Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:35:15 (8326): wrapper (7.7.26015): starting
23:35:15 (8326): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 23:35:15] Arguments: --nthreads 8
[2025-06-04 23:35:15] Threads: 8
[2025-06-04 23:35:15] Checking for CVMFS
[2025-06-04 23:35:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 23:35:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 23:35:16] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 23:35:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 23:35:16] 2.11.2.0 17769 33737 92012 146795 2 201 13334863 25165824 3802 130560 0 17039051 99.846 18487635 2182 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 23:35:16] CVMFS is ok
[2025-06-04 23:35:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 23:35:16] Checking for apptainer binary...
[2025-06-04 23:35:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 23:35:16] Running /usr/bin/apptainer --version
[2025-06-04 23:35:16] apptainer version 1.3.2-1.el7
[2025-06-04 23:35:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 23:35:18] cg-vwn290.simple-grid.lan
[2025-06-04 23:35:18] apptainer works
[2025-06-04 23:35:18] Set ATHENA_PROC_NUMBER=8
[2025-06-04 23:35:18] Set ATHENA_CORE_NUMBER=8
[2025-06-04 23:35:18] Starting ATLAS job with PandaID=6667928488
[2025-06-04 23:35:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 05:11:11]  *** The last 200 lines of the pilot log: ***
[2025-06-05 05:11:11] 2025-06-05 03:03:24,893 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6667928488/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 05:11:11] 2025-06-05 03:03:24,894 | INFO     | extracted standard info from prmon json
[2025-06-05 05:11:11] 2025-06-05 03:03:24,894 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 05:11:11] 2025-06-05 03:03:24,894 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 05:11:11] 2025-06-05 03:03:24,894 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 05:11:11] 2025-06-05 03:03:24,894 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 05:11:11] 2025-06-05 03:03:24,901 | INFO     | fitting pss+swap vs Time
[2025-06-05 05:11:11] 2025-06-05 03:03:24,902 | INFO     | sum of square deviations: 10160711440.0
[2025-06-05 05:11:11] 2025-06-05 03:03:24,905 | INFO     | sum of deviations: -7904110563.0
[2025-06-05 05:11:11] 2025-06-05 03:03:24,906 | INFO     | mean x: 1749082767.5
[2025-06-05 05:11:11] 2025-06-05 03:03:24,906 | INFO     | mean y: 2493691.36875
[2025-06-05 05:11:11] 2025-06-05 03:03:24,906 | INFO     | -- intersect: 1363121208.4275382
[2025-06-05 05:11:11] 2025-06-05 03:03:24,906 | INFO     | intersect: 1363121208.4275382
[2025-06-05 05:11:11] 2025-06-05 03:03:24,907 | INFO     | chi2: 2.7065289387115605
[2025-06-05 05:11:11] 2025-06-05 03:03:24,907 | INFO     | sum of square deviations: 9691828230.0
[2025-06-05 05:11:11] 2025-06-05 03:03:24,910 | INFO     | sum of deviations: 13371634319.999983
[2025-06-05 05:11:11] 2025-06-05 03:03:24,910 | INFO     | mean x: 1749082615.0
[2025-06-05 05:11:11] 2025-06-05 03:03:24,911 | INFO     | mean y: 2500523.93015873
[2025-06-05 05:11:11] 2025-06-05 03:03:24,911 | INFO     | -- intersect: -2410676078.896336
[2025-06-05 05:11:11] 2025-06-05 03:03:24,911 | INFO     | intersect: -2410676078.896336
[2025-06-05 05:11:11] 2025-06-05 03:03:24,911 | INFO     | chi2: 1.9404770752967824
