Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:48:28 (972487): wrapper (7.7.26015): starting
10:48:28 (972487): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 10:48:28] Arguments: --nthreads 12
[2025-06-04 10:48:28] Threads: 12
[2025-06-04 10:48:28] Checking for CVMFS
[2025-06-04 10:48:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 10:48:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 10:48:28] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 10:48:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 10:48:29] 2.12.6.0 665990 23443 423008 146783 2 68 30435783 32935937 6173 16776704 1 81869344 99.623 78766537 33878 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 10:48:29] CVMFS is ok
[2025-06-04 10:48:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 10:48:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 10:48:29] Further information can be found at the LHC@home message board.
[2025-06-04 10:48:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 10:48:29] Checking for apptainer binary...
[2025-06-04 10:48:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 10:48:29] Running /usr/bin/apptainer --version
[2025-06-04 10:48:29] apptainer version 1.4.1-1.el9
[2025-06-04 10:48:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 10:48:29] c6-6-39-1.aglt2.org
[2025-06-04 10:48:29] apptainer works
[2025-06-04 10:48:29] Set ATHENA_PROC_NUMBER=12
[2025-06-04 10:48:29] Set ATHENA_CORE_NUMBER=12
[2025-06-04 10:48:29] Starting ATLAS job with PandaID=6678287073
[2025-06-04 10:48:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 11:35:28]  *** The last 200 lines of the pilot log: ***
[2025-06-04 11:35:28]  direct_access_wan=False
[2025-06-04 11:35:28]  domain=
[2025-06-04 11:35:28]  filesize=350281
[2025-06-04 11:35:28]  filetype=log
[2025-06-04 11:35:28]  guid=abb4a8bb-6a65-4348-97c6-a0a9d924980c
[2025-06-04 11:35:28]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 11:35:28]  is_altstaged=None
[2025-06-04 11:35:28]  is_tar=False
[2025-06-04 11:35:28]  lfn=log.45006595._051720.job.log.tgz.1
[2025-06-04 11:35:28]  mtime=0
[2025-06-04 11:35:28]  protocol_id=None
[2025-06-04 11:35:28]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 11:35:28]  replicas=None
[2025-06-04 11:35:28]  scope=mc23_13p6TeV
[2025-06-04 11:35:28]  status=None
[2025-06-04 11:35:28]  status_code=0
[2025-06-04 11:35:28]  storage_token=
[2025-06-04 11:35:28]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6678287073/log.45006595._051720.job.log.tgz.1
[2025-06-04 11:35:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/da/b8/log.45006595._051720.job.log.tgz.1
[2025-06-04 11:35:28]  workdir=None
[2025-06-04 11:35:28] ]
[2025-06-04 11:35:28] 2025-06-04 15:35:12,056 | INFO     | transferring file log.45006595._051720.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6678287073/log.45006595._051720.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 11:35:28] 2025-06-04 15:35:12,056 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6678287073/log.45006595._051720.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._051720.job
[2025-06-04 11:35:28] 2025-06-04 15:35:12,069 | INFO     | adding to output.list: log.45006595._051720.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/da/b8/log.45006595._051720.job.log.tg
[2025-06-04 11:35:28] 2025-06-04 15:35:12,070 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 11:35:28] 2025-06-04 15:35:12,070 | INFO     | summary of transferred files:
[2025-06-04 11:35:28] 2025-06-04 15:35:12,070 | INFO     |  -- lfn=log.45006595._051720.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 11:35:28] 2025-06-04 15:35:12,070 | INFO     | stage-out finished correctly
