Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:13:37 (668543): wrapper (7.7.26015): starting
10:13:37 (668543): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 10:13:37] Arguments: --nthreads 8
[2025-06-04 10:13:37] Threads: 8
[2025-06-04 10:13:37] Checking for CVMFS
[2025-06-04 10:13:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 10:13:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 10:13:37] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 10:13:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 10:13:38] 2.12.6.0 61263 31437 185660 146781 0 876 38072720 40960001 41978 16776704 1 492256799 99.789 275001139 31723 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 10:13:38] CVMFS is ok
[2025-06-04 10:13:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 10:13:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 10:13:38] Further information can be found at the LHC@home message board.
[2025-06-04 10:13:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 10:13:38] Checking for apptainer binary...
[2025-06-04 10:13:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 10:13:38] Running /usr/bin/apptainer --version
[2025-06-04 10:13:38] apptainer version 1.4.1-1.el9
[2025-06-04 10:13:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 10:13:38] c8-7-5.aglt2.org
[2025-06-04 10:13:38] apptainer works
[2025-06-04 10:13:38] Set ATHENA_PROC_NUMBER=8
[2025-06-04 10:13:38] Set ATHENA_CORE_NUMBER=8
[2025-06-04 10:13:38] Starting ATLAS job with PandaID=6679635323
[2025-06-04 10:13:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 11:07:29]  *** The last 200 lines of the pilot log: ***
[2025-06-04 11:07:29]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 11:07:29]  is_altstaged=None
[2025-06-04 11:07:29]  is_tar=False
[2025-06-04 11:07:29]  lfn=log.45006595._056558.job.log.tgz.1
[2025-06-04 11:07:29]  mtime=0
[2025-06-04 11:07:29]  protocol_id=None
[2025-06-04 11:07:29]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 11:07:29]  replicas=None
[2025-06-04 11:07:29]  scope=mc23_13p6TeV
[2025-06-04 11:07:29]  status=None
[2025-06-04 11:07:29]  status_code=0
[2025-06-04 11:07:29]  storage_token=
[2025-06-04 11:07:29]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6679635323/log.45006595._056558.job.log.tgz.1
[2025-06-04 11:07:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/59/02/log.45006595._056558.job.log.tgz.1
[2025-06-04 11:07:29]  workdir=None
[2025-06-04 11:07:29] ]
[2025-06-04 11:07:29] 2025-06-04 15:07:00,967 | INFO     | transferring file log.45006595._056558.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6679635323/log.45006595._056558.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 11:07:29] 2025-06-04 15:07:00,967 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6679635323/log.45006595._056558.job.log.tgz.1 /tmp/boinchome/slots/2/log.45006595._056558.job
[2025-06-04 11:07:29] 2025-06-04 15:07:00,996 | INFO     | adding to output.list: log.45006595._056558.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/59/02/log.45006595._056558.job.log.tg
[2025-06-04 11:07:29] 2025-06-04 15:07:00,997 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 11:07:29] 2025-06-04 15:07:00,997 | INFO     | summary of transferred files:
[2025-06-04 11:07:29] 2025-06-04 15:07:00,997 | INFO     |  -- lfn=log.45006595._056558.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 11:07:29] 2025-06-04 15:07:00,997 | INFO     | stage-out finished correctly
[2025-06-04 11:07:29] 2025-06-04 15:07:01,059 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 11:07:29] 2025-06-04 15:07:01,519 | INFO     | number of running child processes to parent process 764433: 1
[2025-06-04 11:07:29] 2025-06-04 15:07:01,519 | INFO     | maximum number of monitored processes: 6