[2025-06-05 05:11:11] 2025-06-05 03:03:24,911 | INFO     | current chi2=1.9404770752967824 (change=28.303848980068768 %)
[2025-06-05 05:11:11] 2025-06-05 03:03:24,912 | INFO     | sum of square deviations: 9237596457.5
[2025-06-05 05:11:11] 2025-06-05 03:03:24,915 | INFO     | sum of deviations: 13133894902.500002
[2025-06-05 05:11:11] 2025-06-05 03:03:24,916 | INFO     | mean x: 1749082462.5
[2025-06-05 05:11:11] 2025-06-05 03:03:24,916 | INFO     | mean y: 2500444.1
[2025-06-05 05:11:11] 2025-06-05 03:03:24,916 | INFO     | -- intersect: -2484322328.89846
[2025-06-05 05:11:11] 2025-06-05 03:03:24,916 | INFO     | intersect: -2484322328.89846
[2025-06-05 05:11:11] 2025-06-05 03:03:24,916 | INFO     | chi2: 1.9408203730376357
[2025-06-05 05:11:11] 2025-06-05 03:03:24,917 | INFO     | current chi2=1.9408203730376357 (change=-0.01769140925309735 %)
[2025-06-05 05:11:11] 2025-06-05 03:03:24,917 | INFO     | right removable region: 309
[2025-06-05 05:11:11] 2025-06-05 03:03:24,917 | INFO     | sum of square deviations: 9691828230.0
[2025-06-05 05:11:11] 2025-06-05 03:03:24,920 | INFO     | sum of deviations: -66628658856.00001
[2025-06-05 05:11:11] 2025-06-05 03:03:24,921 | INFO     | mean x: 1749082920.0
[2025-06-05 05:11:11] 2025-06-05 03:03:24,921 | INFO     | mean y: 2512683.4095238093
[2025-06-05 05:11:11] 2025-06-05 03:03:24,921 | INFO     | -- intersect: 12026977667.921156
[2025-06-05 05:11:11] 2025-06-05 03:03:24,921 | INFO     | intersect: 12026977667.921156
[2025-06-05 05:11:11] 2025-06-05 03:03:24,922 | INFO     | chi2: 0.9840129874630079
[2025-06-05 05:11:11] 2025-06-05 03:03:24,922 | INFO     | current chi2=0.9840129874630079 (change=63.642990348684535 %)
[2025-06-05 05:11:11] 2025-06-05 03:03:24,922 | INFO     | sum of square deviations: 9237596457.5
[2025-06-05 05:11:11] 2025-06-05 03:03:24,925 | INFO     | sum of deviations: -65985584503.5
[2025-06-05 05:11:11] 2025-06-05 03:03:24,926 | INFO     | mean x: 1749083072.5
[2025-06-05 05:11:11] 2025-06-05 03:03:24,926 | INFO     | mean y: 2512449.977419355
[2025-06-05 05:11:11] 2025-06-05 03:03:24,926 | INFO     | -- intersect: 12496484168.170994
[2025-06-05 05:11:11] 2025-06-05 03:03:24,926 | INFO     | intersect: 12496484168.170994
[2025-06-05 05:11:11] 2025-06-05 03:03:24,926 | INFO     | chi2: 0.9683519015783184
[2025-06-05 05:11:11] 2025-06-05 03:03:24,926 | INFO     | current chi2=0.9683519015783184 (change=1.591552762435288 %)
[2025-06-05 05:11:11] 2025-06-05 03:03:24,927 | INFO     | left removable region: 20
[2025-06-05 05:11:11] 2025-06-05 03:03:24,927 | INFO     | sum of square deviations: 7484568240.0
[2025-06-05 05:11:11] 2025-06-05 03:03:24,930 | INFO     | sum of deviations: -23955580535.0
[2025-06-05 05:11:11] 2025-06-05 03:03:24,930 | INFO     | mean x: 1749083042.0
[2025-06-05 05:11:11] 2025-06-05 03:03:24,930 | INFO     | mean y: 2512606.588235294
[2025-06-05 05:11:11] 2025-06-05 03:03:24,930 | INFO     | -- intersect: 5600737959.268537
[2025-06-05 05:11:11] 2025-06-05 03:03:24,930 | INFO     | intersect: 5600737959.268537
[2025-06-05 05:11:11] 2025-06-05 03:03:24,931 | INFO     | chi2: 0.13432299804726994
[2025-06-05 05:11:11] 2025-06-05 03:03:24,931 | INFO     | -- intersect: 5600737959.268537
[2025-06-05 05:11:11] 2025-06-05 03:03:24,931 | INFO     | current memory leak: -3.20 B/s (using 289 data points, chi2=0.13)
[2025-06-05 05:11:11] 2025-06-05 03:03:24,932 | INFO     | ..............................
