Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:47:09 (39314): wrapper (7.7.26015): starting
09:47:09 (39314): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 09:47:09] Arguments: --nthreads 8
[2025-06-04 09:47:09] Threads: 8
[2025-06-04 09:47:09] Checking for CVMFS
[2025-06-04 09:47:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 09:47:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 09:47:09] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 09:47:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 09:47:10] 2.11.2.0 74184 12773 359324 146781 1 457 18414764 18432000 12784 130560 0 76283741 99.625 56693070 42707 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 09:47:10] CVMFS is ok
[2025-06-04 09:47:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 09:47:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 09:47:10] Further information can be found at the LHC@home message board.
[2025-06-04 09:47:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 09:47:10] Checking for apptainer binary...
[2025-06-04 09:47:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 09:47:10] Running /usr/bin/apptainer --version
[2025-06-04 09:47:10] apptainer version 1.3.2-1.el7
[2025-06-04 09:47:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 09:47:11] c-212-13.aglt2.org
[2025-06-04 09:47:11] apptainer works
[2025-06-04 09:47:11] Set ATHENA_PROC_NUMBER=8
[2025-06-04 09:47:11] Set ATHENA_CORE_NUMBER=8
[2025-06-04 09:47:11] Starting ATLAS job with PandaID=6678593019
[2025-06-04 09:47:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 10:52:52]  *** The last 200 lines of the pilot log: ***
[2025-06-04 10:52:52]  is_tar=False
[2025-06-04 10:52:52]  lfn=log.45006595._055418.job.log.tgz.1
[2025-06-04 10:52:52]  mtime=0
[2025-06-04 10:52:52]  protocol_id=None
[2025-06-04 10:52:52]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 10:52:52]  replicas=None
[2025-06-04 10:52:52]  scope=mc23_13p6TeV
[2025-06-04 10:52:52]  status=None
[2025-06-04 10:52:52]  status_code=0
[2025-06-04 10:52:52]  storage_token=
[2025-06-04 10:52:52]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6678593019/log.45006595._055418.job.log.tgz.1
[2025-06-04 10:52:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/48/50/log.45006595._055418.job.log.tgz.1
[2025-06-04 10:52:52]  workdir=None
[2025-06-04 10:52:52] ]
[2025-06-04 10:52:52] 2025-06-04 14:52:21,280 | INFO     | transferring file log.45006595._055418.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6678593019/log.45006595._055418.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 10:52:52] 2025-06-04 14:52:21,280 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6678593019/log.45006595._055418.job.log.tgz.1 /tmp/boinchome/slots/1/log.45006595._055418.job
[2025-06-04 10:52:52] 2025-06-04 14:52:21,311 | INFO     | adding to output.list: log.45006595._055418.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/48/50/log.45006595._055418.job.log.tg
[2025-06-04 10:52:52] 2025-06-04 14:52:21,312 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 10:52:52] 2025-06-04 14:52:21,312 | INFO     | summary of transferred files:
[2025-06-04 10:52:52] 2025-06-04 14:52:21,312 | INFO     |  -- lfn=log.45006595._055418.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 10:52:52] 2025-06-04 14:52:21,312 | INFO     | stage-out finished correctly
[2025-06-04 10:52:52] 2025-06-04 14:52:21,775 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 10:52:52] 2025-06-04 14:52:22,935 | INFO     | monitor loop #295: job 0:6678593019 is in state 'finished'
[2025-06-04 10:52:52] 2025-06-04 14:52:22,935 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 10:52:52] 2025-06-04 14:52:24,510 | INFO     | job 6678593019 has state=finished