[2025-06-04 11:07:29] 2025-06-04 15:07:02,708 | INFO     | job 6679635323 has state=finished
[2025-06-04 11:07:29] 2025-06-04 15:07:02,710 | INFO     | preparing for final server update for job 6679635323 in state='finished'
[2025-06-04 11:07:29] 2025-06-04 15:07:02,711 | INFO     | this job has now completed (state=finished)
[2025-06-04 11:07:29] 2025-06-04 15:07:02,711 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 11:07:29] 2025-06-04 15:07:02,711 | INFO     | log transfer has been attempted: DONE
[2025-06-04 11:07:29] 2025-06-04 15:07:02,711 | INFO     | job 6679635323 has finished - writing final server update
[2025-06-04 11:07:29] 2025-06-04 15:07:02,711 | INFO     | total number of processed events: 400 (read)
[2025-06-04 11:07:29] 2025-06-04 15:07:02,736 | INFO     | executing command: lscpu
[2025-06-04 11:07:29] 2025-06-04 15:07:02,796 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 11:07:29] 2025-06-04 15:07:04,031 | INFO     | monitor loop #228: job 0:6679635323 is in state 'finished'
[2025-06-04 11:07:29] 2025-06-04 15:07:04,032 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 11:07:29] 2025-06-04 15:07:06,534 | INFO     | monitor loop #229: job 0:6679635323 is in state 'finished'
[2025-06-04 11:07:29] 2025-06-04 15:07:06,534 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 11:07:29] 2025-06-04 15:07:07,878 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 11:07:29] 2025-06-04 15:07:07,879 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6679635323/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 11:07:29] 2025-06-04 15:07:07,880 | INFO     | extracted standard info from prmon json
[2025-06-04 11:07:29] 2025-06-04 15:07:07,880 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 11:07:29] 2025-06-04 15:07:07,880 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 11:07:29] 2025-06-04 15:07:07,880 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 11:07:29] 2025-06-04 15:07:07,880 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 11:07:29] 2025-06-04 15:07:07,881 | INFO     | fitting pss+swap vs Time
[2025-06-04 11:07:29] 2025-06-04 15:07:07,881 | INFO     | sum of square deviations: 28242390.0
[2025-06-04 11:07:29] 2025-06-04 15:07:07,882 | INFO     | sum of deviations: 3764920427.0
[2025-06-04 11:07:29] 2025-06-04 15:07:07,882 | INFO     | mean x: 1749048110.0
[2025-06-04 11:07:29] 2025-06-04 15:07:07,882 | INFO     | mean y: 2175402.488888889
[2025-06-04 11:07:29] 2025-06-04 15:07:07,882 | INFO     | -- intersect: -233158933028.65817
[2025-06-04 11:07:29] 2025-06-04 15:07:07,882 | INFO     | intersect: -233158933028.65817
[2025-06-04 11:07:29] 2025-06-04 15:07:07,882 | INFO     | chi2: 0.7781807808749758
[2025-06-04 11:07:29] 2025-06-04 15:07:07,882 | INFO     | -- intersect: -233158933028.65817
[2025-06-04 11:07:29] 2025-06-04 15:07:07,882 | INFO     | current memory leak: 133.31 B/s (using 45 data points, chi2=0.78)
[2025-06-04 11:07:29] 2025-06-04 15:07:07,882 | INFO     | ..............................
[2025-06-04 11:07:29] 2025-06-04 15:07:07,882 | INFO     | . Timing measurements:
[2025-06-04 11:07:29] 2025-06-04 15:07:07,882 | INFO     | . get job = 0 s
[2025-06-04 11:07:29] 2025-06-04 15:07:07,882 | INFO     | . initial setup = 2 s
[2025-06-04 11:07:29] 2025-06-04 15:07:07,882 | INFO     | . payload setup = 9 s
[2025-06-04 11:07:29] 2025-06-04 15:07:07,882 | INFO     | . stage-in = 0 s
[2025-06-04 11:07:29] 2025-06-04 15:07:07,882 | INFO     | . payload execution = 3158 s
[2025-06-04 11:07:29] 2025-06-04 15:07:07,882 | INFO     | . stage-out = 0 s
[2025-06-04 11:07:29] 2025-06-04 15:07:07,882 | INFO     | . log creation = 0 s
[2025-06-04 11:07:29] 2025-06-04 15:07:07,882 | INFO     | ..............................