[2025-06-05 05:11:11] 2025-06-05 03:03:24,933 | INFO     | . Timing measurements:
[2025-06-05 05:11:11] 2025-06-05 03:03:24,933 | INFO     | . get job = 0 s
[2025-06-05 05:11:11] 2025-06-05 03:03:24,933 | INFO     | . initial setup = 2 s
[2025-06-05 05:11:11] 2025-06-05 03:03:24,933 | INFO     | . payload setup = 20 s
[2025-06-05 05:11:11] 2025-06-05 03:03:24,933 | INFO     | . stage-in = 0 s
[2025-06-05 05:11:11] 2025-06-05 03:03:24,933 | INFO     | . payload execution = 19501 s
[2025-06-05 05:11:11] 2025-06-05 03:03:24,933 | INFO     | . stage-out = 2 s
[2025-06-05 05:11:11] 2025-06-05 03:03:24,933 | INFO     | . log creation = 0 s
[2025-06-05 05:11:11] 2025-06-05 03:03:24,933 | INFO     | ..............................
[2025-06-05 05:11:11] 2025-06-05 03:03:25,054 | INFO     | 
[2025-06-05 05:11:11] 2025-06-05 03:03:25,054 | INFO     | job summary report
[2025-06-05 05:11:11] 2025-06-05 03:03:25,054 | INFO     | --------------------------------------------------
[2025-06-05 05:11:11] 2025-06-05 03:03:25,055 | INFO     | PanDA job id: 6667928488
[2025-06-05 05:11:11] 2025-06-05 03:03:25,055 | INFO     | task id: 44871837
[2025-06-05 05:11:11] 2025-06-05 03:03:25,055 | INFO     | errors: (none)
[2025-06-05 05:11:11] 2025-06-05 03:03:25,055 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 05:11:11] 2025-06-05 03:03:25,055 | INFO     | pilot state: finished 
[2025-06-05 05:11:11] 2025-06-05 03:03:25,055 | INFO     | transexitcode: 0
[2025-06-05 05:11:11] 2025-06-05 03:03:25,055 | INFO     | exeerrorcode: 0
[2025-06-05 05:11:11] 2025-06-05 03:03:25,055 | INFO     | exeerrordiag: 
[2025-06-05 05:11:11] 2025-06-05 03:03:25,055 | INFO     | exitcode: 0
[2025-06-05 05:11:11] 2025-06-05 03:03:25,055 | INFO     | exitmsg: OK
[2025-06-05 05:11:11] 2025-06-05 03:03:25,055 | INFO     | cpuconsumptiontime: 73353 s
[2025-06-05 05:11:11] 2025-06-05 03:03:25,055 | INFO     | nevents: 400
[2025-06-05 05:11:11] 2025-06-05 03:03:25,055 | INFO     | neventsw: 0
[2025-06-05 05:11:11] 2025-06-05 03:03:25,056 | INFO     | pid: 26332
[2025-06-05 05:11:11] 2025-06-05 03:03:25,056 | INFO     | pgrp: 26332
[2025-06-05 05:11:11] 2025-06-05 03:03:25,056 | INFO     | corecount: 8
[2025-06-05 05:11:11] 2025-06-05 03:03:25,056 | INFO     | event service: False
[2025-06-05 05:11:11] 2025-06-05 03:03:25,056 | INFO     | sizes: {0: 2397222, 1: 2397421, 12: 2397421, 17: 2397655, 23: 2397683, 19526: 2429803, 19529: 2438774, 19533: 2438830, 19618: 2439000}
[2025-06-05 05:11:11] 2025-06-05 03:03:25,056 | INFO     | --------------------------------------------------
[2025-06-05 05:11:11] 2025-06-05 03:03:25,056 | INFO     | 
[2025-06-05 05:11:11] 2025-06-05 03:03:25,056 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-06-05 05:11:11] 2025-06-05 03:03:25,325 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 05:11:11] 2025-06-05 03:03:25,326 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 05:11:11] 2025-06-05 03:03:25,326 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 05:11:11] 2025-06-05 03:03:25,326 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 05:11:11] 2025-06-05 03:03:25,326 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 05:11:11] 2025-06-05 03:03:25,326 