[2025-06-04 10:52:52] 2025-06-04 14:52:24,511 | INFO     | preparing for final server update for job 6678593019 in state='finished'
[2025-06-04 10:52:52] 2025-06-04 14:52:24,511 | INFO     | this job has now completed (state=finished)
[2025-06-04 10:52:52] 2025-06-04 14:52:24,511 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 10:52:52] 2025-06-04 14:52:24,511 | INFO     | log transfer has been attempted: DONE
[2025-06-04 10:52:52] 2025-06-04 14:52:24,512 | INFO     | job 6678593019 has finished - writing final server update
[2025-06-04 10:52:52] 2025-06-04 14:52:24,512 | INFO     | total number of processed events: 400 (read)
[2025-06-04 10:52:52] 2025-06-04 14:52:24,517 | INFO     | executing command: lscpu
[2025-06-04 10:52:52] 2025-06-04 14:52:24,569 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 10:52:52] 2025-06-04 14:52:25,438 | INFO     | monitor loop #296: job 0:6678593019 is in state 'finished'
[2025-06-04 10:52:52] 2025-06-04 14:52:25,439 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 10:52:52] 2025-06-04 14:52:27,942 | INFO     | monitor loop #297: job 0:6678593019 is in state 'finished'
[2025-06-04 10:52:52] 2025-06-04 14:52:27,942 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 10:52:52] 2025-06-04 14:52:30,446 | INFO     | monitor loop #298: job 0:6678593019 is in state 'finished'
[2025-06-04 10:52:52] 2025-06-04 14:52:30,446 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 10:52:52] 2025-06-04 14:52:31,404 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 10:52:52] 2025-06-04 14:52:31,404 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6678593019/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 10:52:52] 2025-06-04 14:52:31,405 | INFO     | extracted standard info from prmon json
[2025-06-04 10:52:52] 2025-06-04 14:52:31,405 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 10:52:52] 2025-06-04 14:52:31,405 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 10:52:52] 2025-06-04 14:52:31,405 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 10:52:52] 2025-06-04 14:52:31,405 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 10:52:52] 2025-06-04 14:52:31,407 | INFO     | fitting pss+swap vs Time
[2025-06-04 10:52:52] 2025-06-04 14:52:31,407 | INFO     | sum of square deviations: 57407588.0
[2025-06-04 10:52:52] 2025-06-04 14:52:31,407 | INFO     | sum of deviations: -636415562.0000001
[2025-06-04 10:52:52] 2025-06-04 14:52:31,407 | INFO     | mean x: 1749046897.0
[2025-06-04 10:52:52] 2025-06-04 14:52:31,407 | INFO     | mean y: 2526087.98245614
[2025-06-04 10:52:52] 2025-06-04 14:52:31,407 | INFO     | -- intersect: 19392308914.576935
[2025-06-04 10:52:52] 2025-06-04 14:52:31,407 | INFO     | intersect: 19392308914.576935
[2025-06-04 10:52:52] 2025-06-04 14:52:31,408 | INFO     | chi2: 0.003320387542736801
[2025-06-04 10:52:52] 2025-06-04 14:52:31,408 | INFO     | -- intersect: 19392308914.576935
[2025-06-04 10:52:52] 2025-06-04 14:52:31,408 | INFO     | current memory leak: -11.09 B/s (using 57 data points, chi2=0.00)
[2025-06-04 10:52:52] 2025-06-04 14:52:31,408 | INFO     | ..............................
[2025-06-04 10:52:52] 2025-06-04 14:52:31,408 | INFO     | . Timing measurements:
[2025-06-04 10:52:52] 2025-06-04 14:52:31,408 | INFO     | . get job = 0 s
[2025-06-04 10:52:52] 2025-06-04 14:52:31,408 | INFO     | . initial setup = 2 s
[2025-06-04 10:52:52] 2025-06-04 14:52:31,408 | INFO     | . payload setup = 10 s
[2025-06-04 10:52:52] 2025-06-04 14:52:31,408 | INFO     | . stage-in = 0 s
[2025-06-04 10:52:52] 2025-06-04 14:52:31,408 | INFO     | . payload execution = 3861 s
[2025-06-04 10:52:52] 2025-06-04 14:52:31,408 | INFO     | . stage-out = 1 s
[2025-06-04 10:52:52] 2025-06-04 14:52:31,408 | INFO     | . log creation = 0 s
[2025-06-04 10:52:52] 2025-06-04 14:52:31,409 | INFO     | ..............................
