47] 2025-06-05 06:01:19,823 | INFO     | stage-out finished correctly
[2025-06-05 08:01:47] 2025-06-05 06:01:20,050 | INFO     | monitor loop #223: job 0:6678390334 is in state 'finished'
[2025-06-05 08:01:47] 2025-06-05 06:01:20,051 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 08:01:47] 2025-06-05 06:01:21,990 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 08:01:47] 2025-06-05 06:01:22,560 | INFO     | monitor loop #224: job 0:6678390334 is in state 'finished'
[2025-06-05 08:01:47] 2025-06-05 06:01:22,560 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 08:01:47] 2025-06-05 06:01:24,047 | INFO     | job 6678390334 has state=finished
[2025-06-05 08:01:47] 2025-06-05 06:01:24,047 | INFO     | preparing for final server update for job 6678390334 in state='finished'
[2025-06-05 08:01:47] 2025-06-05 06:01:24,047 | INFO     | this job has now completed (state=finished)
[2025-06-05 08:01:47] 2025-06-05 06:01:24,048 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 08:01:47] 2025-06-05 06:01:24,048 | INFO     | log transfer has been attempted: DONE
[2025-06-05 08:01:47] 2025-06-05 06:01:24,048 | INFO     | job 6678390334 has finished - writing final server update
[2025-06-05 08:01:47] 2025-06-05 06:01:24,048 | INFO     | total number of processed events: 400 (read)
[2025-06-05 08:01:47] 2025-06-05 06:01:24,051 | INFO     | executing command: lscpu
[2025-06-05 08:01:47] 2025-06-05 06:01:24,091 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 08:01:47] 2025-06-05 06:01:25,063 | INFO     | monitor loop #225: job 0:6678390334 is in state 'finished'
[2025-06-05 08:01:47] 2025-06-05 06:01:25,063 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 08:01:47] 2025-06-05 06:01:27,522 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 08:01:47] 2025-06-05 06:01:27,522 | INFO     | using path: /scratch/.boinc/slots/2/PanDA_Pilot-6678390334/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 08:01:47] 2025-06-05 06:01:27,523 | INFO     | extracted standard info from prmon json
[2025-06-05 08:01:47] 2025-06-05 06:01:27,523 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 08:01:47] 2025-06-05 06:01:27,523 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 08:01:47] 2025-06-05 06:01:27,524 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 08:01:47] 2025-06-05 06:01:27,524 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 08:01:47] 2025-06-05 06:01:27,525 | INFO     | fitting pss+swap vs Time
[2025-06-05 08:01:47] 2025-06-05 06:01:27,526 | INFO     | sum of square deviations: 21358540.0
[2025-06-05 08:01:47] 2025-06-05 06:01:27,526 | INFO     | sum of deviations: -180209127.99999994
[2025-06-05 08:01:47] 2025-06-05 06:01:27,526 | INFO     | mean x: 1749101907.0
[2025-06-05 08:01:47] 2025-06-05 06:01:27,526 | INFO     | mean y: 2762169.0975609757
[2025-06-05 08:01:47] 2025-06-05 06:01:27,526 | INFO     | -- intersect: 14760518525.272047
[2025-06-05 08:01:47] 2025-06-05 06:01:27,526 | INFO     | intersect: 14760518525.272047
[2025-06-05 08:01:47] 2025-06-05 06:01:27,527 | INFO     | chi2: 0.001859973481220693
[2025-06-05 08:01:47] 2025-06-05 06:01:27,527 | INFO     | -- intersect: 14760518525.272047
[2025-06-05 08:01:47] 2025-06-05 06:01:27,527 | INFO     | current memory leak: -8.44 B/s (using 41 data points, chi2=0.00)
[2025-06-05 08:01:47] 2025-06-05 06:01:27,527 | INFO     | ..............................
[2025-06-05 08:01:47] 2025-06-05 06:01:27,527 | INFO     | . Timing measurements:
[2025-06-05 08:01:47] 2025-06-05 06:01:27,527 | INFO     | . get job = 0 s
[2025-06-05 08:01:47] 2025-06-05 06:01:27,527 | INFO     | . initial setup = 1 s
[2025-06-05 08:01:47] 2025-06-05 06:01:27,528 | INFO     | . payload setup = 5 s
[2025-06-05 08:01:47] 2025-06-05 06:01:27,528 | INFO     | . stage-in = 0 s
[2025-06-05 08:01:47] 2025-06-05 06:01:27,528 | INFO     | . payload execution = 2896 s
[2025-06-05 08:01:47] 2025-06-05 06:01:27,528 | INFO     | . stage-out = 0 s
[2025-06-05 08:01:47] 2025-06-05 06:01:27,528 | INFO     | . log creation = 0 s
[2025-06-05 08:01:47] 2025-06-05 06:01:27,528 | INFO     | ..............................
