Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:28:23 (348): wrapper (7.7.26015): starting
00:28:23 (348): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 00:28:23] Arguments: --nthreads 8
[2025-06-05 00:28:23] Threads: 8
[2025-06-05 00:28:23] Checking for CVMFS
[2025-06-05 00:28:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 00:28:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 00:28:24] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 00:28:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 00:28:25] 2.11.2.0 16765 33823 91812 146797 0 201 16436441 25165824 3135 130560 0 16389520 99.778 20109561 2100 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 00:28:25] CVMFS is ok
[2025-06-05 00:28:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 00:28:25] Checking for apptainer binary...
[2025-06-05 00:28:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 00:28:25] Running /usr/bin/apptainer --version
[2025-06-05 00:28:25] apptainer version 1.3.2-1.el7
[2025-06-05 00:28:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 00:28:35] cg-vwn404.simple-grid.lan
[2025-06-05 00:28:35] apptainer works
[2025-06-05 00:28:35] Set ATHENA_PROC_NUMBER=8
[2025-06-05 00:28:35] Set ATHENA_CORE_NUMBER=8
[2025-06-05 00:28:36] Starting ATLAS job with PandaID=6679614967
[2025-06-05 00:28:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 06:06:07]  *** The last 200 lines of the pilot log: ***
[2025-06-05 06:06:07] 2025-06-05 03:57:23,223 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 06:06:07] 2025-06-05 03:57:23,223 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 06:06:07] 2025-06-05 03:57:23,230 | INFO     | fitting pss+swap vs Time
[2025-06-05 06:06:07] 2025-06-05 03:57:23,231 | INFO     | sum of square deviations: 9417545878.0
[2025-06-05 06:06:07] 2025-06-05 03:57:23,234 | INFO     | sum of deviations: 81146897060.99998
[2025-06-05 06:06:07] 2025-06-05 03:57:23,234 | INFO     | mean x: 1749086286.5
[2025-06-05 06:06:07] 2025-06-05 03:57:23,234 | INFO     | mean y: 2466263.358974359
[2025-06-05 06:06:07] 2025-06-05 03:57:23,234 | INFO     | -- intersect: -15068649575.10875
[2025-06-05 06:06:07] 2025-06-05 03:57:23,234 | INFO     | intersect: -15068649575.10875
[2025-06-05 06:06:07] 2025-06-05 03:57:23,235 | INFO     | chi2: 6.251831134781331
[2025-06-05 06:06:07] 2025-06-05 03:57:23,235 | INFO     | sum of square deviations: 8971993338.0
[2025-06-05 06:06:07] 2025-06-05 03:57:23,238 | INFO     | sum of deviations: 101256494025.0
[2025-06-05 06:06:07] 2025-06-05 03:57:23,239 | INFO     | mean x: 1749086134.0
[2025-06-05 06:06:07] 2025-06-05 03:57:23,239 | INFO     | mean y: 2473051.104234528
[2025-06-05 06:06:07] 2025-06-05 03:57:23,239 | INFO     | -- intersect: -19737435685.393017
[2025-06-05 06:06:07] 2025-06-05 03:57:23,239 | INFO     | intersect: -19737435685.393017
[2025-06-05 06:06:07] 2025-06-05 03:57:23,240 | INFO     | chi2: 5.466313589261819
[2025-06-05 06:06:07] 2025-06-05 03:57:23,240 | INFO     | current chi2=5.466313589261819 (change=12.564599532277459 %)
[2025-06-05 06:06:07] 2025-06-05 03:57:23,240 | INFO     | right removable region: 306
[2025-06-05 06:06:07] 2025-06-05 03:57:23,240 | INFO     | sum of square deviations: 8971993338.0
[2025-06-05 06:06:07] 2025-06-05 03:57:23,243 | INFO     | sum of deviations: -25513094816.0
[2025-06-05 06:06:07] 2025-06-05 03:57:23,244 | INFO     | mean x: 1749086439.0
[2025-06-05 06:06:07] 2025-06-05 03:57:23,244 | INFO     | mean y: 2502737.931596091
[2025-06-05 06:06:07] 2025-06-05 03:57:23,244 | INFO     | -- intersect: 4976270158.219753
