Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:44:40 (526239): wrapper (7.7.26015): starting
09:44:40 (526239): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 09:44:40] Arguments: --nthreads 8
[2025-06-04 09:44:40] Threads: 8
[2025-06-04 09:44:40] Checking for CVMFS
[2025-06-04 09:44:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 09:44:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 09:44:40] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 09:44:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 09:44:40] 2.12.6.0 912492 23375 440804 146781 1 432 28931671 40960001 11425 16776704 0 112319027 99.720 81553767 26933 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 09:44:40] CVMFS is ok
[2025-06-04 09:44:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 09:44:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 09:44:40] Further information can be found at the LHC@home message board.
[2025-06-04 09:44:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 09:44:40] Checking for apptainer binary...
[2025-06-04 09:44:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 09:44:40] Running /usr/bin/apptainer --version
[2025-06-04 09:44:40] apptainer version 1.4.1-1.el9
[2025-06-04 09:44:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 09:44:41] c7-10-12.aglt2.org
[2025-06-04 09:44:41] apptainer works
[2025-06-04 09:44:41] Set ATHENA_PROC_NUMBER=8
[2025-06-04 09:44:41] Set ATHENA_CORE_NUMBER=8
[2025-06-04 09:44:41] Starting ATLAS job with PandaID=6679612154
[2025-06-04 09:44:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 10:45:51]  *** The last 200 lines of the pilot log: ***
[2025-06-04 10:45:51]  lfn=log.45006595._056517.job.log.tgz.1
[2025-06-04 10:45:51]  mtime=0
[2025-06-04 10:45:51]  protocol_id=None
[2025-06-04 10:45:51]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 10:45:51]  replicas=None
[2025-06-04 10:45:51]  scope=mc23_13p6TeV
[2025-06-04 10:45:51]  status=None
[2025-06-04 10:45:51]  status_code=0
[2025-06-04 10:45:51]  storage_token=
[2025-06-04 10:45:51]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6679612154/log.45006595._056517.job.log.tgz.1
[2025-06-04 10:45:51]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b2/2f/log.45006595._056517.job.log.tgz.1
[2025-06-04 10:45:51]  workdir=None
[2025-06-04 10:45:51] ]
[2025-06-04 10:45:51] 2025-06-04 14:45:29,057 | INFO     | transferring file log.45006595._056517.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6679612154/log.45006595._056517.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 10:45:51] 2025-06-04 14:45:29,057 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6679612154/log.45006595._056517.job.log.tgz.1 /tmp/boinchome/slots/1/log.45006595._056517.job
[2025-06-04 10:45:51] 2025-06-04 14:45:29,073 | INFO     | adding to output.list: log.45006595._056517.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b2/2f/log.45006595._056517.job.log.tg
[2025-06-04 10:45:51] 2025-06-04 14:45:29,074 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 10:45:51] 2025-06-04 14:45:29,074 | INFO     | summary of transferred files:
[2025-06-04 10:45:51] 2025-06-04 14:45:29,074 | INFO     |  -- lfn=log.45006595._056517.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 10:45:51] 2025-06-04 14:45:29,074 | INFO     | stage-out finished correctly
[2025-06-04 10:45:51] 2025-06-04 14:45:30,662 | INFO     | PID=529845 has CPU usage=7.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-04 10:45:51] 2025-06-04 14:45:30,662 | INFO     | .. there are 21 such processes running
[2025-06-04 10:45:51] 2025-06-04 14:45:31,057 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 10:45:51] 2025-06-04 14:45:31,209 | WARNING  | process 538851 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 10:45:51] 2025-06-04 14:45:31,209 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6679612154/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 10:45:51] 2025-06-04 14:45:31,514 | INFO     | number of running child processes to parent process 538851: 1