[2025-06-05 08:01:47] 2025-06-05 06:01:27,682 | INFO     | 
[2025-06-05 08:01:47] 2025-06-05 06:01:27,682 | INFO     | job summary report
[2025-06-05 08:01:47] 2025-06-05 06:01:27,683 | INFO     | --------------------------------------------------
[2025-06-05 08:01:47] 2025-06-05 06:01:27,683 | INFO     | PanDA job id: 6678390334
[2025-06-05 08:01:47] 2025-06-05 06:01:27,683 | INFO     | task id: 45006595
[2025-06-05 08:01:47] 2025-06-05 06:01:27,683 | INFO     | errors: (none)
[2025-06-05 08:01:47] 2025-06-05 06:01:27,683 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 08:01:47] 2025-06-05 06:01:27,683 | INFO     | pilot state: finished 
[2025-06-05 08:01:47] 2025-06-05 06:01:27,683 | INFO     | transexitcode: 0
[2025-06-05 08:01:47] 2025-06-05 06:01:27,683 | INFO     | exeerrorcode: 0
[2025-06-05 08:01:47] 2025-06-05 06:01:27,683 | INFO     | exeerrordiag: 
[2025-06-05 08:01:47] 2025-06-05 06:01:27,683 | INFO     | exitcode: 0
[2025-06-05 08:01:47] 2025-06-05 06:01:27,683 | INFO     | exitmsg: OK
[2025-06-05 08:01:47] 2025-06-05 06:01:27,683 | INFO     | cpuconsumptiontime: 30635 s
[2025-06-05 08:01:47] 2025-06-05 06:01:27,683 | INFO     | nevents: 400
[2025-06-05 08:01:47] 2025-06-05 06:01:27,683 | INFO     | neventsw: 0
[2025-06-05 08:01:47] 2025-06-05 06:01:27,683 | INFO     | pid: 430217
[2025-06-05 08:01:47] 2025-06-05 06:01:27,683 | INFO     | pgrp: 430217
[2025-06-05 08:01:47] 2025-06-05 06:01:27,683 | INFO     | corecount: 12
[2025-06-05 08:01:47] 2025-06-05 06:01:27,684 | INFO     | event service: False
[2025-06-05 08:01:47] 2025-06-05 06:01:27,684 | INFO     | sizes: {0: 2397172, 1: 2397371, 4: 2397577, 11: 2397605, 2906: 2422919, 2908: 2431862, 2910: 2432046, 2916: 2432216}
[2025-06-05 08:01:47] 2025-06-05 06:01:27,684 | INFO     | --------------------------------------------------
[2025-06-05 08:01:47] 2025-06-05 06:01:27,684 | INFO     | 
[2025-06-05 08:01:47] 2025-06-05 06:01:27,684 | INFO     | executing command: ls -lF /scratch/.boinc/slots/2
[2025-06-05 08:01:47] 2025-06-05 06:01:27,701 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 08:01:47] 2025-06-05 06:01:27,702 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 08:01:47] 2025-06-05 06:01:27,702 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 08:01:47] 2025-06-05 06:01:27,702 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 08:01:47] 2025-06-05 06:01:27,702 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 08:01:47] 2025-06-05 06:01:27,702 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 08:01:47] 2025-06-05 06:01:27,702 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 08:01:47] 2025-06-05 06:01:27,702 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 08:01:47] 2025-06-05 06:01:27,702 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 08:01:47] 2025-06-05 06:01:27,703 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 08:01:47] 2025-06-05 06:01:27,703 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 08:01:47] 2025-06-05 06:01:27,703 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 08:01:47] 2025-06-05 06:01:27,703 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 08:01:47] 2025-06-05 06:01:27,703 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 08:01:47] 2025-06-05 06:01:27,703 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 08:01:47] 2025-06-05 06:01:27,703 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 08:01:47] 2025-06-05 06:01:27,703 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 08:01:47] 2025-06-05 06:01:27,703 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 08:01:47] 2025-06-05 06:01:27,704 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 08:01:47] 2025-06-05 06:01:27,704 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 08:01:47] 2025-06-05 06:01:27,704 | INFO     | job 6678390334 has completed (purged errors)