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 05:11:11] 2025-06-05 03:03:25,326 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 05:11:11] 2025-06-05 03:03:25,326 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 05:11:11] 2025-06-05 03:03:25,326 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 05:11:11] 2025-06-05 03:03:25,327 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 05:11:11] 2025-06-05 03:03:25,327 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 05:11:11] 2025-06-05 03:03:25,327 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 05:11:11] 2025-06-05 03:03:25,327 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 05:11:11] 2025-06-05 03:03:25,327 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 05:11:11] 2025-06-05 03:03:25,327 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 05:11:11] 2025-06-05 03:03:25,327 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 05:11:11] 2025-06-05 03:03:25,327 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 05:11:11] 2025-06-05 03:03:25,327 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 05:11:11] 2025-06-05 03:03:25,328 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 05:11:11] 2025-06-05 03:03:25,328 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 05:11:11] 2025-06-05 03:03:25,328 | INFO     | job 6667928488 has completed (purged errors)
[2025-06-05 05:11:11] 2025-06-05 03:03:25,328 | INFO     | overall cleanup function is called
[2025-06-05 05:11:11] 2025-06-05 03:03:26,346 | INFO     | --- collectZombieJob: --- 10, [26332]
[2025-06-05 05:11:11] 2025-06-05 03:03:26,346 | INFO     | zombie collector waiting for pid 26332
[2025-06-05 05:11:11] 2025-06-05 03:03:26,346 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 05:11:11] 2025-06-05 03:03:26,347 | INFO     | collected zombie processes
[2025-06-05 05:11:11] 2025-06-05 03:03:26,347 | INFO     | will attempt to kill all subprocesses of pid=26332
[2025-06-05 05:11:11] 2025-06-05 03:03:26,460 | INFO     | process IDs to be killed: [26332] (in reverse order)
[2025-06-05 05:11:11] 2025-06-05 03:03:26,526 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 05:11:11] 2025-06-05 03:03:26,527 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 05:11:11] 2025-06-05 03:03:26,530 | INFO     | did not find any defunct processes belonging to 26332
[2025-06-05 05:11:11] 2025-06-05 03:03:26,534 | INFO     | did not find any defunct processes belonging to 26332
[2025-06-05 05:11:11] 2025-06-05 03:03:26,534 | INFO     | ready for new job
[2025-06-05 05:11:11] 2025-06-05 03:03:26,534 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 05:11:11] 2025-06-05 03:03:26,537 | INFO     | **************************************
[2025-06-05 05:11:11] 2025-06-05 03:03:26,537 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 05:11:11] 2025-06-05 03:03:26,537 | INFO     | **************************************
[2025-06-05 05:11:11] 2025-06-05 03:03:26,537 | INFO     | 
[2025-06-05 05:11:11] 2025-06-05 03:03:26,538 | INFO     | pilot is running in a VM
[2025-06-05 05:11:11] 2025-06-05 03:03:26,538 | INFO     | architecture information:
[2025-06-05 05:11:11] 2025-06-05 03:03:26,539 | INFO     | executing command: cat /etc/os-release