[2025-06-04 11:07:29] 2025-06-04 15:07:07,939 | INFO     | 
[2025-06-04 11:07:29] 2025-06-04 15:07:07,939 | INFO     | job summary report
[2025-06-04 11:07:29] 2025-06-04 15:07:07,939 | INFO     | --------------------------------------------------
[2025-06-04 11:07:29] 2025-06-04 15:07:07,939 | INFO     | PanDA job id: 6679635323
[2025-06-04 11:07:29] 2025-06-04 15:07:07,939 | INFO     | task id: 45006595
[2025-06-04 11:07:29] 2025-06-04 15:07:07,939 | INFO     | errors: (none)
[2025-06-04 11:07:29] 2025-06-04 15:07:07,939 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 11:07:29] 2025-06-04 15:07:07,939 | INFO     | pilot state: finished 
[2025-06-04 11:07:29] 2025-06-04 15:07:07,939 | INFO     | transexitcode: 0
[2025-06-04 11:07:29] 2025-06-04 15:07:07,939 | INFO     | exeerrorcode: 0
[2025-06-04 11:07:29] 2025-06-04 15:07:07,939 | INFO     | exeerrordiag: 
[2025-06-04 11:07:29] 2025-06-04 15:07:07,939 | INFO     | exitcode: 0
[2025-06-04 11:07:29] 2025-06-04 15:07:07,940 | INFO     | exitmsg: OK
[2025-06-04 11:07:29] 2025-06-04 15:07:07,940 | INFO     | cpuconsumptiontime: 19608 s
[2025-06-04 11:07:29] 2025-06-04 15:07:07,940 | INFO     | nevents: 400
[2025-06-04 11:07:29] 2025-06-04 15:07:07,940 | INFO     | neventsw: 0
[2025-06-04 11:07:29] 2025-06-04 15:07:07,940 | INFO     | pid: 764433
[2025-06-04 11:07:29] 2025-06-04 15:07:07,940 | INFO     | pgrp: 764433
[2025-06-04 11:07:29] 2025-06-04 15:07:07,940 | INFO     | corecount: 8
[2025-06-04 11:07:29] 2025-06-04 15:07:07,940 | INFO     | event service: False
[2025-06-04 11:07:29] 2025-06-04 15:07:07,940 | INFO     | sizes: {0: 2396501, 1: 2397357, 7: 2397563, 11: 2397591, 3171: 2423028, 3173: 2432153, 3180: 2432267}
[2025-06-04 11:07:29] 2025-06-04 15:07:07,940 | INFO     | --------------------------------------------------
[2025-06-04 11:07:29] 2025-06-04 15:07:07,940 | INFO     | 
[2025-06-04 11:07:29] 2025-06-04 15:07:07,940 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-06-04 11:07:29] 2025-06-04 15:07:07,961 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 11:07:29] 2025-06-04 15:07:07,961 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 11:07:29] 2025-06-04 15:07:07,961 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 11:07:29] 2025-06-04 15:07:07,961 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 11:07:29] 2025-06-04 15:07:07,961 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 11:07:29] 2025-06-04 15:07:07,961 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 11:07:29] 2025-06-04 15:07:07,961 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 11:07:29] 2025-06-04 15:07:07,961 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 11:07:29] 2025-06-04 15:07:07,961 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 11:07:29] 2025-06-04 15:07:07,961 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 11:07:29] 2025-06-04 15:07:07,961 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 11:07:29] 2025-06-04 15:07:07,961 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 11:07:29] 2025-06-04 15:07:07,962 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 11:07:29] 2025-06-04 15:07:07,962 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 11:07:29] 2025-06-04 15:07:07,962 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 11:07:29] 2025-06-04 15:07:07,962 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 11:07:29] 2025-06-04 15:07:07,962 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 11:07:29] 2025-06-04 15:07:07,962 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 11:07:29] 2025-06-04 15:07:07,962 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 11:07:29] 2025-06-04 15:07:07,962 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 11:07:29] 2025-06-04 15:07:07,962 | INFO     | job 6679635323 has completed (purged errors)
[2025-06-04 11:07:29] 2025-06-04 15:07:07,962 | INFO     | overall cleanup function is called