[2025-06-05 06:06:07] 2025-06-05 03:57:23,244 | INFO     | intersect: 4976270158.219753
[2025-06-05 06:06:07] 2025-06-05 03:57:23,244 | INFO     | chi2: 1.77143358039427
[2025-06-05 06:06:07] 2025-06-05 03:57:23,245 | INFO     | current chi2=1.77143358039427 (change=71.66536423962083 %)
[2025-06-05 06:06:07] 2025-06-05 03:57:23,245 | INFO     | sum of square deviations: 8540720135.5
[2025-06-05 06:06:07] 2025-06-05 03:57:23,248 | INFO     | sum of deviations: -61945656709.0
[2025-06-05 06:06:07] 2025-06-05 03:57:23,248 | INFO     | mean x: 1749086591.5
[2025-06-05 06:06:07] 2025-06-05 03:57:23,248 | INFO     | mean y: 2515541.7350993375
[2025-06-05 06:06:07] 2025-06-05 03:57:23,248 | INFO     | -- intersect: 12688602409.400724
[2025-06-05 06:06:07] 2025-06-05 03:57:23,248 | INFO     | intersect: 12688602409.400724
[2025-06-05 06:06:07] 2025-06-05 03:57:23,249 | INFO     | chi2: 1.0192757595512942
[2025-06-05 06:06:07] 2025-06-05 03:57:23,249 | INFO     | current chi2=1.0192757595512942 (change=42.46040208154839 %)
[2025-06-05 06:06:07] 2025-06-05 03:57:23,250 | INFO     | sum of square deviations: 8123493708.0
[2025-06-05 06:06:07] 2025-06-05 03:57:23,252 | INFO     | sum of deviations: -58937562184.0
[2025-06-05 06:06:07] 2025-06-05 03:57:23,253 | INFO     | mean x: 1749086744.0
[2025-06-05 06:06:07] 2025-06-05 03:57:23,253 | INFO     | mean y: 2514422.878787879
[2025-06-05 06:06:07] 2025-06-05 03:57:23,253 | INFO     | -- intersect: 12692486551.273535
[2025-06-05 06:06:07] 2025-06-05 03:57:23,253 | INFO     | intersect: 12692486551.273535
[2025-06-05 06:06:07] 2025-06-05 03:57:23,253 | INFO     | chi2: 1.0050158031761396
[2025-06-05 06:06:07] 2025-06-05 03:57:23,254 | INFO     | current chi2=1.0050158031761396 (change=1.3990283043160143 %)
[2025-06-05 06:06:07] 2025-06-05 03:57:23,254 | INFO     | left removable region: 30
[2025-06-05 06:06:07] 2025-06-05 03:57:23,254 | INFO     | sum of square deviations: 6519285025.0
[2025-06-05 06:06:07] 2025-06-05 03:57:23,257 | INFO     | sum of deviations: -8804417889.500002
[2025-06-05 06:06:07] 2025-06-05 03:57:23,257 | INFO     | mean x: 1749087018.5
[2025-06-05 06:06:07] 2025-06-05 03:57:23,257 | INFO     | mean y: 2510710.474637681
[2025-06-05 06:06:07] 2025-06-05 03:57:23,257 | INFO     | -- intersect: 2364685853.4418864
[2025-06-05 06:06:07] 2025-06-05 03:57:23,257 | INFO     | intersect: 2364685853.4418864
[2025-06-05 06:06:07] 2025-06-05 03:57:23,258 | INFO     | chi2: 0.07687608835579708
[2025-06-05 06:06:07] 2025-06-05 03:57:23,258 | INFO     | -- intersect: 2364685853.4418864
[2025-06-05 06:06:07] 2025-06-05 03:57:23,258 | INFO     | current memory leak: -1.35 B/s (using 276 data points, chi2=0.08)
[2025-06-05 06:06:07] 2025-06-05 03:57:23,259 | INFO     | ..............................
[2025-06-05 06:06:07] 2025-06-05 03:57:23,259 | INFO     | . Timing measurements:
[2025-06-05 06:06:07] 2025-06-05 03:57:23,259 | INFO     | . get job = 0 s
[2025-06-05 06:06:07] 2025-06-05 03:57:23,259 | INFO     | . initial setup = 6 s
[2025-06-05 06:06:07] 2025-06-05 03:57:23,259 | INFO     | . payload setup = 159 s
[2025-06-05 06:06:07] 2025-06-05 03:57:23,260 | INFO     | . stage-in = 0 s
[2025-06-05 06:06:07] 2025-06-05 03:57:23,260 | INFO     | . payload execution = 19168 s
[2025-06-05 06:06:07] 2025-06-05 03:57:23,260 | INFO     | . stage-out = 1 s
[2025-06-05 06:06:07] 2025-06-05 03:57:23,260 | INFO     | . log creation = 0 s
[2025-06-05 06:06:07] 2025-06-05 03:57:23,260 | INFO     | ..............................