[2025-06-04 10:45:51] 2025-06-04 14:45:31,514 | INFO     | maximum number of monitored processes: 6
[2025-06-04 10:45:51] 2025-06-04 14:45:33,806 | INFO     | job 6679612154 has state=finished
[2025-06-04 10:45:51] 2025-06-04 14:45:33,807 | INFO     | preparing for final server update for job 6679612154 in state='finished'
[2025-06-04 10:45:51] 2025-06-04 14:45:33,807 | INFO     | this job has now completed (state=finished)
[2025-06-04 10:45:51] 2025-06-04 14:45:33,807 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 10:45:51] 2025-06-04 14:45:33,807 | INFO     | log transfer has been attempted: DONE
[2025-06-04 10:45:51] 2025-06-04 14:45:33,807 | INFO     | job 6679612154 has finished - writing final server update
[2025-06-04 10:45:51] 2025-06-04 14:45:33,807 | INFO     | total number of processed events: 400 (read)
[2025-06-04 10:45:51] 2025-06-04 14:45:33,824 | INFO     | executing command: lscpu
[2025-06-04 10:45:51] 2025-06-04 14:45:33,895 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 10:45:51] 2025-06-04 14:45:34,016 | INFO     | monitor loop #271: job 0:6679612154 is in state 'finished'
[2025-06-04 10:45:51] 2025-06-04 14:45:34,016 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 10:45:51] 2025-06-04 14:45:36,519 | INFO     | monitor loop #272: job 0:6679612154 is in state 'finished'
[2025-06-04 10:45:51] 2025-06-04 14:45:36,519 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 10:45:51] 2025-06-04 14:45:37,412 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 10:45:51] 2025-06-04 14:45:37,413 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6679612154/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 10:45:51] 2025-06-04 14:45:37,414 | INFO     | extracted standard info from prmon json
[2025-06-04 10:45:51] 2025-06-04 14:45:37,414 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 10:45:51] 2025-06-04 14:45:37,414 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 10:45:51] 2025-06-04 14:45:37,414 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 10:45:51] 2025-06-04 14:45:37,414 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 10:45:51] 2025-06-04 14:45:37,416 | INFO     | fitting pss+swap vs Time
[2025-06-04 10:45:51] 2025-06-04 14:45:37,416 | INFO     | sum of square deviations: 46147842.0
[2025-06-04 10:45:51] 2025-06-04 14:45:37,416 | INFO     | sum of deviations: 2489674618.0
[2025-06-04 10:45:51] 2025-06-04 14:45:37,416 | INFO     | mean x: 1749046607.0
[2025-06-04 10:45:51] 2025-06-04 14:45:37,416 | INFO     | mean y: 2347537.3584905663
[2025-06-04 10:45:51] 2025-06-04 14:45:37,416 | INFO     | -- intersect: -94358661654.51057
[2025-06-04 10:45:51] 2025-06-04 14:45:37,416 | INFO     | intersect: -94358661654.51057
[2025-06-04 10:45:51] 2025-06-04 14:45:37,417 | INFO     | chi2: 0.6851105093298625
[2025-06-04 10:45:51] 2025-06-04 14:45:37,417 | INFO     | -- intersect: -94358661654.51057
[2025-06-04 10:45:51] 2025-06-04 14:45:37,417 | INFO     | current memory leak: 53.95 B/s (using 53 data points, chi2=0.69)
[2025-06-04 10:45:51] 2025-06-04 14:45:37,417 | INFO     | ..............................
[2025-06-04 10:45:51] 2025-06-04 14:45:37,417 | INFO     | . Timing measurements:
[2025-06-04 10:45:51] 2025-06-04 14:45:37,417 | INFO     | . get job = 0 s
[2025-06-04 10:45:51] 2025-06-04 14:45:37,417 | INFO     | . initial setup = 2 s
[2025-06-04 10:45:51] 2025-06-04 14:45:37,417 | INFO     | . payload setup = 5 s
[2025-06-04 10:45:51] 2025-06-04 14:45:37,418 | INFO     | . stage-in = 0 s
[2025-06-04 10:45:51] 2025-06-04 14:45:37,418 | INFO     | . payload execution = 3614 s
[2025-06-04 10:45:51] 2025-06-04 14:45:37,418 | INFO     | . stage-out = 0 s
[2025-06-04 10:45:51] 2025-06-04 14:45:37,418 | INFO     | . log creation = 0 s
[2025-06-04 10:45:51] 2025-06-04 14:45:37,418 | INFO     | ..............................