[2025-06-04 10:52:52] 2025-06-04 14:52:31,476 | INFO     | 
[2025-06-04 10:52:52] 2025-06-04 14:52:31,476 | INFO     | job summary report
[2025-06-04 10:52:52] 2025-06-04 14:52:31,477 | INFO     | --------------------------------------------------
[2025-06-04 10:52:52] 2025-06-04 14:52:31,477 | INFO     | PanDA job id: 6678593019
[2025-06-04 10:52:52] 2025-06-04 14:52:31,477 | INFO     | task id: 45006595
[2025-06-04 10:52:52] 2025-06-04 14:52:31,477 | INFO     | errors: (none)
[2025-06-04 10:52:52] 2025-06-04 14:52:31,477 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 10:52:52] 2025-06-04 14:52:31,477 | INFO     | pilot state: finished 
[2025-06-04 10:52:52] 2025-06-04 14:52:31,477 | INFO     | transexitcode: 0
[2025-06-04 10:52:52] 2025-06-04 14:52:31,477 | INFO     | exeerrorcode: 0
[2025-06-04 10:52:52] 2025-06-04 14:52:31,477 | INFO     | exeerrordiag: 
[2025-06-04 10:52:52] 2025-06-04 14:52:31,477 | INFO     | exitcode: 0
[2025-06-04 10:52:52] 2025-06-04 14:52:31,477 | INFO     | exitmsg: OK
[2025-06-04 10:52:52] 2025-06-04 14:52:31,477 | INFO     | cpuconsumptiontime: 27104 s
[2025-06-04 10:52:52] 2025-06-04 14:52:31,477 | INFO     | nevents: 400
[2025-06-04 10:52:52] 2025-06-04 14:52:31,477 | INFO     | neventsw: 0
[2025-06-04 10:52:52] 2025-06-04 14:52:31,477 | INFO     | pid: 51602
[2025-06-04 10:52:52] 2025-06-04 14:52:31,477 | INFO     | pgrp: 51602
[2025-06-04 10:52:52] 2025-06-04 14:52:31,477 | INFO     | corecount: 8
[2025-06-04 10:52:52] 2025-06-04 14:52:31,477 | INFO     | event service: False
[2025-06-04 10:52:52] 2025-06-04 14:52:31,478 | INFO     | sizes: {0: 2397286, 6: 2397492, 11: 2397520, 3875: 2423192, 3876: 2432133, 3877: 2432189, 3887: 2432487}
[2025-06-04 10:52:52] 2025-06-04 14:52:31,478 | INFO     | --------------------------------------------------
[2025-06-04 10:52:52] 2025-06-04 14:52:31,478 | INFO     | 
[2025-06-04 10:52:52] 2025-06-04 14:52:31,478 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-04 10:52:52] 2025-06-04 14:52:31,496 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 10:52:52] 2025-06-04 14:52:31,496 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 10:52:52] 2025-06-04 14:52:31,496 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 10:52:52] 2025-06-04 14:52:31,496 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 10:52:52] 2025-06-04 14:52:31,496 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 10:52:52] 2025-06-04 14:52:31,496 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 10:52:52] 2025-06-04 14:52:31,496 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 10:52:52] 2025-06-04 14:52:31,496 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 10:52:52] 2025-06-04 14:52:31,496 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 10:52:52] 2025-06-04 14:52:31,497 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 10:52:52] 2025-06-04 14:52:31,497 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 10:52:52] 2025-06-04 14:52:31,497 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 10:52:52] 2025-06-04 14:52:31,497 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 10:52:52] 2025-06-04 14:52:31,497 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 10:52:52] 2025-06-04 14:52:31,497 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 10:52:52] 2025-06-04 14:52:31,497 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 10:52:52] 2025-06-04 14:52:31,497 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 10:52:52] 2025-06-04 14:52:31,497 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 10:52:52] 2025-06-04 14:52:31,497 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 10:52:52] 2025-06-04 14:52:31,497 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 10:52:52] 2025-06-04 14:52:31,497 | INFO     | job 6678593019 has completed (purged errors)
[2025-06-04 10:52:52] 2025-06-04 14:52:31,497 | INFO     | overall cleanup function is called