[2025-06-04 11:07:29] 2025-06-04 15:07:08,970 | INFO     | --- collectZombieJob: --- 10, [764433]
[2025-06-04 11:07:29] 2025-06-04 15:07:08,970 | INFO     | zombie collector waiting for pid 764433
[2025-06-04 11:07:29] 2025-06-04 15:07:08,970 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 11:07:29] 2025-06-04 15:07:08,970 | INFO     | collected zombie processes
[2025-06-04 11:07:29] 2025-06-04 15:07:08,970 | INFO     | will attempt to kill all subprocesses of pid=764433
[2025-06-04 11:07:29] 2025-06-04 15:07:09,453 | INFO     | process IDs to be killed: [764433] (in reverse order)
[2025-06-04 11:07:29] 2025-06-04 15:07:09,650 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 11:07:29] 2025-06-04 15:07:09,651 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 11:07:29] 2025-06-04 15:07:09,681 | INFO     | did not find any defunct processes belonging to 764433
[2025-06-04 11:07:29] 2025-06-04 15:07:09,710 | INFO     | did not find any defunct processes belonging to 764433
[2025-06-04 11:07:29] 2025-06-04 15:07:09,710 | INFO     | ready for new job
[2025-06-04 11:07:29] 2025-06-04 15:07:09,711 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 11:07:29] 2025-06-04 15:07:09,711 | INFO     | **************************************
[2025-06-04 11:07:29] 2025-06-04 15:07:09,712 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 11:07:29] 2025-06-04 15:07:09,712 | INFO     | **************************************
[2025-06-04 11:07:29] 2025-06-04 15:07:09,712 | INFO     | 
[2025-06-04 11:07:29] 2025-06-04 15:07:09,729 | INFO     | architecture information:
[2025-06-04 11:07:29] 2025-06-04 15:07:09,729 | INFO     | executing command: cat /etc/os-release
[2025-06-04 11:07:29] 2025-06-04 15:07:09,743 | INFO     | cat /etc/os-release:
[2025-06-04 11:07:29] NAME="CentOS Linux"
[2025-06-04 11:07:29] VERSION="7 (Core)"
[2025-06-04 11:07:29] ID="centos"
[2025-06-04 11:07:29] ID_LIKE="rhel fedora"
[2025-06-04 11:07:29] VERSION_ID="7"
[2025-06-04 11:07:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 11:07:29] ANSI_COLOR="0;31"
[2025-06-04 11:07:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 11:07:29] HOME_URL="https://www.centos.org/"
[2025-06-04 11:07:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 11:07:29] 
[2025-06-04 11:07:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 11:07:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 11:07:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 11:07:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 11:07:29] 
[2025-06-04 11:07:29] 2025-06-04 15:07:09,744 | INFO     | **************************************
[2025-06-04 11:07:29] 2025-06-04 15:07:10,253 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-06-04 11:07:29] 2025-06-04 15:07:10,276 | INFO     | sufficient remaining disk space (172256919552 B)
[2025-06-04 11:07:29] 2025-06-04 15:07:10,276 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 11:07:29] 2025-06-04 15:07:10,276 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 11:07:29] 2025-06-04 15:07:10,276 | INFO     | update_server=False
[2025-06-04 11:07:29] 2025-06-04 15:07:10,276 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 11:07:29] 2025-06-04 15:07:10,276 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 11:07:29] 2025-06-04 15:07:10,277 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 11:07:29] 2025-06-04 15:07:10,277 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 11:07:29] 2025-06-04 15:07:10,277 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 11:07:29] 2025-06-04 15:07:10,277 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:07:29] 2025-06-04 15:07:10,277 | INFO     | aborting loop
[2025-06-04 11:07:29] 2025-06-04 15:07:11,111 | INFO     | all data control threads have been joined
[2025-06-04 11:07:29] 2025-06-04 15:07:11,281 | INFO     | [job] retrieve thread has finished