[2025-06-05 05:11:11] 2025-06-05 03:03:26,653 | INFO     | cat /etc/os-release:
[2025-06-05 05:11:11] NAME="CentOS Linux"
[2025-06-05 05:11:11] VERSION="7 (Core)"
[2025-06-05 05:11:11] ID="centos"
[2025-06-05 05:11:11] ID_LIKE="rhel fedora"
[2025-06-05 05:11:11] VERSION_ID="7"
[2025-06-05 05:11:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 05:11:11] ANSI_COLOR="0;31"
[2025-06-05 05:11:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 05:11:11] HOME_URL="https://www.centos.org/"
[2025-06-05 05:11:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 05:11:11] 
[2025-06-05 05:11:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 05:11:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 05:11:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 05:11:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 05:11:11] 
[2025-06-05 05:11:11] 2025-06-05 03:03:26,654 | INFO     | **************************************
[2025-06-05 05:11:11] 2025-06-05 03:03:27,157 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-06-05 05:11:11] 2025-06-05 03:03:27,322 | INFO     | sufficient remaining disk space (496996712448 B)
[2025-06-05 05:11:11] 2025-06-05 03:03:27,322 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 05:11:11] 2025-06-05 03:03:27,322 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 05:11:11] 2025-06-05 03:03:27,322 | INFO     | update_server=False
[2025-06-05 05:11:11] 2025-06-05 03:03:27,322 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 05:11:11] 2025-06-05 03:03:27,323 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 05:11:11] 2025-06-05 03:03:27,329 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 05:11:11] 2025-06-05 03:03:27,619 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 05:11:11] 2025-06-05 03:03:27,619 | INFO     | aborting loop
[2025-06-05 05:11:11] 2025-06-05 03:03:27,775 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 05:11:11] 2025-06-05 03:03:27,775 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 05:11:11] 2025-06-05 03:03:27,776 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 05:11:11] 2025-06-05 03:03:27,875 | INFO     | all data control threads have been joined
[2025-06-05 05:11:11] 2025-06-05 03:03:27,968 | INFO     | all payload control threads have been joined
[2025-06-05 05:11:11] 2025-06-05 03:03:27,998 | INFO     | all job control threads have been joined
[2025-06-05 05:11:11] 2025-06-05 03:03:28,328 | INFO     | [job] retrieve thread has finished
[2025-06-05 05:11:11] 2025-06-05 03:03:28,625 | INFO     | [job] job monitor thread has finished
[2025-06-05 05:11:11] 2025-06-05 03:03:28,689 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 05:11:11] 2025-06-05 03:03:28,768 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 05:11:11] 2025-06-05 03:03:28,881 | INFO     | [data] control thread has finished
[2025-06-05 05:11:11] 2025-06-05 03:03:28,974 | INFO     | [payload] control thread has finished
[2025-06-05 05:11:11] 2025-06-05 03:03:29,004 | INFO     | [job] control thread has finished
[2025-06-05 05:11:11] 2025-06-05 03:03:29,063 | INFO     | [data] copytool_in thread has finished