[2025-06-04 10:52:52] 2025-06-04 14:52:32,505 | INFO     | --- collectZombieJob: --- 10, [51602]
[2025-06-04 10:52:52] 2025-06-04 14:52:32,505 | INFO     | zombie collector waiting for pid 51602
[2025-06-04 10:52:52] 2025-06-04 14:52:32,505 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 10:52:52] 2025-06-04 14:52:32,505 | INFO     | collected zombie processes
[2025-06-04 10:52:52] 2025-06-04 14:52:32,505 | INFO     | will attempt to kill all subprocesses of pid=51602
[2025-06-04 10:52:52] 2025-06-04 14:52:32,780 | INFO     | process IDs to be killed: [51602] (in reverse order)
[2025-06-04 10:52:52] 2025-06-04 14:52:32,847 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 10:52:52] 2025-06-04 14:52:32,847 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 10:52:52] 2025-06-04 14:52:32,853 | INFO     | did not find any defunct processes belonging to 51602
[2025-06-04 10:52:52] 2025-06-04 14:52:32,859 | INFO     | did not find any defunct processes belonging to 51602
[2025-06-04 10:52:52] 2025-06-04 14:52:32,859 | INFO     | ready for new job
[2025-06-04 10:52:52] 2025-06-04 14:52:32,859 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 10:52:52] 2025-06-04 14:52:32,860 | INFO     | **************************************
[2025-06-04 10:52:52] 2025-06-04 14:52:32,860 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 10:52:52] 2025-06-04 14:52:32,860 | INFO     | **************************************
[2025-06-04 10:52:52] 2025-06-04 14:52:32,860 | INFO     | 
[2025-06-04 10:52:52] 2025-06-04 14:52:32,862 | INFO     | architecture information:
[2025-06-04 10:52:52] 2025-06-04 14:52:32,863 | INFO     | executing command: cat /etc/os-release
[2025-06-04 10:52:52] 2025-06-04 14:52:32,873 | INFO     | cat /etc/os-release:
[2025-06-04 10:52:52] NAME="CentOS Linux"
[2025-06-04 10:52:52] VERSION="7 (Core)"
[2025-06-04 10:52:52] ID="centos"
[2025-06-04 10:52:52] ID_LIKE="rhel fedora"
[2025-06-04 10:52:52] VERSION_ID="7"
[2025-06-04 10:52:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 10:52:52] ANSI_COLOR="0;31"
[2025-06-04 10:52:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 10:52:52] HOME_URL="https://www.centos.org/"
[2025-06-04 10:52:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 10:52:52] 
[2025-06-04 10:52:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 10:52:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 10:52:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 10:52:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 10:52:52] 
[2025-06-04 10:52:52] 2025-06-04 14:52:32,873 | INFO     | **************************************
[2025-06-04 10:52:52] 2025-06-04 14:52:33,376 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-04 10:52:52] 2025-06-04 14:52:33,506 | INFO     | sufficient remaining disk space (104204337152 B)
[2025-06-04 10:52:52] 2025-06-04 14:52:33,506 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 10:52:52] 2025-06-04 14:52:33,506 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 10:52:52] 2025-06-04 14:52:33,506 | INFO     | update_server=False
[2025-06-04 10:52:52] 2025-06-04 14:52:33,507 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 10:52:52] 2025-06-04 14:52:33,507 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 10:52:52] 2025-06-04 14:52:33,507 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 10:52:52] 2025-06-04 14:52:33,507 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 10:52:52] 2025-06-04 14:52:33,507 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 10:52:52] 2025-06-04 14:52:33,531 | INFO     | all job control threads have been joined
[2025-06-04 10:52:52] 2025-06-04 14:52:33,959 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:52:52] 2025-06-04 14:52:33,959 | INFO     | aborting loop