[2025-06-05 06:06:07] 2025-06-05 03:57:23,433 | INFO     | 
[2025-06-05 06:06:07] 2025-06-05 03:57:23,433 | INFO     | job summary report
[2025-06-05 06:06:07] 2025-06-05 03:57:23,433 | INFO     | --------------------------------------------------
[2025-06-05 06:06:07] 2025-06-05 03:57:23,433 | INFO     | PanDA job id: 6679614967
[2025-06-05 06:06:07] 2025-06-05 03:57:23,433 | INFO     | task id: 44871837
[2025-06-05 06:06:07] 2025-06-05 03:57:23,433 | INFO     | errors: (none)
[2025-06-05 06:06:07] 2025-06-05 03:57:23,434 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 06:06:07] 2025-06-05 03:57:23,434 | INFO     | pilot state: finished 
[2025-06-05 06:06:07] 2025-06-05 03:57:23,434 | INFO     | transexitcode: 0
[2025-06-05 06:06:07] 2025-06-05 03:57:23,434 | INFO     | exeerrorcode: 0
[2025-06-05 06:06:07] 2025-06-05 03:57:23,434 | INFO     | exeerrordiag: 
[2025-06-05 06:06:07] 2025-06-05 03:57:23,434 | INFO     | exitcode: 0
[2025-06-05 06:06:07] 2025-06-05 03:57:23,434 | INFO     | exitmsg: OK
[2025-06-05 06:06:07] 2025-06-05 03:57:23,434 | INFO     | cpuconsumptiontime: 71237 s
[2025-06-05 06:06:07] 2025-06-05 03:57:23,434 | INFO     | nevents: 400
[2025-06-05 06:06:07] 2025-06-05 03:57:23,434 | INFO     | neventsw: 0
[2025-06-05 06:06:07] 2025-06-05 03:57:23,434 | INFO     | pid: 16295
[2025-06-05 06:06:07] 2025-06-05 03:57:23,434 | INFO     | pgrp: 16295
[2025-06-05 06:06:07] 2025-06-05 03:57:23,435 | INFO     | corecount: 8
[2025-06-05 06:06:07] 2025-06-05 03:57:23,435 | INFO     | event service: False
[2025-06-05 06:06:07] 2025-06-05 03:57:23,435 | INFO     | sizes: {0: 2397170, 1: 2397369, 12: 2397369, 23: 2397397, 33: 2397425, 44: 2397481, 55: 2397637, 66: 2397665, 76: 2397693, 84: 2397955, 87: 2397983, 19331: 2430114
[2025-06-05 06:06:07] 2025-06-05 03:57:23,435 | INFO     | --------------------------------------------------
[2025-06-05 06:06:07] 2025-06-05 03:57:23,435 | INFO     | 
[2025-06-05 06:06:07] 2025-06-05 03:57:23,435 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-05 06:06:07] 2025-06-05 03:57:23,535 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 03:57:23,536 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 03:57:23,537 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 03:57:23,537 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 03:57:23,537 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 03:57:23,538 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 03:57:23,538 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 03:57:23,538 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 03:57:23,539 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 03:57:23,540 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 03:57:23,540 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 03:57:23,541 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 03:57:23,541 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 03:57:23,541 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 03:57:23,541 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 03:57:23,541 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 03:57:23,541 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 03:57:23,542 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 06:06:07] 2025-06-05 03:57:23,542 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 03:57:23,542 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 03:57:23,543 | INFO     | job 6679614967 has completed (purged errors)
[2025-06-05 06:06:07] 2025-06-05 03:57:23,543 | INFO     | overall cleanup function is called
[2025-06-05 06:06:07] 2025-06-05 03:57:24,559 | INFO     | --- collectZombieJob: --- 10, [16295]
[2025-06-05 06:06:07] 2025-06-05 03:57:24,559 | INFO     | zombie collector waiting for pid 16295