[2025-06-04 11:35:28] 2025-06-04 15:35:12,151 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 11:35:28] 2025-06-04 15:35:12,241 | INFO     | job 6678287073 has state=finished
[2025-06-04 11:35:28] 2025-06-04 15:35:12,241 | INFO     | preparing for final server update for job 6678287073 in state='finished'
[2025-06-04 11:35:28] 2025-06-04 15:35:12,242 | INFO     | this job has now completed (state=finished)
[2025-06-04 11:35:28] 2025-06-04 15:35:12,242 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 11:35:28] 2025-06-04 15:35:12,242 | INFO     | log transfer has been attempted: DONE
[2025-06-04 11:35:28] 2025-06-04 15:35:12,242 | INFO     | job 6678287073 has finished - writing final server update
[2025-06-04 11:35:28] 2025-06-04 15:35:12,242 | INFO     | total number of processed events: 400 (read)
[2025-06-04 11:35:28] 2025-06-04 15:35:12,257 | INFO     | executing command: lscpu
[2025-06-04 11:35:28] 2025-06-04 15:35:12,321 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 11:35:28] 2025-06-04 15:35:13,311 | INFO     | monitor loop #212: job 0:6678287073 is in state 'finished'
[2025-06-04 11:35:28] 2025-06-04 15:35:13,312 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 11:35:28] 2025-06-04 15:35:15,003 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 11:35:28] 2025-06-04 15:35:15,003 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678287073/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 11:35:28] 2025-06-04 15:35:15,004 | INFO     | extracted standard info from prmon json
[2025-06-04 11:35:28] 2025-06-04 15:35:15,004 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 11:35:28] 2025-06-04 15:35:15,004 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 11:35:28] 2025-06-04 15:35:15,005 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 11:35:28] 2025-06-04 15:35:15,005 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 11:35:28] 2025-06-04 15:35:15,006 | INFO     | fitting pss+swap vs Time
[2025-06-04 11:35:28] 2025-06-04 15:35:15,007 | INFO     | sum of square deviations: 18381740.0
[2025-06-04 11:35:28] 2025-06-04 15:35:15,007 | INFO     | sum of deviations: 1310243521.9999998
[2025-06-04 11:35:28] 2025-06-04 15:35:15,007 | INFO     | mean x: 1749050003.0
[2025-06-04 11:35:28] 2025-06-04 15:35:15,007 | INFO     | mean y: 2486427.512820513
[2025-06-04 11:35:28] 2025-06-04 15:35:15,007 | INFO     | -- intersect: -124669140746.23843
[2025-06-04 11:35:28] 2025-06-04 15:35:15,007 | INFO     | intersect: -124669140746.23843
[2025-06-04 11:35:28] 2025-06-04 15:35:15,007 | INFO     | chi2: 0.8631865864551279
[2025-06-04 11:35:28] 2025-06-04 15:35:15,008 | INFO     | -- intersect: -124669140746.23843
[2025-06-04 11:35:28] 2025-06-04 15:35:15,008 | INFO     | current memory leak: 71.28 B/s (using 39 data points, chi2=0.86)
[2025-06-04 11:35:28] 2025-06-04 15:35:15,008 | INFO     | ..............................
[2025-06-04 11:35:28] 2025-06-04 15:35:15,008 | INFO     | . Timing measurements:
[2025-06-04 11:35:28] 2025-06-04 15:35:15,008 | INFO     | . get job = 0 s
[2025-06-04 11:35:28] 2025-06-04 15:35:15,008 | INFO     | . initial setup = 3 s
[2025-06-04 11:35:28] 2025-06-04 15:35:15,008 | INFO     | . payload setup = 4 s
[2025-06-04 11:35:28] 2025-06-04 15:35:15,009 | INFO     | . stage-in = 0 s
[2025-06-04 11:35:28] 2025-06-04 15:35:15,009 | INFO     | . payload execution = 2770 s
[2025-06-04 11:35:28] 2025-06-04 15:35:15,009 | INFO     | . stage-out = 0 s
[2025-06-04 11:35:28] 2025-06-04 15:35:15,009 | INFO     | . log creation = 0 s
[2025-06-04 11:35:28] 2025-06-04 15:35:15,009 | INFO     | ..............................