[2025-06-05 05:11:11] 2025-06-05 03:03:29,068 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 05:11:11] 2025-06-05 03:03:29,099 | INFO     | [payload] validate_post thread has finished
[2025-06-05 05:11:11] 2025-06-05 03:03:29,283 | INFO     | [job] validate thread has finished
[2025-06-05 05:11:11] 2025-06-05 03:03:29,336 | INFO     | [data] copytool_out thread has finished
[2025-06-05 05:11:11] 2025-06-05 03:03:29,692 | INFO     | [payload] failed_post thread has finished
[2025-06-05 05:11:11] 2025-06-05 03:03:29,725 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 05:11:11] 2025-06-05 03:03:30,069 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 05:11:11] 2025-06-05 03:03:31,075 | INFO     | [job] queue monitor thread has finished
[2025-06-05 05:11:11] 2025-06-05 03:03:31,331 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 05:11:11] 2025-06-05 03:03:32,118 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139755534870336)>', '<ExcThread(monitor, started 139754871973632)>']
[2025-06-05 05:11:11] 2025-06-05 03:03:32,805 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 05:11:11] 2025-06-05 03:03:32,805 | INFO     | [monitor] control thread has ended
[2025-06-05 05:11:11] 2025-06-05 03:03:37,144 | INFO     | all workflow threads have been joined
[2025-06-05 05:11:11] 2025-06-05 03:03:37,144 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 05:11:11] 2025-06-05 03:03:37,145 | INFO     | traces error code: 0
[2025-06-05 05:11:11] 2025-06-05 03:03:37,145 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 05:11:11] 2025-06-05 03:03:37,586 [wrapper] ==== pilot stdout END ====
[2025-06-05 05:11:11] 2025-06-05 03:03:37,669 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 05:11:11] 2025-06-05 03:03:37,784 [wrapper] pilotpid: 12031
[2025-06-05 05:11:11] 2025-06-05 03:03:37,885 [wrapper] Pilot exit status: 0
[2025-06-05 05:11:11] 2025-06-05 03:03:38,162 [wrapper] pandaids: 6667928488
[2025-06-05 05:11:11] 2025-06-05 03:03:39,205 [wrapper] cleanup supervisor_pilot 27602 12032
[2025-06-05 05:11:11] 2025-06-05 03:03:39,330 [wrapper] Test setup, not cleaning
[2025-06-05 05:11:11] 2025-06-05 03:03:39,425 [wrapper] apfmon messages muted
[2025-06-05 05:11:11] 2025-06-05 03:03:39,484 [wrapper] ==== wrapper stdout END ====
[2025-06-05 05:11:11] 2025-06-05 03:03:39,576 [wrapper] ==== wrapper stderr END ====
[2025-06-05 05:11:11]  *** Error codes and diagnostics ***
[2025-06-05 05:11:11]     "exeErrorCode": 0,
[2025-06-05 05:11:11]     "exeErrorDiag": "",
[2025-06-05 05:11:11]     "pilotErrorCode": 0,
[2025-06-05 05:11:11]     "pilotErrorDiag": "",
[2025-06-05 05:11:11]  *** Listing of results directory ***
[2025-06-05 05:11:11] total 418052
[2025-06-05 05:11:11] -rw-r--r--. 1 boinc boinc      5111 May 28 06:30 queuedata.json
[2025-06-05 05:11:11] -rw-r--r--. 1 boinc boinc    495897 May 28 06:31 pilot3.tar.gz
[2025-06-05 05:11:11] -rwx------. 1 boinc boinc     37140 May 28 06:33 runpilot2-wrapper.sh
[2025-06-05 05:11:11] -rw-r--r--. 1 boinc boinc       100 Jun  4 23:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 05:11:11] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 23:35 run_atlas
[2025-06-05 05:11:11] -rw-r--r--. 1 boinc boinc       105 Jun  4 23:35 job.xml