[2025-06-05 06:06:07] 2025-06-05 03:57:24,559 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 06:06:07] 2025-06-05 03:57:24,560 | INFO     | collected zombie processes
[2025-06-05 06:06:07] 2025-06-05 03:57:24,560 | INFO     | will attempt to kill all subprocesses of pid=16295
[2025-06-05 06:06:07] 2025-06-05 03:57:24,680 | INFO     | process IDs to be killed: [16295] (in reverse order)
[2025-06-05 06:06:07] 2025-06-05 03:57:24,847 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 06:06:07] 2025-06-05 03:57:24,848 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 06:06:07] 2025-06-05 03:57:24,852 | INFO     | did not find any defunct processes belonging to 16295
[2025-06-05 06:06:07] 2025-06-05 03:57:24,855 | INFO     | did not find any defunct processes belonging to 16295
[2025-06-05 06:06:07] 2025-06-05 03:57:24,855 | INFO     | ready for new job
[2025-06-05 06:06:07] 2025-06-05 03:57:24,855 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 06:06:07] 2025-06-05 03:57:24,858 | INFO     | **************************************
[2025-06-05 06:06:07] 2025-06-05 03:57:24,858 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 06:06:07] 2025-06-05 03:57:24,858 | INFO     | **************************************
[2025-06-05 06:06:07] 2025-06-05 03:57:24,859 | INFO     | 
[2025-06-05 06:06:07] 2025-06-05 03:57:24,859 | INFO     | pilot is running in a VM
[2025-06-05 06:06:07] 2025-06-05 03:57:24,859 | INFO     | architecture information:
[2025-06-05 06:06:07] 2025-06-05 03:57:24,862 | INFO     | executing command: cat /etc/os-release
[2025-06-05 06:06:07] 2025-06-05 03:57:24,888 | INFO     | cat /etc/os-release:
[2025-06-05 06:06:07] NAME="CentOS Linux"
[2025-06-05 06:06:07] VERSION="7 (Core)"
[2025-06-05 06:06:07] ID="centos"
[2025-06-05 06:06:07] ID_LIKE="rhel fedora"
[2025-06-05 06:06:07] VERSION_ID="7"
[2025-06-05 06:06:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 06:06:07] ANSI_COLOR="0;31"
[2025-06-05 06:06:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 06:06:07] HOME_URL="https://www.centos.org/"
[2025-06-05 06:06:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 06:06:07] 
[2025-06-05 06:06:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 06:06:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 06:06:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 06:06:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 06:06:07] 
[2025-06-05 06:06:07] 2025-06-05 03:57:24,889 | INFO     | **************************************
[2025-06-05 06:06:07] 2025-06-05 03:57:25,392 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-05 06:06:07] 2025-06-05 03:57:25,537 | INFO     | sufficient remaining disk space (496800628736 B)
[2025-06-05 06:06:07] 2025-06-05 03:57:25,538 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 06:06:07] 2025-06-05 03:57:25,538 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 06:06:07] 2025-06-05 03:57:25,538 | INFO     | update_server=False
[2025-06-05 06:06:07] 2025-06-05 03:57:25,538 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 06:06:07] 2025-06-05 03:57:25,538 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 06:06:07] 2025-06-05 03:57:25,539 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 06:06:07] 2025-06-05 03:57:25,539 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 06:06:07] 2025-06-05 03:57:25,539 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 06:06:07] 2025-06-05 03:57:25,544 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 06:06:07] 2025-06-05 03:57:25,778 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 06:06:07] 2025-06-05 03:57:25,778 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 06:06:07] 2025-06-05 03:57:25,779 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 06:06:07] 2025-06-05 03:57:25,779 | INFO     | will abort loop
[2025-06-05 06:06:07] 2025-06-05 03:57:25,812 | INFO     | all data control threads have been joined