[2025-06-04 11:35:28] 2025-06-04 15:35:15,482 | INFO     | 
[2025-06-04 11:35:28] 2025-06-04 15:35:15,482 | INFO     | job summary report
[2025-06-04 11:35:28] 2025-06-04 15:35:15,482 | INFO     | --------------------------------------------------
[2025-06-04 11:35:28] 2025-06-04 15:35:15,482 | INFO     | PanDA job id: 6678287073
[2025-06-04 11:35:28] 2025-06-04 15:35:15,482 | INFO     | task id: 45006595
[2025-06-04 11:35:28] 2025-06-04 15:35:15,482 | INFO     | errors: (none)
[2025-06-04 11:35:28] 2025-06-04 15:35:15,482 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 11:35:28] 2025-06-04 15:35:15,483 | INFO     | pilot state: finished 
[2025-06-04 11:35:28] 2025-06-04 15:35:15,483 | INFO     | transexitcode: 0
[2025-06-04 11:35:28] 2025-06-04 15:35:15,483 | INFO     | exeerrorcode: 0
[2025-06-04 11:35:28] 2025-06-04 15:35:15,483 | INFO     | exeerrordiag: 
[2025-06-04 11:35:28] 2025-06-04 15:35:15,483 | INFO     | exitcode: 0
[2025-06-04 11:35:28] 2025-06-04 15:35:15,483 | INFO     | exitmsg: OK
[2025-06-04 11:35:28] 2025-06-04 15:35:15,483 | INFO     | cpuconsumptiontime: 26003 s
[2025-06-04 11:35:28] 2025-06-04 15:35:15,483 | INFO     | nevents: 400
[2025-06-04 11:35:28] 2025-06-04 15:35:15,483 | INFO     | neventsw: 0
[2025-06-04 11:35:28] 2025-06-04 15:35:15,483 | INFO     | pid: 983147
[2025-06-04 11:35:28] 2025-06-04 15:35:15,483 | INFO     | pgrp: 983147
[2025-06-04 11:35:28] 2025-06-04 15:35:15,483 | INFO     | corecount: 12
[2025-06-04 11:35:28] 2025-06-04 15:35:15,483 | INFO     | event service: False
[2025-06-04 11:35:28] 2025-06-04 15:35:15,483 | INFO     | sizes: {0: 2397342, 4: 2397548, 11: 2397576, 2777: 2422872, 2778: 2422871, 2780: 2432052, 2783: 2432166}
[2025-06-04 11:35:28] 2025-06-04 15:35:15,483 | INFO     | --------------------------------------------------
[2025-06-04 11:35:28] 2025-06-04 15:35:15,483 | INFO     | 
[2025-06-04 11:35:28] 2025-06-04 15:35:15,484 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 11:35:28] 2025-06-04 15:35:15,498 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 11:35:28] 2025-06-04 15:35:15,499 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 11:35:28] 2025-06-04 15:35:15,499 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 11:35:28] 2025-06-04 15:35:15,499 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 11:35:28] 2025-06-04 15:35:15,499 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 11:35:28] 2025-06-04 15:35:15,499 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 11:35:28] 2025-06-04 15:35:15,499 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 11:35:28] 2025-06-04 15:35:15,499 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 11:35:28] 2025-06-04 15:35:15,499 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 11:35:28] 2025-06-04 15:35:15,499 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 11:35:28] 2025-06-04 15:35:15,499 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 11:35:28] 2025-06-04 15:35:15,499 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 11:35:28] 2025-06-04 15:35:15,499 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 11:35:28] 2025-06-04 15:35:15,499 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 11:35:28] 2025-06-04 15:35:15,500 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 11:35:28] 2025-06-04 15:35:15,500 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 11:35:28] 2025-06-04 15:35:15,500 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 11:35:28] 2025-06-04 15:35:15,500 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 11:35:28] 2025-06-04 15:35:15,500 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 11:35:28] 2025-06-04 15:35:15,500 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 11:35:28] 2025-06-04 15:35:15,500 | INFO     | job 6678287073 has completed (purged errors)
[2025-06-04 11:35:28] 2025-06-04 15:35:15,500 | INFO     | overall cleanup function is called