[2025-06-05 05:11:11] -rw-r--r--. 1 boinc boinc      6392 Jun  4 23:35 init_data.xml
[2025-06-05 05:11:11] -rw-r--r--. 2 boinc boinc 225328103 Jun  4 23:35 EVNT.44871834._003075.pool.root.1
[2025-06-05 05:11:11] -rw-r--r--. 2 boinc boinc     15093 Jun  4 23:35 start_atlas.sh
[2025-06-05 05:11:11] drwxrwx--x. 2 boinc boinc        68 Jun  4 23:35 shared
[2025-06-05 05:11:11] -rw-r--r--. 2 boinc boinc    508884 Jun  4 23:35 input.tar.gz
[2025-06-05 05:11:11] -rw-r--r--. 1 boinc boinc         0 Jun  4 23:35 boinc_lockfile
[2025-06-05 05:11:11] -rw-r--r--. 1 boinc boinc      2559 Jun  4 23:35 pandaJob.out
[2025-06-05 05:11:11] -rw-------. 1 boinc boinc    987032 Jun  4 23:35 agis_schedconf.cvmfs.json
[2025-06-05 05:11:11] drwx------. 4 boinc boinc      4096 Jun  4 23:35 pilot3
[2025-06-05 05:11:11] -rw-------. 1 boinc boinc 194720849 Jun  5 05:01 HITS.44871837._078647.pool.root.1
[2025-06-05 05:11:11] -rw-r--r--. 1 boinc boinc       531 Jun  5 05:01 boinc_task_state.xml
[2025-06-05 05:11:11] -rw-------. 1 boinc boinc      1019 Jun  5 05:01 memory_monitor_summary.json
[2025-06-05 05:11:11] -rw-------. 1 boinc boinc   1598969 Jun  5 05:01 agis_ddmendpoints.agis.ALL.json
[2025-06-05 05:11:11] -rw-------. 1 boinc boinc    426439 Jun  5 05:01 log.44871837._078647.job.log.tgz.1
[2025-06-05 05:11:11] -rw-------. 1 boinc boinc        95 Jun  5 05:02 pilot_heartbeat.json
[2025-06-05 05:11:11] -rw-------. 1 boinc boinc      7688 Jun  5 05:03 heartbeat.json
[2025-06-05 05:11:11] -rw-------. 1 boinc boinc      4417 Jun  5 05:03 pilotlog.txt
[2025-06-05 05:11:11] -rw-------. 1 boinc boinc   1682171 Jun  5 05:03 log.44871837._078647.job.log.1
[2025-06-05 05:11:11] -rw-------. 1 boinc boinc       357 Jun  5 05:03 output.list
[2025-06-05 05:11:11] -rw-r--r--. 1 boinc boinc       620 Jun  5 05:03 runtime_log
[2025-06-05 05:11:11] -rw-------. 1 boinc boinc   2129920 Jun  5 05:03 result.tar.gz
[2025-06-05 05:11:11] -rw-r--r--. 1 boinc boinc      8673 Jun  5 05:03 runtime_log.err
[2025-06-05 05:11:11] -rw-------. 1 boinc boinc       657 Jun  5 05:03 6w2LDmNfNe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmIuSKDm7IUTFo.diag
[2025-06-05 05:11:11] -rw-r--r--. 1 boinc boinc      8192 Jun  5 05:11 boinc_mmap_file
[2025-06-05 05:11:11] -rw-r--r--. 1 boinc boinc        28 Jun  5 05:11 wrapper_checkpoint.txt
[2025-06-05 05:11:11] -rw-r--r--. 1 boinc boinc     20489 Jun  5 05:11 stderr.txt
[2025-06-05 05:11:11] HITS file was successfully produced:
[2025-06-05 05:11:11] -rw-------. 1 boinc boinc 194720849 Jun  5 05:01 shared/HITS.pool.root.1
[2025-06-05 05:11:11]  *** Contents of shared directory: ***
[2025-06-05 05:11:11] total 412804
[2025-06-05 05:11:11] -rw-r--r--. 2 boinc boinc 225328103 Jun  4 23:35 ATLAS.root_0
[2025-06-05 05:11:11] -rw-r--r--. 2 boinc boinc     15093 Jun  4 23:35 start_atlas.sh
[2025-06-05 05:11:11] -rw-r--r--. 2 boinc boinc    508884 Jun  4 23:35 input.tar.gz
[2025-06-05 05:11:11] -rw-------. 1 boinc boinc 194720849 Jun  5 05:01 HITS.pool.root.1
[2025-06-05 05:11:11] -rw-------. 1 boinc boinc   2129920 Jun  5 05:03 result.tar.gz
05:11:13 (8326): run_atlas exited; CPU time 73614.585636
05:11:13 (8326): called boinc_finish(0)

</stderr_txt>
]]>

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