[2025-06-04 10:45:51] 2025-06-04 14:45:37,473 | INFO     | 
[2025-06-04 10:45:51] 2025-06-04 14:45:37,473 | INFO     | job summary report
[2025-06-04 10:45:51] 2025-06-04 14:45:37,473 | INFO     | --------------------------------------------------
[2025-06-04 10:45:51] 2025-06-04 14:45:37,473 | INFO     | PanDA job id: 6679612154
[2025-06-04 10:45:51] 2025-06-04 14:45:37,473 | INFO     | task id: 45006595
[2025-06-04 10:45:51] 2025-06-04 14:45:37,473 | INFO     | errors: (none)
[2025-06-04 10:45:51] 2025-06-04 14:45:37,473 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 10:45:51] 2025-06-04 14:45:37,473 | INFO     | pilot state: finished 
[2025-06-04 10:45:51] 2025-06-04 14:45:37,474 | INFO     | transexitcode: 0
[2025-06-04 10:45:51] 2025-06-04 14:45:37,474 | INFO     | exeerrorcode: 0
[2025-06-04 10:45:51] 2025-06-04 14:45:37,474 | INFO     | exeerrordiag: 
[2025-06-04 10:45:51] 2025-06-04 14:45:37,474 | INFO     | exitcode: 0
[2025-06-04 10:45:51] 2025-06-04 14:45:37,474 | INFO     | exitmsg: OK
[2025-06-04 10:45:51] 2025-06-04 14:45:37,474 | INFO     | cpuconsumptiontime: 23438 s
[2025-06-04 10:45:51] 2025-06-04 14:45:37,474 | INFO     | nevents: 400
[2025-06-04 10:45:51] 2025-06-04 14:45:37,474 | INFO     | neventsw: 0
[2025-06-04 10:45:51] 2025-06-04 14:45:37,474 | INFO     | pid: 538851
[2025-06-04 10:45:51] 2025-06-04 14:45:37,474 | INFO     | pgrp: 538851
[2025-06-04 10:45:51] 2025-06-04 14:45:37,474 | INFO     | corecount: 8
[2025-06-04 10:45:51] 2025-06-04 14:45:37,475 | INFO     | event service: False
[2025-06-04 10:45:51] 2025-06-04 14:45:37,475 | INFO     | sizes: {0: 2397121, 1: 2397320, 5: 2397526, 11: 2397582, 3623: 2423292, 3624: 2432416, 3626: 2432416, 3632: 2432586}
[2025-06-04 10:45:51] 2025-06-04 14:45:37,475 | INFO     | --------------------------------------------------
[2025-06-04 10:45:51] 2025-06-04 14:45:37,475 | INFO     | 
[2025-06-04 10:45:51] 2025-06-04 14:45:37,475 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-04 10:45:51] 2025-06-04 14:45:37,495 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 10:45:51] 2025-06-04 14:45:37,496 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 10:45:51] 2025-06-04 14:45:37,496 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 10:45:51] 2025-06-04 14:45:37,496 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 10:45:51] 2025-06-04 14:45:37,496 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 10:45:51] 2025-06-04 14:45:37,496 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 10:45:51] 2025-06-04 14:45:37,496 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 10:45:51] 2025-06-04 14:45:37,496 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 10:45:51] 2025-06-04 14:45:37,496 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 10:45:51] 2025-06-04 14:45:37,496 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 10:45:51] 2025-06-04 14:45:37,496 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 10:45:51] 2025-06-04 14:45:37,496 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 10:45:51] 2025-06-04 14:45:37,496 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 10:45:51] 2025-06-04 14:45:37,496 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 10:45:51] 2025-06-04 14:45:37,496 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 10:45:51] 2025-06-04 14:45:37,496 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 10:45:51] 2025-06-04 14:45:37,497 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 10:45:51] 2025-06-04 14:45:37,497 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 10:45:51] 2025-06-04 14:45:37,497 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 10:45:51] 2025-06-04 14:45:37,497 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 10:45:51] 2025-06-04 14:45:37,497 | INFO     | job 6679612154 has completed (purged errors)