[2025-06-05 06:06:07] 2025-06-05 03:57:25,883 | INFO     | all job control threads have been joined
[2025-06-05 06:06:07] 2025-06-05 03:57:26,411 | INFO     | all payload control threads have been joined
[2025-06-05 06:06:07] 2025-06-05 03:57:26,544 | INFO     | [job] retrieve thread has finished
[2025-06-05 06:06:07] 2025-06-05 03:57:26,617 | INFO     | [data] copytool_in thread has finished
[2025-06-05 06:06:07] 2025-06-05 03:57:26,670 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 06:06:07] 2025-06-05 03:57:26,785 | INFO     | [job] job monitor thread has finished
[2025-06-05 06:06:07] 2025-06-05 03:57:26,818 | INFO     | [data] control thread has finished
[2025-06-05 06:06:07] 2025-06-05 03:57:26,888 | INFO     | [job] control thread has finished
[2025-06-05 06:06:07] 2025-06-05 03:57:27,417 | INFO     | [payload] control thread has finished
[2025-06-05 06:06:07] 2025-06-05 03:57:27,555 | INFO     | [data] copytool_out thread has finished
[2025-06-05 06:06:07] 2025-06-05 03:57:27,580 | INFO     | [payload] validate_post thread has finished
[2025-06-05 06:06:07] 2025-06-05 03:57:27,787 | INFO     | [job] validate thread has finished
[2025-06-05 06:06:07] 2025-06-05 03:57:27,832 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 06:06:07] 2025-06-05 03:57:27,899 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 06:06:07] 2025-06-05 03:57:27,900 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 06:06:07] 2025-06-05 03:57:27,921 | INFO     | [payload] failed_post thread has finished
[2025-06-05 06:06:07] 2025-06-05 03:57:28,447 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 06:06:07] 2025-06-05 03:57:29,453 | INFO     | [job] queue monitor thread has finished
[2025-06-05 06:06:07] 2025-06-05 03:57:31,841 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 06:06:07] 2025-06-05 03:57:36,242 | INFO     | job.realtimelogging is not enabled
[2025-06-05 06:06:07] 2025-06-05 03:57:37,248 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 06:06:07] 2025-06-05 03:57:38,686 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140188873815872)>', '<ExcThread(monitor, started 140188428773120)>']
[2025-06-05 06:06:07] 2025-06-05 03:57:39,621 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 06:06:07] 2025-06-05 03:57:39,621 | INFO     | [monitor] control thread has ended
[2025-06-05 06:06:07] 2025-06-05 03:57:43,711 | INFO     | all workflow threads have been joined
[2025-06-05 06:06:07] 2025-06-05 03:57:43,711 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 06:06:07] 2025-06-05 03:57:43,712 | INFO     | traces error code: 0
[2025-06-05 06:06:07] 2025-06-05 03:57:43,712 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 06:06:07] 2025-06-05 03:57:44,098 [wrapper] ==== pilot stdout END ====
[2025-06-05 06:06:07] 2025-06-05 03:57:44,190 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 06:06:07] 2025-06-05 03:57:44,247 [wrapper] pilotpid: 5666
[2025-06-05 06:06:07] 2025-06-05 03:57:44,340 [wrapper] Pilot exit status: 0
[2025-06-05 06:06:07] 2025-06-05 03:57:44,659 [wrapper] pandaids: 6679614967
[2025-06-05 06:06:07] 2025-06-05 03:57:45,019 [wrapper] cleanup supervisor_pilot 13140 5667
[2025-06-05 06:06:07] 2025-06-05 03:57:45,067 [wrapper] Test setup, not cleaning
[2025-06-05 06:06:07] 2025-06-05 03:57:45,149 [wrapper] apfmon messages muted
[2025-06-05 06:06:07] 2025-06-05 03:57:45,215 [wrapper] ==== wrapper stdout END ====
[2025-06-05 06:06:07] 2025-06-05 03:57:45,323 [wrapper] ==== wrapper stderr END ====
[2025-06-05 06:06:07]  *** Error codes and diagnostics ***
[2025-06-05 06:06:07]     "exeErrorCode": 0,
[2025-06-05 06:06:07]     "exeErrorDiag": "",
[2025-06-05 06:06:07]     "pilotErrorCode": 0,
[2025-06-05 06:06:07]     "pilotErrorDiag": "",
[2025-06-05 06:06:07]  *** Listing of results directory ***