[2025-06-04 11:07:29] 2025-06-04 15:07:11,282 | INFO     | [job] job monitor thread has finished
[2025-06-04 11:07:29] 2025-06-04 15:07:11,577 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 11:07:29] 2025-06-04 15:07:11,645 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 11:07:29] 2025-06-04 15:07:11,674 | INFO     | all payload control threads have been joined
[2025-06-04 11:07:29] 2025-06-04 15:07:11,702 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 11:07:29] 2025-06-04 15:07:11,746 | INFO     | all job control threads have been joined
[2025-06-04 11:07:29] 2025-06-04 15:07:11,842 | INFO     | [payload] failed_post thread has finished
[2025-06-04 11:07:29] 2025-06-04 15:07:12,116 | INFO     | [data] control thread has finished
[2025-06-04 11:07:29] 2025-06-04 15:07:12,159 | INFO     | [data] copytool_in thread has finished
[2025-06-04 11:07:29] 2025-06-04 15:07:12,207 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 11:07:29] 2025-06-04 15:07:12,211 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 11:07:29] 2025-06-04 15:07:12,280 | INFO     | [job] validate thread has finished
[2025-06-04 11:07:29] 2025-06-04 15:07:12,573 | INFO     | [payload] validate_post thread has finished
[2025-06-04 11:07:29] 2025-06-04 15:07:12,679 | INFO     | [payload] control thread has finished
[2025-06-04 11:07:29] 2025-06-04 15:07:12,752 | INFO     | [job] control thread has finished
[2025-06-04 11:07:29] 2025-06-04 15:07:12,950 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:07:29] 2025-06-04 15:07:13,582 | INFO     | [data] copytool_out thread has finished
[2025-06-04 11:07:29] 2025-06-04 15:07:13,955 | INFO     | [job] queue monitor thread has finished
[2025-06-04 11:07:29] 2025-06-04 15:07:15,653 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 11:07:29] 2025-06-04 15:07:20,992 | INFO     | job.realtimelogging is not enabled
[2025-06-04 11:07:29] 2025-06-04 15:07:21,998 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 11:07:29] 2025-06-04 15:07:23,534 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140091226044224)>', '<ExcThread(monitor, started 140090206574336)>']
[2025-06-04 11:07:29] 2025-06-04 15:07:24,362 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 11:07:29] 2025-06-04 15:07:24,363 | INFO     | [monitor] control thread has ended
[2025-06-04 11:07:29] 2025-06-04 15:07:28,560 | INFO     | all workflow threads have been joined
[2025-06-04 11:07:29] 2025-06-04 15:07:28,560 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 11:07:29] 2025-06-04 15:07:28,560 | INFO     | traces error code: 0
[2025-06-04 11:07:29] 2025-06-04 15:07:28,561 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 11:07:29] 2025-06-04 15:07:28,852 [wrapper] ==== pilot stdout END ====
[2025-06-04 11:07:29] 2025-06-04 15:07:28,866 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 11:07:29] 2025-06-04 15:07:28,884 [wrapper] pilotpid: 678987
[2025-06-04 11:07:29] 2025-06-04 15:07:28,902 [wrapper] Pilot exit status: 0
[2025-06-04 11:07:29] 2025-06-04 15:07:28,961 [wrapper] pandaids: 6679635323
[2025-06-04 11:07:29] 2025-06-04 15:07:29,144 [wrapper] cleanup supervisor_pilot 2170993 678989
[2025-06-04 11:07:29] 2025-06-04 15:07:29,150 [wrapper] Test setup, not cleaning
[2025-06-04 11:07:29] 2025-06-04 15:07:29,154 [wrapper] apfmon messages muted
[2025-06-04 11:07:29] 2025-06-04 15:07:29,168 [wrapper] ==== wrapper stdout END ====
[2025-06-04 11:07:29] 2025-06-04 15:07:29,179 [wrapper] ==== wrapper stderr END ====
[2025-06-04 11:07:29]  *** Error codes and diagnostics ***
[2025-06-04 11:07:29]     "exeErrorCode": 0,
[2025-06-04 11:07:29]     "exeErrorDiag": "",
[2025-06-04 11:07:29]     "pilotErrorCode": 0,
[2025-06-04 11:07:29]     "pilotErrorDiag": "",
[2025-06-04 11:07:29]  *** Listing of results directory ***
[2025-06-04 11:07:29] total 392316
[2025-06-04 11:07:29] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 06:59 pilot3.tar.gz