[2025-06-04 10:45:51] 2025-06-04 14:45:37,497 | INFO     | overall cleanup function is called
[2025-06-04 10:45:51] 2025-06-04 14:45:38,505 | INFO     | --- collectZombieJob: --- 10, [538851]
[2025-06-04 10:45:51] 2025-06-04 14:45:38,505 | INFO     | zombie collector waiting for pid 538851
[2025-06-04 10:45:51] 2025-06-04 14:45:38,505 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 10:45:51] 2025-06-04 14:45:38,506 | INFO     | collected zombie processes
[2025-06-04 10:45:51] 2025-06-04 14:45:38,506 | INFO     | will attempt to kill all subprocesses of pid=538851
[2025-06-04 10:45:51] 2025-06-04 14:45:38,751 | INFO     | process IDs to be killed: [538851] (in reverse order)
[2025-06-04 10:45:51] 2025-06-04 14:45:38,846 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 10:45:51] 2025-06-04 14:45:38,847 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 10:45:51] 2025-06-04 14:45:38,860 | INFO     | did not find any defunct processes belonging to 538851
[2025-06-04 10:45:51] 2025-06-04 14:45:38,875 | INFO     | did not find any defunct processes belonging to 538851
[2025-06-04 10:45:51] 2025-06-04 14:45:38,875 | INFO     | ready for new job
[2025-06-04 10:45:51] 2025-06-04 14:45:38,875 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 10:45:51] 2025-06-04 14:45:38,877 | INFO     | **************************************
[2025-06-04 10:45:51] 2025-06-04 14:45:38,878 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 10:45:51] 2025-06-04 14:45:38,878 | INFO     | **************************************
[2025-06-04 10:45:51] 2025-06-04 14:45:38,878 | INFO     | 
[2025-06-04 10:45:51] 2025-06-04 14:45:38,893 | INFO     | architecture information:
[2025-06-04 10:45:51] 2025-06-04 14:45:38,894 | INFO     | executing command: cat /etc/os-release
[2025-06-04 10:45:51] 2025-06-04 14:45:38,909 | INFO     | cat /etc/os-release:
[2025-06-04 10:45:51] NAME="CentOS Linux"
[2025-06-04 10:45:51] VERSION="7 (Core)"
[2025-06-04 10:45:51] ID="centos"
[2025-06-04 10:45:51] ID_LIKE="rhel fedora"
[2025-06-04 10:45:51] VERSION_ID="7"
[2025-06-04 10:45:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 10:45:51] ANSI_COLOR="0;31"
[2025-06-04 10:45:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 10:45:51] HOME_URL="https://www.centos.org/"
[2025-06-04 10:45:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 10:45:51] 
[2025-06-04 10:45:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 10:45:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 10:45:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 10:45:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 10:45:51] 
[2025-06-04 10:45:51] 2025-06-04 14:45:38,909 | INFO     | **************************************
[2025-06-04 10:45:51] 2025-06-04 14:45:39,410 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-04 10:45:51] 2025-06-04 14:45:39,424 | INFO     | sufficient remaining disk space (85973794816 B)
[2025-06-04 10:45:51] 2025-06-04 14:45:39,425 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 10:45:51] 2025-06-04 14:45:39,425 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 10:45:51] 2025-06-04 14:45:39,425 | INFO     | update_server=False
[2025-06-04 10:45:51] 2025-06-04 14:45:39,425 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 10:45:51] 2025-06-04 14:45:39,425 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:45:51] 2025-06-04 14:45:39,425 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 10:45:51] 2025-06-04 14:45:39,426 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 10:45:51] 2025-06-04 14:45:39,426 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 10:45:51] 2025-06-04 14:45:39,426 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 10:45:51] 2025-06-04 14:45:39,642 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 10:45:51] 2025-06-04 14:45:39,911 | INFO     | all data control threads have been joined