[2025-06-05 08:01:47] 2025-06-05 06:01:27,704 | INFO     | overall cleanup function is called
[2025-06-05 08:01:47] 2025-06-05 06:01:28,712 | INFO     | --- collectZombieJob: --- 10, [430217]
[2025-06-05 08:01:47] 2025-06-05 06:01:28,713 | INFO     | zombie collector waiting for pid 430217
[2025-06-05 08:01:47] 2025-06-05 06:01:28,713 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 08:01:47] 2025-06-05 06:01:28,713 | INFO     | collected zombie processes
[2025-06-05 08:01:47] 2025-06-05 06:01:28,713 | INFO     | will attempt to kill all subprocesses of pid=430217
[2025-06-05 08:01:47] 2025-06-05 06:01:28,839 | INFO     | process IDs to be killed: [430217] (in reverse order)
[2025-06-05 08:01:47] 2025-06-05 06:01:28,885 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 08:01:47] 2025-06-05 06:01:28,885 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 08:01:47] 2025-06-05 06:01:28,889 | INFO     | did not find any defunct processes belonging to 430217
[2025-06-05 08:01:47] 2025-06-05 06:01:28,893 | INFO     | did not find any defunct processes belonging to 430217
[2025-06-05 08:01:47] 2025-06-05 06:01:28,893 | INFO     | ready for new job
[2025-06-05 08:01:47] 2025-06-05 06:01:28,893 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 08:01:47] 2025-06-05 06:01:28,895 | INFO     | **************************************
[2025-06-05 08:01:47] 2025-06-05 06:01:28,895 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 08:01:47] 2025-06-05 06:01:28,895 | INFO     | **************************************
[2025-06-05 08:01:47] 2025-06-05 06:01:28,895 | INFO     | 
[2025-06-05 08:01:47] 2025-06-05 06:01:28,896 | INFO     | architecture information:
[2025-06-05 08:01:47] 2025-06-05 06:01:28,897 | INFO     | executing command: cat /etc/os-release
[2025-06-05 08:01:47] 2025-06-05 06:01:28,910 | INFO     | cat /etc/os-release:
[2025-06-05 08:01:47] NAME="CentOS Linux"
[2025-06-05 08:01:47] VERSION="7 (Core)"
[2025-06-05 08:01:47] ID="centos"
[2025-06-05 08:01:47] ID_LIKE="rhel fedora"
[2025-06-05 08:01:47] VERSION_ID="7"
[2025-06-05 08:01:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 08:01:47] ANSI_COLOR="0;31"
[2025-06-05 08:01:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 08:01:47] HOME_URL="https://www.centos.org/"
[2025-06-05 08:01:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 08:01:47] 
[2025-06-05 08:01:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 08:01:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 08:01:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 08:01:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 08:01:47] 
[2025-06-05 08:01:47] 2025-06-05 06:01:28,910 | INFO     | **************************************
[2025-06-05 08:01:47] 2025-06-05 06:01:29,413 | INFO     | executing command: df -mP /scratch/.boinc/slots/2
[2025-06-05 08:01:47] 2025-06-05 06:01:29,426 | INFO     | sufficient remaining disk space (715334352896 B)
[2025-06-05 08:01:47] 2025-06-05 06:01:29,427 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 08:01:47] 2025-06-05 06:01:29,427 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 08:01:47] 2025-06-05 06:01:29,427 | INFO     | update_server=False
[2025-06-05 08:01:47] 2025-06-05 06:01:29,427 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 08:01:47] 2025-06-05 06:01:29,427 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 08:01:47] 2025-06-05 06:01:29,427 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 08:01:47] 2025-06-05 06:01:29,428 | INFO     | aborting loop
[2025-06-05 08:01:47] 2025-06-05 06:01:29,492 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 08:01:47] 2025-06-05 06:01:29,492 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 08:01:47] 2025-06-05 06:01:29,492 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 08:01:47] 2025-06-05 06:01:30,098 | INFO     | all payload control threads have been joined