[2025-06-04 11:07:29] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 06:59 queuedata.json
[2025-06-04 11:07:29] -rwx------. 1 boincer umatlas     37140 Jun  4 07:00 runpilot2-wrapper.sh
[2025-06-04 11:07:29] -rw-r--r--. 1 boincer umatlas       100 Jun  4 10:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 11:07:29] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 10:13 run_atlas
[2025-06-04 11:07:29] -rw-r--r--. 1 boincer umatlas       105 Jun  4 10:13 job.xml
[2025-06-04 11:07:29] -rw-r--r--. 2 boincer umatlas 217284703 Jun  4 10:13 EVNT.45006593._000035.pool.root.1
[2025-06-04 11:07:29] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 10:13 start_atlas.sh
[2025-06-04 11:07:29] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 10:13 shared
[2025-06-04 11:07:29] -rw-r--r--. 2 boincer umatlas    508875 Jun  4 10:13 input.tar.gz
[2025-06-04 11:07:29] -rw-r--r--. 1 boincer umatlas         0 Jun  4 10:13 boinc_lockfile
[2025-06-04 11:07:29] -rw-r--r--. 1 boincer umatlas      2518 Jun  4 10:13 pandaJob.out
[2025-06-04 11:07:29] -rw-------. 1 boincer umatlas    986819 Jun  4 10:13 agis_schedconf.cvmfs.json
[2025-06-04 11:07:29] -rw-------. 1 boincer umatlas   1598969 Jun  4 10:13 agis_ddmendpoints.agis.ALL.json
[2025-06-04 11:07:29] drwx------. 4 boincer umatlas      4096 Jun  4 10:13 pilot3
[2025-06-04 11:07:29] -rw-r--r--. 1 boincer umatlas      7160 Jun  4 11:02 init_data.xml
[2025-06-04 11:07:29] -rw-------. 1 boincer umatlas 179398363 Jun  4 11:06 HITS.45006595._056558.pool.root.1
[2025-06-04 11:07:29] -rw-r--r--. 1 boincer umatlas       529 Jun  4 11:06 boinc_task_state.xml
[2025-06-04 11:07:29] -rw-------. 1 boincer umatlas        95 Jun  4 11:06 pilot_heartbeat.json
[2025-06-04 11:07:29] -rw-------. 1 boincer umatlas      1036 Jun  4 11:06 memory_monitor_summary.json
[2025-06-04 11:07:29] -rw-------. 1 boincer umatlas    279601 Jun  4 11:07 log.45006595._056558.job.log.tgz.1
[2025-06-04 11:07:29] -rw-------. 1 boincer umatlas      7684 Jun  4 11:07 heartbeat.json
[2025-06-04 11:07:29] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 11:07 boinc_mmap_file
[2025-06-04 11:07:29] -rw-r--r--. 1 boincer umatlas        27 Jun  4 11:07 wrapper_checkpoint.txt
[2025-06-04 11:07:29] -rw-------. 1 boincer umatlas      4549 Jun  4 11:07 pilotlog.txt
[2025-06-04 11:07:29] -rw-------. 1 boincer umatlas    328394 Jun  4 11:07 log.45006595._056558.job.log.1
[2025-06-04 11:07:29] -rw-------. 1 boincer umatlas       357 Jun  4 11:07 output.list
[2025-06-04 11:07:29] -rw-r--r--. 1 boincer umatlas       620 Jun  4 11:07 runtime_log
[2025-06-04 11:07:29] -rw-------. 1 boincer umatlas    624640 Jun  4 11:07 result.tar.gz
[2025-06-04 11:07:29] -rw-------. 1 boincer umatlas       650 Jun  4 11:07 T6PMDm510g7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmAynKDmih3XTn.diag
[2025-06-04 11:07:29] -rw-r--r--. 1 boincer umatlas      8649 Jun  4 11:07 runtime_log.err
[2025-06-04 11:07:29] -rw-r--r--. 1 boincer umatlas     21311 Jun  4 11:07 stderr.txt
[2025-06-04 11:07:29] HITS file was successfully produced:
[2025-06-04 11:07:29] -rw-------. 1 boincer umatlas 179398363 Jun  4 11:06 shared/HITS.pool.root.1
[2025-06-04 11:07:29]  *** Contents of shared directory: ***
[2025-06-04 11:07:29] total 388524
[2025-06-04 11:07:29] -rw-r--r--. 2 boincer umatlas 217284703 Jun  4 10:13 ATLAS.root_0
[2025-06-04 11:07:29] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 10:13 start_atlas.sh
[2025-06-04 11:07:29] -rw-r--r--. 2 boincer umatlas    508875 Jun  4 10:13 input.tar.gz
[2025-06-04 11:07:29] -rw-------. 1 boincer umatlas 179398363 Jun  4 11:06 HITS.pool.root.1
[2025-06-04 11:07:29] -rw-------. 1 boincer umatlas    624640 Jun  4 11:07 result.tar.gz
11:07:30 (668543): run_atlas exited; CPU time 19690.624807
11:07:30 (668543): called boinc_finish(0)

</stderr_txt>
]]>

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