[2025-06-04 10:45:51] 2025-06-04 14:45:40,027 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:45:51] 2025-06-04 14:45:40,027 | INFO     | aborting loop
[2025-06-04 10:45:51] 2025-06-04 14:45:40,430 | INFO     | [job] retrieve thread has finished
[2025-06-04 10:45:51] 2025-06-04 14:45:40,431 | INFO     | [job] queue monitor thread has finished
[2025-06-04 10:45:51] 2025-06-04 14:45:40,498 | INFO     | all payload control threads have been joined
[2025-06-04 10:45:51] 2025-06-04 14:45:40,800 | INFO     | all job control threads have been joined
[2025-06-04 10:45:51] 2025-06-04 14:45:40,811 | INFO     | [payload] validate_post thread has finished
[2025-06-04 10:45:51] 2025-06-04 14:45:40,916 | INFO     | [data] control thread has finished
[2025-06-04 10:45:51] 2025-06-04 14:45:41,032 | INFO     | [job] job monitor thread has finished
[2025-06-04 10:45:51] 2025-06-04 14:45:41,266 | INFO     | [payload] failed_post thread has finished
[2025-06-04 10:45:51] 2025-06-04 14:45:41,348 | INFO     | [job] validate thread has finished
[2025-06-04 10:45:51] 2025-06-04 14:45:41,352 | INFO     | [data] copytool_in thread has finished
[2025-06-04 10:45:51] 2025-06-04 14:45:41,484 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 10:45:51] 2025-06-04 14:45:41,503 | INFO     | [payload] control thread has finished
[2025-06-04 10:45:51] 2025-06-04 14:45:41,565 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 10:45:51] 2025-06-04 14:45:41,620 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 10:45:51] 2025-06-04 14:45:41,644 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 10:45:51] 2025-06-04 14:45:41,647 | INFO     | [data] copytool_out thread has finished
[2025-06-04 10:45:51] 2025-06-04 14:45:41,731 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 10:45:51] 2025-06-04 14:45:41,805 | INFO     | [job] control thread has finished
[2025-06-04 10:45:51] 2025-06-04 14:45:45,625 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 10:45:51] 2025-06-04 14:45:46,426 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140036366444352)>', '<ExcThread(monitor, started 140035521242880)>']
[2025-06-04 10:45:51] 2025-06-04 14:45:46,458 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 10:45:51] 2025-06-04 14:45:46,460 | INFO     | [monitor] control thread has ended
[2025-06-04 10:45:51] 2025-06-04 14:45:51,430 | INFO     | all workflow threads have been joined
[2025-06-04 10:45:51] 2025-06-04 14:45:51,430 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 10:45:51] 2025-06-04 14:45:51,430 | INFO     | traces error code: 0
[2025-06-04 10:45:51] 2025-06-04 14:45:51,430 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 10:45:51] 2025-06-04 14:45:51,515 [wrapper] ==== pilot stdout END ====
[2025-06-04 10:45:51] 2025-06-04 14:45:51,518 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 10:45:51] 2025-06-04 14:45:51,520 [wrapper] pilotpid: 529845
[2025-06-04 10:45:51] 2025-06-04 14:45:51,522 [wrapper] Pilot exit status: 0
[2025-06-04 10:45:51] 2025-06-04 14:45:51,532 [wrapper] pandaids: 6679612154
[2025-06-04 10:45:51] 2025-06-04 14:45:51,599 [wrapper] cleanup supervisor_pilot  816788 529846
[2025-06-04 10:45:51] 2025-06-04 14:45:51,602 [wrapper] Test setup, not cleaning
[2025-06-04 10:45:51] 2025-06-04 14:45:51,604 [wrapper] apfmon messages muted
[2025-06-04 10:45:51] 2025-06-04 14:45:51,606 [wrapper] ==== wrapper stdout END ====
[2025-06-04 10:45:51] 2025-06-04 14:45:51,609 [wrapper] ==== wrapper stderr END ====
[2025-06-04 10:45:51]  *** Error codes and diagnostics ***
[2025-06-04 10:45:51]     "exeErrorCode": 0,
[2025-06-04 10:45:51]     "exeErrorDiag": "",
[2025-06-04 10:45:51]     "pilotErrorCode": 0,
[2025-06-04 10:45:51]     "pilotErrorDiag": "",
[2025-06-04 10:45:51]  *** Listing of results directory ***
[2025-06-04 10:45:51] total 386912
[2025-06-04 10:45:51] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 06:07 pilot3.tar.gz