[2025-06-04 10:52:52] 2025-06-04 14:52:34,380 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 10:52:52] 2025-06-04 14:52:34,512 | INFO     | [job] retrieve thread has finished
[2025-06-04 10:52:52] 2025-06-04 14:52:34,513 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 10:52:52] 2025-06-04 14:52:34,537 | INFO     | [job] control thread has finished
[2025-06-04 10:52:52] 2025-06-04 14:52:34,577 | INFO     | all data control threads have been joined
[2025-06-04 10:52:52] 2025-06-04 14:52:34,781 | INFO     | all payload control threads have been joined
[2025-06-04 10:52:52] 2025-06-04 14:52:34,965 | INFO     | [job] job monitor thread has finished
[2025-06-04 10:52:52] 2025-06-04 14:52:35,484 | INFO     | [job] validate thread has finished
[2025-06-04 10:52:52] 2025-06-04 14:52:35,534 | INFO     | [payload] validate_post thread has finished
[2025-06-04 10:52:52] 2025-06-04 14:52:35,582 | INFO     | [data] control thread has finished
[2025-06-04 10:52:52] 2025-06-04 14:52:35,625 | INFO     | [data] copytool_in thread has finished
[2025-06-04 10:52:52] 2025-06-04 14:52:35,663 | INFO     | [payload] failed_post thread has finished
[2025-06-04 10:52:52] 2025-06-04 14:52:35,722 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 10:52:52] 2025-06-04 14:52:35,786 | INFO     | [payload] control thread has finished
[2025-06-04 10:52:52] 2025-06-04 14:52:35,916 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 10:52:52] 2025-06-04 14:52:36,382 | INFO     | [data] copytool_out thread has finished
[2025-06-04 10:52:52] 2025-06-04 14:52:36,489 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:52:52] 2025-06-04 14:52:36,860 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 10:52:52] 2025-06-04 14:52:37,495 | INFO     | [job] queue monitor thread has finished
[2025-06-04 10:52:52] 2025-06-04 14:52:40,866 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 10:52:52] 2025-06-04 14:52:44,398 | INFO     | job.realtimelogging is not enabled
[2025-06-04 10:52:52] 2025-06-04 14:52:45,399 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 10:52:52] 2025-06-04 14:52:46,371 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139688514516800)>', '<ExcThread(monitor, started 139688090261248)>']
[2025-06-04 10:52:52] 2025-06-04 14:52:46,563 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 10:52:52] 2025-06-04 14:52:46,563 | INFO     | [monitor] control thread has ended
[2025-06-04 10:52:52] 2025-06-04 14:52:51,397 | INFO     | all workflow threads have been joined
[2025-06-04 10:52:52] 2025-06-04 14:52:51,397 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 10:52:52] 2025-06-04 14:52:51,398 | INFO     | traces error code: 0
[2025-06-04 10:52:52] 2025-06-04 14:52:51,398 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 10:52:52] 2025-06-04 14:52:51,606 [wrapper] ==== pilot stdout END ====
[2025-06-04 10:52:52] 2025-06-04 14:52:51,609 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 10:52:52] 2025-06-04 14:52:51,612 [wrapper] pilotpid: 42949
[2025-06-04 10:52:52] 2025-06-04 14:52:51,614 [wrapper] Pilot exit status: 0
[2025-06-04 10:52:52] 2025-06-04 14:52:51,624 [wrapper] pandaids: 6678593019
[2025-06-04 10:52:52] 2025-06-04 14:52:51,668 [wrapper] cleanup supervisor_pilot 56716 42950
[2025-06-04 10:52:52] 2025-06-04 14:52:51,670 [wrapper] Test setup, not cleaning
[2025-06-04 10:52:52] 2025-06-04 14:52:51,672 [wrapper] apfmon messages muted
[2025-06-04 10:52:52] 2025-06-04 14:52:51,673 [wrapper] ==== wrapper stdout END ====
[2025-06-04 10:52:52] 2025-06-04 14:52:51,674 [wrapper] ==== wrapper stderr END ====
[2025-06-04 10:52:52]  *** Error codes and diagnostics ***
[2025-06-04 10:52:52]     "exeErrorCode": 0,
[2025-06-04 10:52:52]     "exeErrorDiag": "",
[2025-06-04 10:52:52]     "pilotErrorCode": 0,
[2025-06-04 10:52:52]     "pilotErrorDiag": "",
[2025-06-04 10:52:52]  *** Listing of results directory ***
[2025-06-04 10:52:52] total 386120