[2025-06-04 11:35:28] 2025-06-04 15:35:16,508 | INFO     | --- collectZombieJob: --- 10, [983147]
[2025-06-04 11:35:28] 2025-06-04 15:35:16,508 | INFO     | zombie collector waiting for pid 983147
[2025-06-04 11:35:28] 2025-06-04 15:35:16,509 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 11:35:28] 2025-06-04 15:35:16,509 | INFO     | collected zombie processes
[2025-06-04 11:35:28] 2025-06-04 15:35:16,509 | INFO     | will attempt to kill all subprocesses of pid=983147
[2025-06-04 11:35:28] 2025-06-04 15:35:16,640 | INFO     | process IDs to be killed: [983147] (in reverse order)
[2025-06-04 11:35:28] 2025-06-04 15:35:16,693 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 11:35:28] 2025-06-04 15:35:16,693 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 11:35:28] 2025-06-04 15:35:16,699 | INFO     | did not find any defunct processes belonging to 983147
[2025-06-04 11:35:28] 2025-06-04 15:35:16,704 | INFO     | did not find any defunct processes belonging to 983147
[2025-06-04 11:35:28] 2025-06-04 15:35:16,705 | INFO     | ready for new job
[2025-06-04 11:35:28] 2025-06-04 15:35:16,705 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 11:35:28] 2025-06-04 15:35:16,706 | INFO     | **************************************
[2025-06-04 11:35:28] 2025-06-04 15:35:16,706 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 11:35:28] 2025-06-04 15:35:16,706 | INFO     | **************************************
[2025-06-04 11:35:28] 2025-06-04 15:35:16,706 | INFO     | 
[2025-06-04 11:35:28] 2025-06-04 15:35:16,720 | INFO     | architecture information:
[2025-06-04 11:35:28] 2025-06-04 15:35:16,720 | INFO     | executing command: cat /etc/os-release
[2025-06-04 11:35:28] 2025-06-04 15:35:16,731 | INFO     | cat /etc/os-release:
[2025-06-04 11:35:28] NAME="CentOS Linux"
[2025-06-04 11:35:28] VERSION="7 (Core)"
[2025-06-04 11:35:28] ID="centos"
[2025-06-04 11:35:28] ID_LIKE="rhel fedora"
[2025-06-04 11:35:28] VERSION_ID="7"
[2025-06-04 11:35:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 11:35:28] ANSI_COLOR="0;31"
[2025-06-04 11:35:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 11:35:28] HOME_URL="https://www.centos.org/"
[2025-06-04 11:35:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 11:35:28] 
[2025-06-04 11:35:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 11:35:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 11:35:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 11:35:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 11:35:28] 
[2025-06-04 11:35:28] 2025-06-04 15:35:16,732 | INFO     | **************************************
[2025-06-04 11:35:28] 2025-06-04 15:35:17,235 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 11:35:28] 2025-06-04 15:35:17,249 | INFO     | sufficient remaining disk space (76586942464 B)
[2025-06-04 11:35:28] 2025-06-04 15:35:17,249 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 11:35:28] 2025-06-04 15:35:17,250 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 11:35:28] 2025-06-04 15:35:17,250 | INFO     | update_server=False
[2025-06-04 11:35:28] 2025-06-04 15:35:17,250 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 11:35:28] 2025-06-04 15:35:17,250 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 11:35:28] 2025-06-04 15:35:17,250 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:35:28] 2025-06-04 15:35:17,250 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 11:35:28] 2025-06-04 15:35:17,251 | INFO     | aborting loop
[2025-06-04 11:35:28] 2025-06-04 15:35:17,251 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 11:35:28] 2025-06-04 15:35:17,251 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 11:35:28] 2025-06-04 15:35:17,615 | INFO     | all data control threads have been joined
[2025-06-04 11:35:28] 2025-06-04 15:35:17,653 | INFO     | all payload control threads have been joined
[2025-06-04 11:35:28] 2025-06-04 15:35:17,660 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 11:35:28] 2025-06-04 15:35:17,962 | INFO     | all job control threads have been joined
[2025-06-04 11:35:28] 2025-06-04 15:35:18,247 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 11:35:28] 2025-06-04 15:35:18,252 | INFO     | [job] job monitor thread has finished
[2025-06-04 11:35:28] 2025-06-04 15:35:18,255 | INFO     | [job] retrieve thread has finished
[2025-06-04 11:35:28] 2025-06-04 15:35:18,323 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 11:35:28] 2025-06-04 15:35:18,489 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 11:35:28] 2025-06-04 15:35:18,621 | INFO     | [data] control thread has finished
[2025-06-04 11:35:28] 2025-06-04 15:35:18,646 | INFO     | [payload] failed_post thread has finished
[2025-06-04 11:35:28] 2025-06-04 15:35:18,658 | INFO     | [payload] control thread has finished
[2025-06-04 11:35:28] 2025-06-04 15:35:18,818 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 11:35:28] 2025-06-04 15:35:18,851 | INFO     | [data] copytool_in thread has finished
[2025-06-04 11:35:28] 2025-06-04 15:35:18,967 | INFO     | [job] control thread has finished
[2025-06-04 11:35:28] 2025-06-04 15:35:19,232 | INFO     | [payload] validate_post thread has finished
[2025-06-04 11:35:28] 2025-06-04 15:35:19,509 | INFO     | [job] validate thread has finished
[2025-06-04 11:35:28] 2025-06-04 15:35:19,534 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 11:35:28] 2025-06-04 15:35:19,665 | INFO     | [data] copytool_out thread has finished
[2025-06-04 11:35:28] 2025-06-04 15:35:20,106 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:35:28] 2025-06-04 15:35:21,112 | INFO     | [job] queue monitor thread has finished
[2025-06-04 11:35:28] 2025-06-04 15:35:22,252 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 11:35:28] 2025-06-04 15:35:23,001 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140617880082240)>', '<ExcThread(monitor, started 140617078265600)>']
[2025-06-04 11:35:28] 2025-06-04 15:35:23,277 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 11:35:28] 2025-06-04 15:35:23,277 | INFO     | [monitor] control thread has ended
[2025-06-04 11:35:28] 2025-06-04 15:35:28,026 | INFO     | all workflow threads have been joined
[2025-06-04 11:35:28] 2025-06-04 15:35:28,027 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 11:35:28] 2025-06-04 15:35:28,027 | INFO     | traces error code: 0
[2025-06-04 11:35:28] 2025-06-04 15:35:28,027 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 11:35:28] 2025-06-04 15:35:28,166 [wrapper] ==== pilot stdout END ====
[2025-06-04 11:35:28] 2025-06-04 15:35:28,169 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 11:35:28] 2025-06-04 15:35:28,171 [wrapper] pilotpid: 976143
[2025-06-04 11:35:28] 2025-06-04 15:35:28,174 [wrapper] Pilot exit status: 0
[2025-06-04 11:35:28] 2025-06-04 15:35:28,182 [wrapper] pandaids: 6678287073
[2025-06-04 11:35:28] 2025-06-04 15:35:28,217 [wrapper] cleanup supervisor_pilot 1061787 976144
[2025-06-04 11:35:28] 2025-06-04 15:35:28,220 [wrapper] Test setup, not cleaning
[2025-06-04 11:35:28] 2025-06-04 15:35:28,222 [wrapper] apfmon messages muted
[2025-06-04 11:35:28] 2025-06-04 15:35:28,224 [wrapper] ==== wrapper stdout END ====
[2025-06-04 11:35:28] 2025-06-04 15:35:28,227 [wrapper] ==== wrapper stderr END ====
[2025-06-04 11:35:28]  *** Error codes and diagnostics ***
[2025-06-04 11:35:28]     "exeErrorCode": 0,
[2025-06-04 11:35:28]     "exeErrorDiag": "",
[2025-06-04 11:35:28]     "pilotErrorCode": 0,
[2025-06-04 11:35:28]     "pilotErrorDiag": "",
[2025-06-04 11:35:28]  *** Listing of results directory ***
[2025-06-04 11:35:28] total 390500
[2025-06-04 11:35:28] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 23:29 pilot3.tar.gz
[2025-06-04 11:35:28] -rwx------. 1 boincer umatlas     37140 Jun  3 23:42 runpilot2-wrapper.sh
[2025-06-04 11:35:28] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 23:42 queuedata.json
[2025-06-04 11:35:28] -rw-r--r--. 1 boincer umatlas       100 Jun  4 10:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 11:35:28] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 10:48 run_atlas
[2025-06-04 11:35:28] -rw-r--r--. 1 boincer umatlas       105 Jun  4 10:48 job.xml
[2025-06-04 11:35:28] -rw-r--r--. 2 boincer umatlas 216954449 Jun  4 10:48 EVNT.45006593._002072.pool.root.1
[2025-06-04 11:35:28] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 10:48 start_atlas.sh
[2025-06-04 11:35:28] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 10:48 shared
[2025-06-04 11:35:28] -rw-r--r--. 2 boincer umatlas    508878 Jun  4 10:48 input.tar.gz
[2025-06-04 11:35:28] -rw-r--r--. 1 boincer umatlas         0 Jun  4 10:48 boinc_lockfile
[2025-06-04 11:35:28] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 10:48 pandaJob.out
[2025-06-04 11:35:28] -rw-------. 1 boincer umatlas    987207 Jun  4 10:48 agis_schedconf.cvmfs.json
[2025-06-04 11:35:28] -rw-------. 1 boincer umatlas   1598969 Jun  4 10:48 agis_ddmendpoints.agis.ALL.json
[2025-06-04 11:35:28] drwx------. 4 boincer umatlas      4096 Jun  4 10:48 pilot3
[2025-06-04 11:35:28] -rw-r--r--. 1 boincer umatlas      6842 Jun  4 11:30 init_data.xml
[2025-06-04 11:35:28] -rw-------. 1 boincer umatlas 177787297 Jun  4 11:34 HITS.45006595._051720.pool.root.1
[2025-06-04 11:35:28] -rw-r--r--. 1 boincer umatlas       529 Jun  4 11:34 boinc_task_state.xml
[2025-06-04 11:35:28] -rw-------. 1 boincer umatlas      1026 Jun  4 11:35 memory_monitor_summary.json
[2025-06-04 11:35:28] -rw-------. 1 boincer umatlas    350281 Jun  4 11:35 log.45006595._051720.job.log.tgz.1
[2025-06-04 11:35:28] -rw-------. 1 boincer umatlas      7709 Jun  4 11:35 heartbeat.json
[2025-06-04 11:35:28] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 11:35 boinc_mmap_file
[2025-06-04 11:35:28] -rw-r--r--. 1 boincer umatlas        27 Jun  4 11:35 wrapper_checkpoint.txt
[2025-06-04 11:35:28] -rw-------. 1 boincer umatlas        95 Jun  4 11:35 pilot_heartbeat.json
[2025-06-04 11:35:28] -rw-------. 1 boincer umatlas      4476 Jun  4 11:35 pilotlog.txt
[2025-06-04 11:35:28] -rw-------. 1 boincer umatlas    297822 Jun  4 11:35 log.45006595._051720.job.log.1
[2025-06-04 11:35:28] -rw-------. 1 boincer umatlas       357 Jun  4 11:35 output.list
[2025-06-04 11:35:28] -rw-r--r--. 1 boincer umatlas       620 Jun  4 11:35 runtime_log
[2025-06-04 11:35:28] -rw-------. 1 boincer umatlas    665600 Jun  4 11:35 result.tar.gz
[2025-06-04 11:35:28] -rw-r--r--. 1 boincer umatlas      8666 Jun  4 11:35 runtime_log.err
[2025-06-04 11:35:28] -rw-------. 1 boincer umatlas       651 Jun  4 11:35 QJjLDmCCug7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmo4mKDmeJwucm.diag
[2025-06-04 11:35:28] -rw-r--r--. 1 boincer umatlas     20970 Jun  4 11:35 stderr.txt
[2025-06-04 11:35:28] HITS file was successfully produced:
[2025-06-04 11:35:28] -rw-------. 1 boincer umatlas 177787297 Jun  4 11:34 shared/HITS.pool.root.1
[2025-06-04 11:35:28]  *** Contents of shared directory: ***
[2025-06-04 11:35:28] total 386668
[2025-06-04 11:35:28] -rw-r--r--. 2 boincer umatlas 216954449 Jun  4 10:48 ATLAS.root_0
[2025-06-04 11:35:28] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 10:48 start_atlas.sh
[2025-06-04 11:35:28] -rw-r--r--. 2 boincer umatlas    508878 Jun  4 10:48 input.tar.gz
[2025-06-04 11:35:28] -rw-------. 1 boincer umatlas 177787297 Jun  4 11:34 HITS.pool.root.1
[2025-06-04 11:35:28] -rw-------. 1 boincer umatlas    665600 Jun  4 11:35 result.tar.gz
11:35:30 (972487): run_atlas exited; CPU time 26049.262644
11:35:30 (972487): called boinc_finish(0)

</stderr_txt>
]]>

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