[2025-06-04 10:45:51] -rwx------. 1 boincer umatlas     37140 Jun  4 06:10 runpilot2-wrapper.sh
[2025-06-04 10:45:51] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 06:10 queuedata.json
[2025-06-04 10:45:51] -rw-r--r--. 1 boincer umatlas       100 Jun  4 09:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 10:45:51] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 09:44 run_atlas
[2025-06-04 10:45:51] -rw-r--r--. 1 boincer umatlas       105 Jun  4 09:44 job.xml
[2025-06-04 10:45:51] -rw-r--r--. 2 boincer umatlas 212969750 Jun  4 09:44 EVNT.45006593._001858.pool.root.1
[2025-06-04 10:45:51] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 09:44 start_atlas.sh
[2025-06-04 10:45:51] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 09:44 shared
[2025-06-04 10:45:51] -rw-r--r--. 2 boincer umatlas    508882 Jun  4 09:44 input.tar.gz
[2025-06-04 10:45:51] -rw-r--r--. 1 boincer umatlas         0 Jun  4 09:44 boinc_lockfile
[2025-06-04 10:45:51] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 09:44 pandaJob.out
[2025-06-04 10:45:51] -rw-------. 1 boincer umatlas    986819 Jun  4 09:44 agis_schedconf.cvmfs.json
[2025-06-04 10:45:51] -rw-------. 1 boincer umatlas   1598969 Jun  4 09:44 agis_ddmendpoints.agis.ALL.json
[2025-06-04 10:45:51] drwx------. 4 boincer umatlas      4096 Jun  4 09:44 pilot3
[2025-06-04 10:45:51] -rw-r--r--. 1 boincer umatlas      6897 Jun  4 10:36 init_data.xml
[2025-06-04 10:45:51] -rw-------. 1 boincer umatlas        95 Jun  4 10:45 pilot_heartbeat.json
[2025-06-04 10:45:51] -rw-------. 1 boincer umatlas 178038416 Jun  4 10:45 HITS.45006595._056517.pool.root.1
[2025-06-04 10:45:51] -rw-r--r--. 1 boincer umatlas       529 Jun  4 10:45 boinc_task_state.xml
[2025-06-04 10:45:51] -rw-------. 1 boincer umatlas      1021 Jun  4 10:45 memory_monitor_summary.json
[2025-06-04 10:45:51] -rw-------. 1 boincer umatlas    304868 Jun  4 10:45 log.45006595._056517.job.log.tgz.1
[2025-06-04 10:45:51] -rw-------. 1 boincer umatlas      7683 Jun  4 10:45 heartbeat.json
[2025-06-04 10:45:51] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 10:45 boinc_mmap_file
[2025-06-04 10:45:51] -rw-r--r--. 1 boincer umatlas        27 Jun  4 10:45 wrapper_checkpoint.txt
[2025-06-04 10:45:51] -rw-------. 1 boincer umatlas      4476 Jun  4 10:45 pilotlog.txt
[2025-06-04 10:45:51] -rw-------. 1 boincer umatlas    374014 Jun  4 10:45 log.45006595._056517.job.log.1
[2025-06-04 10:45:51] -rw-------. 1 boincer umatlas       357 Jun  4 10:45 output.list
[2025-06-04 10:45:51] -rw-r--r--. 1 boincer umatlas       620 Jun  4 10:45 runtime_log
[2025-06-04 10:45:51] -rw-------. 1 boincer umatlas    696320 Jun  4 10:45 result.tar.gz
[2025-06-04 10:45:51] -rw-r--r--. 1 boincer umatlas      8659 Jun  4 10:45 runtime_log.err
[2025-06-04 10:45:51] -rw-------. 1 boincer umatlas       651 Jun  4 10:45 2QhMDmDG0g7n9Rq4apOajLDm4fhM0noT9bVof3QYDmE2aKDmTSBoQm.diag
[2025-06-04 10:45:51] -rw-r--r--. 1 boincer umatlas     21695 Jun  4 10:45 stderr.txt
[2025-06-04 10:45:51] HITS file was successfully produced:
[2025-06-04 10:45:51] -rw-------. 1 boincer umatlas 178038416 Jun  4 10:45 shared/HITS.pool.root.1
[2025-06-04 10:45:51]  *** Contents of shared directory: ***
[2025-06-04 10:45:51] total 383052
[2025-06-04 10:45:51] -rw-r--r--. 2 boincer umatlas 212969750 Jun  4 09:44 ATLAS.root_0
[2025-06-04 10:45:51] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 09:44 start_atlas.sh
[2025-06-04 10:45:51] -rw-r--r--. 2 boincer umatlas    508882 Jun  4 09:44 input.tar.gz
[2025-06-04 10:45:51] -rw-------. 1 boincer umatlas 178038416 Jun  4 10:45 HITS.pool.root.1
[2025-06-04 10:45:51] -rw-------. 1 boincer umatlas    696320 Jun  4 10:45 result.tar.gz
10:45:52 (526239): run_atlas exited; CPU time 23476.355983
10:45:52 (526239): called boinc_finish(0)

</stderr_txt>
]]>

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