[2025-06-05 08:01:47] 2025-06-05 06:01:30,109 | INFO     | all data control threads have been joined
[2025-06-05 08:01:47] 2025-06-05 06:01:30,368 | INFO     | all job control threads have been joined
[2025-06-05 08:01:47] 2025-06-05 06:01:30,407 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 08:01:47] 2025-06-05 06:01:30,429 | INFO     | [job] job monitor thread has finished
[2025-06-05 08:01:47] 2025-06-05 06:01:30,432 | INFO     | [job] retrieve thread has finished
[2025-06-05 08:01:47] 2025-06-05 06:01:30,433 | INFO     | [job] queue monitor thread has finished
[2025-06-05 08:01:47] 2025-06-05 06:01:30,486 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 08:01:47] 2025-06-05 06:01:30,672 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 08:01:47] 2025-06-05 06:01:30,724 | INFO     | [payload] validate_post thread has finished
[2025-06-05 08:01:47] 2025-06-05 06:01:30,916 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 08:01:47] 2025-06-05 06:01:31,103 | INFO     | [payload] control thread has finished
[2025-06-05 08:01:47] 2025-06-05 06:01:31,115 | INFO     | [data] control thread has finished
[2025-06-05 08:01:47] 2025-06-05 06:01:31,264 | INFO     | [data] copytool_in thread has finished
[2025-06-05 08:01:47] 2025-06-05 06:01:31,373 | INFO     | [job] control thread has finished
[2025-06-05 08:01:47] 2025-06-05 06:01:31,737 | INFO     | [payload] failed_post thread has finished
[2025-06-05 08:01:47] 2025-06-05 06:01:31,780 | INFO     | [job] validate thread has finished
[2025-06-05 08:01:47] 2025-06-05 06:01:32,413 | INFO     | [data] copytool_out thread has finished
[2025-06-05 08:01:47] 2025-06-05 06:01:32,583 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 08:01:47] 2025-06-05 06:01:36,589 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 08:01:47] 2025-06-05 06:01:40,446 | INFO     | job.realtimelogging is not enabled
[2025-06-05 08:01:47] 2025-06-05 06:01:41,452 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 08:01:47] 2025-06-05 06:01:42,220 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139787046881088)>', '<ExcThread(monitor, started 139786278921984)>']
[2025-06-05 08:01:47] 2025-06-05 06:01:42,554 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 08:01:47] 2025-06-05 06:01:42,555 | INFO     | [monitor] control thread has ended
[2025-06-05 08:01:47] 2025-06-05 06:01:47,246 | INFO     | all workflow threads have been joined
[2025-06-05 08:01:47] 2025-06-05 06:01:47,246 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 08:01:47] 2025-06-05 06:01:47,247 | INFO     | traces error code: 0
[2025-06-05 08:01:47] 2025-06-05 06:01:47,247 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 08:01:47] 2025-06-05 06:01:47,345 [wrapper] ==== pilot stdout END ====
[2025-06-05 08:01:47] 2025-06-05 06:01:47,347 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 08:01:47] 2025-06-05 06:01:47,350 [wrapper] pilotpid: 423447
[2025-06-05 08:01:47] 2025-06-05 06:01:47,352 [wrapper] Pilot exit status: 0
[2025-06-05 08:01:47] 2025-06-05 06:01:47,362 [wrapper] pandaids: 6678390334
[2025-06-05 08:01:47] 2025-06-05 06:01:47,395 [wrapper] cleanup supervisor_pilot  481226 423448
[2025-06-05 08:01:47] 2025-06-05 06:01:47,398 [wrapper] Test setup, not cleaning
[2025-06-05 08:01:47] 2025-06-05 06:01:47,400 [wrapper] apfmon messages muted
[2025-06-05 08:01:47] 2025-06-05 06:01:47,403 [wrapper] ==== wrapper stdout END ====
[2025-06-05 08:01:47] 2025-06-05 06:01:47,405 [wrapper] ==== wrapper stderr END ====
[2025-06-05 08:01:47]  *** Error codes and diagnostics ***
[2025-06-05 08:01:47]     "exeErrorCode": 0,
[2025-06-05 08:01:47]     "exeErrorDiag": "",
[2025-06-05 08:01:47]     "pilotErrorCode": 0,
[2025-06-05 08:01:47]     "pilotErrorDiag": "",