[2025-06-05 06:06:07] total 415116
[2025-06-05 06:06:07] -rw-r--r--. 1 boinc boinc    495897 Jun  4 12:07 pilot3.tar.gz
[2025-06-05 06:06:07] -rwx------. 1 boinc boinc     37140 Jun  4 12:21 runpilot2-wrapper.sh
[2025-06-05 06:06:07] -rw-r--r--. 1 boinc boinc      5111 Jun  4 12:21 queuedata.json
[2025-06-05 06:06:07] -rw-r--r--. 1 boinc boinc       100 Jun  5 00:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 06:06:07] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 00:28 run_atlas
[2025-06-05 06:06:07] -rw-r--r--. 1 boinc boinc       105 Jun  5 00:28 job.xml
[2025-06-05 06:06:07] -rw-r--r--. 1 boinc boinc      6392 Jun  5 00:28 init_data.xml
[2025-06-05 06:06:07] -rw-r--r--. 2 boinc boinc 226125751 Jun  5 00:28 EVNT.44871834._002393.pool.root.1
[2025-06-05 06:06:07] -rw-r--r--. 2 boinc boinc     15093 Jun  5 00:28 start_atlas.sh
[2025-06-05 06:06:07] drwxrwx--x. 2 boinc boinc        68 Jun  5 00:28 shared
[2025-06-05 06:06:07] -rw-r--r--. 2 boinc boinc    508879 Jun  5 00:28 input.tar.gz
[2025-06-05 06:06:07] -rw-r--r--. 1 boinc boinc         0 Jun  5 00:28 boinc_lockfile
[2025-06-05 06:06:07] -rw-r--r--. 1 boinc boinc      2558 Jun  5 00:28 pandaJob.out
[2025-06-05 06:06:07] -rw-------. 1 boinc boinc    987032 Jun  5 00:31 agis_schedconf.cvmfs.json
[2025-06-05 06:06:07] drwx------. 4 boinc boinc      4096 Jun  5 00:31 pilot3
[2025-06-05 06:06:07] -rw-------. 1 boinc boinc 190933757 Jun  5 05:56 HITS.44871837._102205.pool.root.1
[2025-06-05 06:06:07] -rw-r--r--. 1 boinc boinc       531 Jun  5 05:56 boinc_task_state.xml
[2025-06-05 06:06:07] -rw-------. 1 boinc boinc      1018 Jun  5 05:56 memory_monitor_summary.json
[2025-06-05 06:06:07] -rw-------. 1 boinc boinc   1598969 Jun  5 05:56 agis_ddmendpoints.agis.ALL.json
[2025-06-05 06:06:07] -rw-------. 1 boinc boinc    445106 Jun  5 05:56 log.44871837._102205.job.log.tgz.1
[2025-06-05 06:06:07] -rw-------. 1 boinc boinc      7693 Jun  5 05:57 heartbeat.json
[2025-06-05 06:06:07] -rw-------. 1 boinc boinc        95 Jun  5 05:57 pilot_heartbeat.json
[2025-06-05 06:06:07] -rw-------. 1 boinc boinc      4797 Jun  5 05:57 pilotlog.txt
[2025-06-05 06:06:07] -rw-------. 1 boinc boinc   1650962 Jun  5 05:57 log.44871837._102205.job.log.1
[2025-06-05 06:06:07] -rw-------. 1 boinc boinc       357 Jun  5 05:57 output.list
[2025-06-05 06:06:07] -rw-r--r--. 1 boinc boinc       620 Jun  5 05:57 runtime_log
[2025-06-05 06:06:07] -rw-------. 1 boinc boinc   2119680 Jun  5 05:57 result.tar.gz
[2025-06-05 06:06:07] -rw-------. 1 boinc boinc       656 Jun  5 05:57 zRHNDm9P0g7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmmxnKDmITqEKm.diag
[2025-06-05 06:06:07] -rw-r--r--. 1 boinc boinc      8659 Jun  5 05:57 runtime_log.err
[2025-06-05 06:06:07] -rw-r--r--. 1 boinc boinc      8192 Jun  5 06:06 boinc_mmap_file
[2025-06-05 06:06:07] -rw-r--r--. 1 boinc boinc        28 Jun  5 06:06 wrapper_checkpoint.txt
[2025-06-05 06:06:07] -rw-r--r--. 1 boinc boinc     20515 Jun  5 06:06 stderr.txt
[2025-06-05 06:06:07] HITS file was successfully produced:
[2025-06-05 06:06:07] -rw-------. 1 boinc boinc 190933757 Jun  5 05:56 shared/HITS.pool.root.1
[2025-06-05 06:06:07]  *** Contents of shared directory: ***
[2025-06-05 06:06:07] total 409876
[2025-06-05 06:06:07] -rw-r--r--. 2 boinc boinc 226125751 Jun  5 00:28 ATLAS.root_0
[2025-06-05 06:06:07] -rw-r--r--. 2 boinc boinc     15093 Jun  5 00:28 start_atlas.sh
[2025-06-05 06:06:07] -rw-r--r--. 2 boinc boinc    508879 Jun  5 00:28 input.tar.gz
[2025-06-05 06:06:07] -rw-------. 1 boinc boinc 190933757 Jun  5 05:56 HITS.pool.root.1
[2025-06-05 06:06:07] -rw-------. 1 boinc boinc   2119680 Jun  5 05:57 result.tar.gz
06:06:09 (348): run_atlas exited; CPU time 71513.726383
06:06:09 (348): called boinc_finish(0)

</stderr_txt>
]]>

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