[2025-06-04 10:52:52] -rw-r--r-- 1 boincer umatlas    495897 Jun  4 03:34 pilot3.tar.gz
[2025-06-04 10:52:52] -rwx------ 1 boincer umatlas     37140 Jun  4 03:46 runpilot2-wrapper.sh
[2025-06-04 10:52:52] -rw-r--r-- 1 boincer umatlas      5111 Jun  4 03:46 queuedata.json
[2025-06-04 10:52:52] -rw-r--r-- 1 boincer umatlas       100 Jun  4 09:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 10:52:52] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 09:47 run_atlas
[2025-06-04 10:52:52] -rw-r--r-- 1 boincer umatlas       105 Jun  4 09:47 job.xml
[2025-06-04 10:52:52] -rw-r--r-- 2 boincer umatlas 216647304 Jun  4 09:47 EVNT.45006593._000283.pool.root.1
[2025-06-04 10:52:52] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 09:47 start_atlas.sh
[2025-06-04 10:52:52] drwxrwx--x 2 boincer umatlas      4096 Jun  4 09:47 shared
[2025-06-04 10:52:52] -rw-r--r-- 2 boincer umatlas    508884 Jun  4 09:47 input.tar.gz
[2025-06-04 10:52:52] -rw-r--r-- 1 boincer umatlas         0 Jun  4 09:47 boinc_lockfile
[2025-06-04 10:52:52] -rw-r--r-- 1 boincer umatlas      2522 Jun  4 09:47 pandaJob.out
[2025-06-04 10:52:52] -rw------- 1 boincer umatlas    986819 Jun  4 09:47 agis_schedconf.cvmfs.json
[2025-06-04 10:52:52] -rw------- 1 boincer umatlas   1598969 Jun  4 09:47 agis_ddmendpoints.agis.ALL.json
[2025-06-04 10:52:52] drwx------ 4 boincer umatlas      4096 Jun  4 09:47 pilot3
[2025-06-04 10:52:52] -rw-r--r-- 1 boincer umatlas      6388 Jun  4 10:45 init_data.xml
[2025-06-04 10:52:52] -rw------- 1 boincer umatlas 173492274 Jun  4 10:51 HITS.45006595._055418.pool.root.1
[2025-06-04 10:52:52] -rw-r--r-- 1 boincer umatlas       529 Jun  4 10:52 boinc_task_state.xml
[2025-06-04 10:52:52] -rw------- 1 boincer umatlas      1037 Jun  4 10:52 memory_monitor_summary.json
[2025-06-04 10:52:52] -rw------- 1 boincer umatlas    310838 Jun  4 10:52 log.45006595._055418.job.log.tgz.1
[2025-06-04 10:52:52] -rw------- 1 boincer umatlas      7699 Jun  4 10:52 heartbeat.json
[2025-06-04 10:52:52] -rw------- 1 boincer umatlas        95 Jun  4 10:52 pilot_heartbeat.json
[2025-06-04 10:52:52] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 10:52 boinc_mmap_file
[2025-06-04 10:52:52] -rw-r--r-- 1 boincer umatlas        27 Jun  4 10:52 wrapper_checkpoint.txt
[2025-06-04 10:52:52] -rw------- 1 boincer umatlas      4549 Jun  4 10:52 pilotlog.txt
[2025-06-04 10:52:52] -rw------- 1 boincer umatlas    394917 Jun  4 10:52 log.45006595._055418.job.log.1
[2025-06-04 10:52:52] -rw------- 1 boincer umatlas       357 Jun  4 10:52 output.list
[2025-06-04 10:52:52] -rw-r--r-- 1 boincer umatlas       620 Jun  4 10:52 runtime_log
[2025-06-04 10:52:52] -rw------- 1 boincer umatlas    727040 Jun  4 10:52 result.tar.gz
[2025-06-04 10:52:52] -rw-r--r-- 1 boincer umatlas      8659 Jun  4 10:52 runtime_log.err
[2025-06-04 10:52:52] -rw------- 1 boincer umatlas       655 Jun  4 10:52 GOTKDmH0xg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOjnKDm9oVqnn.diag
[2025-06-04 10:52:52] -rw-r--r-- 1 boincer umatlas     21479 Jun  4 10:52 stderr.txt
[2025-06-04 10:52:52] HITS file was successfully produced:
[2025-06-04 10:52:52] -rw------- 1 boincer umatlas 173492274 Jun  4 10:51 shared/HITS.pool.root.1
[2025-06-04 10:52:52]  *** Contents of shared directory: ***
[2025-06-04 10:52:52] total 382236
[2025-06-04 10:52:52] -rw-r--r-- 2 boincer umatlas 216647304 Jun  4 09:47 ATLAS.root_0
[2025-06-04 10:52:52] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 09:47 start_atlas.sh
[2025-06-04 10:52:52] -rw-r--r-- 2 boincer umatlas    508884 Jun  4 09:47 input.tar.gz
[2025-06-04 10:52:52] -rw------- 1 boincer umatlas 173492274 Jun  4 10:51 HITS.pool.root.1
[2025-06-04 10:52:52] -rw------- 1 boincer umatlas    727040 Jun  4 10:52 result.tar.gz
10:52:54 (39314): run_atlas exited; CPU time 26993.004743
10:52:54 (39314): called boinc_finish(0)

</stderr_txt>
]]>

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