[2025-06-05 08:01:47]  *** Listing of results directory ***
[2025-06-05 08:01:47] total 400604
[2025-06-05 08:01:47] -rw-r--r-- 1 boinc boinc    495897 Jun  4 09:04 pilot3.tar.gz
[2025-06-05 08:01:47] -rwx------ 1 boinc boinc     37140 Jun  4 09:27 runpilot2-wrapper.sh
[2025-06-05 08:01:47] -rw-r--r-- 1 boinc boinc      5111 Jun  4 09:27 queuedata.json
[2025-06-05 08:01:47] -rw-r--r-- 1 boinc boinc       100 Jun  5 07:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 08:01:47] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 07:12 run_atlas
[2025-06-05 08:01:47] -rw-r--r-- 1 boinc boinc       105 Jun  5 07:12 job.xml
[2025-06-05 08:01:47] -rw-r--r-- 1 boinc boinc      6523 Jun  5 07:12 init_data.xml
[2025-06-05 08:01:47] -rw-r--r-- 2 boinc boinc 218450694 Jun  5 07:12 EVNT.45006593._002192.pool.root.1
[2025-06-05 08:01:47] -rw-r--r-- 2 boinc boinc     15093 Jun  5 07:12 start_atlas.sh
[2025-06-05 08:01:47] drwxrwx--x 2 boinc boinc      4096 Jun  5 07:12 shared
[2025-06-05 08:01:47] -rw-r--r-- 2 boinc boinc    508877 Jun  5 07:12 input.tar.gz
[2025-06-05 08:01:47] -rw-r--r-- 1 boinc boinc         0 Jun  5 07:12 boinc_lockfile
[2025-06-05 08:01:47] -rw-r--r-- 1 boinc boinc      2525 Jun  5 07:12 pandaJob.out
[2025-06-05 08:01:47] -rw------- 1 boinc boinc    987109 Jun  5 07:12 agis_schedconf.cvmfs.json
[2025-06-05 08:01:47] -rw------- 1 boinc boinc   1598969 Jun  5 07:12 agis_ddmendpoints.agis.ALL.json
[2025-06-05 08:01:47] drwx------ 4 boinc boinc      4096 Jun  5 07:12 pilot3
[2025-06-05 08:01:47] -rw-r--r-- 1 boinc boinc       529 Jun  5 08:00 boinc_task_state.xml
[2025-06-05 08:01:47] -rw------- 1 boinc boinc 186623771 Jun  5 08:00 HITS.45006595._054785.pool.root.1
[2025-06-05 08:01:47] -rw------- 1 boinc boinc        95 Jun  5 08:01 pilot_heartbeat.json
[2025-06-05 08:01:47] -rw------- 1 boinc boinc      1012 Jun  5 08:01 memory_monitor_summary.json
[2025-06-05 08:01:47] -rw------- 1 boinc boinc    346491 Jun  5 08:01 log.45006595._054785.job.log.tgz.1
[2025-06-05 08:01:47] -rw------- 1 boinc boinc      7685 Jun  5 08:01 heartbeat.json
[2025-06-05 08:01:47] -rw-r--r-- 1 boinc boinc        27 Jun  5 08:01 wrapper_checkpoint.txt
[2025-06-05 08:01:47] -rw-r--r-- 1 boinc boinc      8192 Jun  5 08:01 boinc_mmap_file
[2025-06-05 08:01:47] -rw------- 1 boinc boinc      4427 Jun  5 08:01 pilotlog.txt
[2025-06-05 08:01:47] -rw------- 1 boinc boinc    310570 Jun  5 08:01 log.45006595._054785.job.log.1
[2025-06-05 08:01:47] -rw------- 1 boinc boinc       357 Jun  5 08:01 output.list
[2025-06-05 08:01:47] -rw-r--r-- 1 boinc boinc       620 Jun  5 08:01 runtime_log
[2025-06-05 08:01:47] -rw------- 1 boinc boinc    675840 Jun  5 08:01 result.tar.gz
[2025-06-05 08:01:47] -rw------- 1 boinc boinc       662 Jun  5 08:01 VT5LDmKixg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmFuaKDmPsOc3m.diag
[2025-06-05 08:01:47] -rw-r--r-- 1 boinc boinc      8720 Jun  5 08:01 runtime_log.err
[2025-06-05 08:01:47] -rw-r--r-- 1 boinc boinc     21303 Jun  5 08:01 stderr.txt
[2025-06-05 08:01:47] HITS file was successfully produced:
[2025-06-05 08:01:47] -rw------- 1 boinc boinc 186623771 Jun  5 08:00 shared/HITS.pool.root.1
[2025-06-05 08:01:47]  *** Contents of shared directory: ***
[2025-06-05 08:01:47] total 396768
[2025-06-05 08:01:47] -rw-r--r-- 2 boinc boinc 218450694 Jun  5 07:12 ATLAS.root_0
[2025-06-05 08:01:47] -rw-r--r-- 2 boinc boinc     15093 Jun  5 07:12 start_atlas.sh
[2025-06-05 08:01:47] -rw-r--r-- 2 boinc boinc    508877 Jun  5 07:12 input.tar.gz
[2025-06-05 08:01:47] -rw------- 1 boinc boinc 186623771 Jun  5 08:00 HITS.pool.root.1
[2025-06-05 08:01:47] -rw------- 1 boinc boinc    675840 Jun  5 08:01 result.tar.gz
08:01:49 (419634): run_atlas exited; CPU time 30658.560436
08:01:49 (419634): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN