Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:04:22 (15537): wrapper (7.7.26015): starting
00:04:22 (15537): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 00:04:22] Arguments: --nthreads 8
[2025-06-05 00:04:22] Threads: 8
[2025-06-05 00:04:22] Checking for CVMFS
[2025-06-05 00:04:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 00:04:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 00:04:23] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 00:04:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 00:04:24] 2.11.2.0 7198 33802 93656 146795 2 59 12606460 25165825 3135 130560 0 17883156 99.803 19504451 2170 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 00:04:24] CVMFS is ok
[2025-06-05 00:04:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 00:04:24] Checking for apptainer binary...
[2025-06-05 00:04:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 00:04:24] Running /usr/bin/apptainer --version
[2025-06-05 00:04:24] apptainer version 1.3.2-1.el7
[2025-06-05 00:04:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 00:04:33] cg-vwn468.simple-grid.lan
[2025-06-05 00:04:33] apptainer works
[2025-06-05 00:04:33] Set ATHENA_PROC_NUMBER=8
[2025-06-05 00:04:33] Set ATHENA_CORE_NUMBER=8
[2025-06-05 00:04:33] Starting ATLAS job with PandaID=6678287079
[2025-06-05 00:04:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 05:11:18]  *** The last 200 lines of the pilot log: ***
[2025-06-05 05:11:18] 2025-06-05 01:42:06,831 | INFO     | extracted standard info from prmon json
[2025-06-05 05:11:18] 2025-06-05 01:42:06,831 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 05:11:18] 2025-06-05 01:42:06,831 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 05:11:18] 2025-06-05 01:42:06,831 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 05:11:18] 2025-06-05 01:42:06,831 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 05:11:18] 2025-06-05 01:42:06,836 | INFO     | fitting pss+swap vs Time
[2025-06-05 05:11:18] 2025-06-05 01:42:06,836 | INFO     | sum of square deviations: 2555770710.5
[2025-06-05 05:11:18] 2025-06-05 01:42:06,838 | INFO     | sum of deviations: 30107990606.499985
[2025-06-05 05:11:18] 2025-06-05 01:42:06,838 | INFO     | mean x: 1749081488.5
[2025-06-05 05:11:18] 2025-06-05 01:42:06,838 | INFO     | mean y: 2471057.094059406
[2025-06-05 05:11:18] 2025-06-05 01:42:06,838 | INFO     | -- intersect: -20602401206.841766
[2025-06-05 05:11:18] 2025-06-05 01:42:06,838 | INFO     | intersect: -20602401206.841766
[2025-06-05 05:11:18] 2025-06-05 01:42:06,838 | INFO     | chi2: 6.824847013464899
[2025-06-05 05:11:18] 2025-06-05 01:42:06,839 | INFO     | sum of square deviations: 2370641658.0
[2025-06-05 05:11:18] 2025-06-05 01:42:06,840 | INFO     | sum of deviations: 42927213470.999985
[2025-06-05 05:11:18] 2025-06-05 01:42:06,840 | INFO     | mean x: 1749081336.0
[2025-06-05 05:11:18] 2025-06-05 01:42:06,841 | INFO     | mean y: 2481397.9746192894
[2025-06-05 05:11:18] 2025-06-05 01:42:06,841 | INFO     | -- intersect: -31669613638.08327
[2025-06-05 05:11:18] 2025-06-05 01:42:06,841 | INFO     | intersect: -31669613638.08327
[2025-06-05 05:11:18] 2025-06-05 01:42:06,841 | INFO     | chi2: 6.125431769483617
[2025-06-05 05:11:18] 2025-06-05 01:42:06,841 | INFO     | current chi2=6.125431769483617 (change=10.248072119439293 %)
[2025-06-05 05:11:18] 2025-06-05 01:42:06,841 | INFO     | right removable region: 196
[2025-06-05 05:11:18] 2025-06-05 01:42:06,842 | INFO     | sum of square deviations: 2370641658.0
[2025-06-05 05:11:18] 2025-06-05 01:42:06,843 | INFO     | sum of deviations: -40190046053.99996
[2025-06-05 05:11:18] 2025-06-05 01:42:06,843 | INFO     | mean x: 1749081641.0
[2025-06-05 05:11:18] 2025-06-05 01:42:06,843 | INFO     | mean y: 2528904.340101523
[2025-06-05 05:11:18] 2025-06-05 01:42:06,844 | INFO     | -- intersect: 29655121680.972996
[2025-06-05 05:11:18] 2025-06-05 01:42:06,844 | INFO     | intersect: 29655121680.972996
[2025-06-05 05:11:18] 2025-06-05 01:42:06,844 | INFO     | chi2: 1.9737967349516679
[2025-06-05 05:11:18] 2025-06-05 01:42:06,844 | INFO     | current chi2=1.9737967349516679 (change=71.07925304321813 %)
[2025-06-05 05:11:18] 2025-06-05 01:42:06,844 | INFO     | sum of square deviations: 2194675568.0
[2025-06-05 05:11:18] 2025-06-05 01:42:06,846 | INFO     | sum of deviations: -65515985732.999985
[2025-06-05 05:11:18] 2025-06-05 01:42:06,846 | INFO     | mean x: 1749081793.5
[2025-06-05 05:11:18] 2025-06-05 01:42:06,846 | INFO     | mean y: 2550622.3020833335
[2025-06-05 05:11:18] 2025-06-05 01:42:06,846 | INFO     | -- intersect: 52216563253.43738
[2025-06-05 05:11:18] 2025-06-05 01:42:06,846 | INFO     | intersect: 52216563253.43738
[2025-06-05 05:11:18] 2025-06-05 01:42:06,847 | INFO     | chi2: 0.99385908721579
[2025-06-05 05:11:18] 2025-06-05 01:42:06,847 | INFO     | current chi2=0.99385908721579 (change=49.64734363895244 %)
[2025-06-05 05:11:18] 2025-06-05 01:42:06,847 | INFO     | sum of square deviations: 2027639878.0
[2025-06-05 05:11:18] 2025-06-05 01:42:06,848 | INFO     | sum of deviations: -62466666066.000015
[2025-06-05 05:11:18] 2025-06-05 01:42:06,848 | INFO     | mean x: 1749081946.0
[2025-06-05 05:11:18] 2025-06-05 01:42:06,849 | INFO     | mean y: 2547801.8449197863
[2025-06-05 05:11:18] 2025-06-05 01:42:06,849 | INFO     | -- intersect: 53887519698.64023
[2025-06-05 05:11:18] 2025-06-05 01:42:06,849 | INFO     | intersect: 53887519698.64023
[2025-06-05 05:11:18] 2025-06-05 01:42:06,849 | INFO     | chi2: 0.9834042523055398
[2025-06-05 05:11:18] 2025-06-05 01:42:06,849 | INFO     | current chi2=0.9834042523055398 (change=1.0519433835976117 %)
[2025-06-05 05:11:18] 2025-06-05 01:42:06,849 | INFO     | left removable region: 30
[2025-06-05 05:11:18] 2025-06-05 01:42:06,850 | INFO     | sum of square deviations: 1418361477.5
[2025-06-05 05:11:18] 2025-06-05 01:42:06,850 | INFO     | sum of deviations: -31627724537.500004
[2025-06-05 05:11:18] 2025-06-05 01:42:06,851 | INFO     | mean x: 1749082220.5
[2025-06-05 05:11:18] 2025-06-05 01:42:06,851 | INFO     | mean y: 2543474.0903614457
[2025-06-05 05:11:18] 2025-06-05 01:42:06,851 | INFO     | -- intersect: 39004935699.88517
[2025-06-05 05:11:18] 2025-06-05 01:42:06,851 | INFO     | intersect: 39004935699.88517
[2025-06-05 05:11:18] 2025-06-05 01:42:06,851 | INFO     | chi2: 0.17124052478440757
[2025-06-05 05:11:18] 2025-06-05 01:42:06,851 | INFO     | -- intersect: 39004935699.88517
[2025-06-05 05:11:18] 2025-06-05 01:42:06,852 | INFO     | current memory leak: -22.30 B/s (using 166 data points, chi2=0.17)
[2025-06-05 05:11:18] 2025-06-05 01:42:06,852 | INFO     | ..............................
[2025-06-05 05:11:18] 2025-06-05 01:42:06,852 | INFO     | . Timing measurements:
[2025-06-05 05:11:18] 2025-06-05 01:42:06,853 | INFO     | . get job = 0 s
[2025-06-05 05:11:18] 2025-06-05 01:42:06,853 | INFO     | . initial setup = 7 s
[2025-06-05 05:11:18] 2025-06-05 01:42:06,853 | INFO     | . payload setup = 160 s
[2025-06-05 05:11:18] 2025-06-05 01:42:06,853 | INFO     | . stage-in = 0 s
[2025-06-05 05:11:18] 2025-06-05 01:42:06,853 | INFO     | . payload execution = 12425 s
[2025-06-05 05:11:18] 2025-06-05 01:42:06,853 | INFO     | . stage-out = 3 s
[2025-06-05 05:11:18] 2025-06-05 01:42:06,853 | INFO     | . log creation = 1 s
[2025-06-05 05:11:18] 2025-06-05 01:42:06,853 | INFO     | ..............................
[2025-06-05 05:11:18] 2025-06-05 01:42:06,977 | INFO     | 
[2025-06-05 05:11:18] 2025-06-05 01:42:06,977 | INFO     | job summary report
[2025-06-05 05:11:18] 2025-06-05 01:42:06,977 | INFO     | --------------------------------------------------
[2025-06-05 05:11:18] 2025-06-05 01:42:06,977 | INFO     | PanDA job id: 6678287079
[2025-06-05 05:11:18] 2025-06-05 01:42:06,977 | INFO     | task id: 45006595
[2025-06-05 05:11:18] 2025-06-05 01:42:06,977 | INFO     | errors: (none)
[2025-06-05 05:11:18] 2025-06-05 01:42:06,978 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 05:11:18] 2025-06-05 01:42:06,978 | INFO     | pilot state: finished 
[2025-06-05 05:11:18] 2025-06-05 01:42:06,978 | INFO     | transexitcode: 0
[2025-06-05 05:11:18] 2025-06-05 01:42:06,978 | INFO     | exeerrorcode: 0
[2025-06-05 05:11:18] 2025-06-05 01:42:06,978 | INFO     | exeerrordiag: 
[2025-06-05 05:11:18] 2025-06-05 01:42:06,978 | INFO     | exitcode: 0
[2025-06-05 05:11:18] 2025-06-05 01:42:06,978 | INFO     | exitmsg: OK
[2025-06-05 05:11:18] 2025-06-05 01:42:06,978 | INFO     | cpuconsumptiontime: 44940 s
[2025-06-05 05:11:18] 2025-06-05 01:42:06,978 | INFO     | nevents: 400
[2025-06-05 05:11:18] 2025-06-05 01:42:06,978 | INFO     | neventsw: 0
[2025-06-05 05:11:18] 2025-06-05 01:42:06,978 | INFO     | pid: 1026
[2025-06-05 05:11:18] 2025-06-05 01:42:06,978 | INFO     | pgrp: 1026
[2025-06-05 05:11:18] 2025-06-05 01:42:06,978 | INFO     | corecount: 8
[2025-06-05 05:11:18] 2025-06-05 01:42:06,979 | INFO     | event service: False
[2025-06-05 05:11:18] 2025-06-05 01:42:06,979 | INFO     | sizes: {0: 2396514, 1: 2397199, 2: 2397370, 12: 2397398, 23: 2397426, 34: 2397454, 44: 2397610, 55: 2397638, 66: 2397666, 77: 2397694, 87: 2397750, 92: 2398264, 98
[2025-06-05 05:11:18] 2025-06-05 01:42:06,979 | INFO     | --------------------------------------------------
[2025-06-05 05:11:18] 2025-06-05 01:42:06,979 | INFO     | 
[2025-06-05 05:11:18] 2025-06-05 01:42:06,979 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-06-05 05:11:18] 2025-06-05 01:42:07,422 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 05:11:18] 2025-06-05 01:42:07,422 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 05:11:18] 2025-06-05 01:42:07,422 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 05:11:18] 2025-06-05 01:42:07,422 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 05:11:18] 2025-06-05 01:42:07,422 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 05:11:18] 2025-06-05 01:42:07,423 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 05:11:18] 2025-06-05 01:42:07,423 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 05:11:18] 2025-06-05 01:42:07,423 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 05:11:18] 2025-06-05 01:42:07,423 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 05:11:18] 2025-06-05 01:42:07,423 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 05:11:18] 2025-06-05 01:42:07,423 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 05:11:18] 2025-06-05 01:42:07,423 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 05:11:18] 2025-06-05 01:42:07,423 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 05:11:18] 2025-06-05 01:42:07,423 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 05:11:18] 2025-06-05 01:42:07,423 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 05:11:18] 2025-06-05 01:42:07,423 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 05:11:18] 2025-06-05 01:42:07,423 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 05:11:18] 2025-06-05 01:42:07,424 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 05:11:18] 2025-06-05 01:42:07,424 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 05:11:18] 2025-06-05 01:42:07,424 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 05:11:18] 2025-06-05 01:42:07,424 | INFO     | job 6678287079 has completed (purged errors)
[2025-06-05 05:11:18] 2025-06-05 01:42:07,424 | INFO     | overall cleanup function is called
[2025-06-05 05:11:18] 2025-06-05 01:42:08,433 | INFO     | --- collectZombieJob: --- 10, [1026]
[2025-06-05 05:11:18] 2025-06-05 01:42:08,434 | INFO     | zombie collector waiting for pid 1026
[2025-06-05 05:11:18] 2025-06-05 01:42:08,434 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 05:11:18] 2025-06-05 01:42:08,435 | INFO     | collected zombie processes
[2025-06-05 05:11:18] 2025-06-05 01:42:08,435 | INFO     | will attempt to kill all subprocesses of pid=1026
[2025-06-05 05:11:18] 2025-06-05 01:42:08,711 | INFO     | process IDs to be killed: [1026] (in reverse order)
[2025-06-05 05:11:18] 2025-06-05 01:42:09,460 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 05:11:18] 2025-06-05 01:42:09,461 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 05:11:18] 2025-06-05 01:42:09,464 | INFO     | did not find any defunct processes belonging to 1026
[2025-06-05 05:11:18] 2025-06-05 01:42:09,467 | INFO     | did not find any defunct processes belonging to 1026
[2025-06-05 05:11:18] 2025-06-05 01:42:09,467 | INFO     | ready for new job
[2025-06-05 05:11:18] 2025-06-05 01:42:09,468 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 05:11:18] 2025-06-05 01:42:09,470 | INFO     | **************************************
[2025-06-05 05:11:18] 2025-06-05 01:42:09,470 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 05:11:18] 2025-06-05 01:42:09,470 | INFO     | **************************************
[2025-06-05 05:11:18] 2025-06-05 01:42:09,470 | INFO     | 
[2025-06-05 05:11:18] 2025-06-05 01:42:09,471 | INFO     | pilot is running in a VM
[2025-06-05 05:11:18] 2025-06-05 01:42:09,471 | INFO     | architecture information:
[2025-06-05 05:11:18] 2025-06-05 01:42:09,473 | INFO     | executing command: cat /etc/os-release
[2025-06-05 05:11:18] 2025-06-05 01:42:09,667 | INFO     | cat /etc/os-release:
[2025-06-05 05:11:18] NAME="CentOS Linux"
[2025-06-05 05:11:18] VERSION="7 (Core)"
[2025-06-05 05:11:18] ID="centos"
[2025-06-05 05:11:18] ID_LIKE="rhel fedora"
[2025-06-05 05:11:18] VERSION_ID="7"
[2025-06-05 05:11:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 05:11:18] ANSI_COLOR="0;31"
[2025-06-05 05:11:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 05:11:18] HOME_URL="https://www.centos.org/"
[2025-06-05 05:11:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 05:11:18] 
[2025-06-05 05:11:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 05:11:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 05:11:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 05:11:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 05:11:18] 
[2025-06-05 05:11:18] 2025-06-05 01:42:09,668 | INFO     | **************************************
[2025-06-05 05:11:18] 2025-06-05 01:42:10,171 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-06-05 05:11:18] 2025-06-05 01:42:10,275 | INFO     | sufficient remaining disk space (497539874816 B)
[2025-06-05 05:11:18] 2025-06-05 01:42:10,276 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 05:11:18] 2025-06-05 01:42:10,276 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 05:11:18] 2025-06-05 01:42:10,276 | INFO     | update_server=False
[2025-06-05 05:11:18] 2025-06-05 01:42:10,276 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 05:11:18] 2025-06-05 01:42:10,278 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 05:11:18] 2025-06-05 01:42:10,278 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 05:11:18] 2025-06-05 01:42:10,278 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 05:11:18] 2025-06-05 01:42:10,278 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 05:11:18] 2025-06-05 01:42:10,279 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 05:11:18] 2025-06-05 01:42:10,279 | INFO     | aborting loop
[2025-06-05 05:11:18] 2025-06-05 01:42:10,936 | INFO     | all data control threads have been joined
[2025-06-05 05:11:18] 2025-06-05 01:42:11,111 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 05:11:18] 2025-06-05 01:42:11,281 | INFO     | [job] retrieve thread has finished
[2025-06-05 05:11:18] 2025-06-05 01:42:11,287 | INFO     | [job] job monitor thread has finished
[2025-06-05 05:11:18] 2025-06-05 01:42:11,304 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 05:11:18] 2025-06-05 01:42:11,329 | INFO     | all job control threads have been joined
[2025-06-05 05:11:18] 2025-06-05 01:42:11,602 | INFO     | all payload control threads have been joined
[2025-06-05 05:11:18] 2025-06-05 01:42:11,706 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 05:11:18] 2025-06-05 01:42:11,742 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 05:11:18] 2025-06-05 01:42:11,788 | INFO     | [payload] validate_post thread has finished
[2025-06-05 05:11:18] 2025-06-05 01:42:11,838 | INFO     | [job] validate thread has finished
[2025-06-05 05:11:18] 2025-06-05 01:42:11,910 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 05:11:18] 2025-06-05 01:42:11,944 | INFO     | [data] control thread has finished
[2025-06-05 05:11:18] 2025-06-05 01:42:11,996 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 05:11:18] 2025-06-05 01:42:12,092 | INFO     | [data] copytool_in thread has finished
[2025-06-05 05:11:18] 2025-06-05 01:42:12,335 | INFO     | [job] control thread has finished
[2025-06-05 05:11:18] 2025-06-05 01:42:12,546 | INFO     | [payload] failed_post thread has finished
[2025-06-05 05:11:18] 2025-06-05 01:42:12,607 | INFO     | [payload] control thread has finished
[2025-06-05 05:11:18] 2025-06-05 01:42:12,670 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 05:11:18] 2025-06-05 01:42:13,002 | INFO     | [job] queue monitor thread has finished
[2025-06-05 05:11:18] 2025-06-05 01:42:13,749 | INFO     | [data] copytool_out thread has finished
[2025-06-05 05:11:18] 2025-06-05 01:42:15,122 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 05:11:18] 2025-06-05 01:42:16,359 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139629523023680)>', '<ExcThread(monitor, started 139629093177088)>']
[2025-06-05 05:11:18] 2025-06-05 01:42:17,320 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 05:11:18] 2025-06-05 01:42:17,320 | INFO     | [monitor] control thread has ended
[2025-06-05 05:11:18] 2025-06-05 01:42:21,385 | INFO     | all workflow threads have been joined
[2025-06-05 05:11:18] 2025-06-05 01:42:21,385 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 05:11:18] 2025-06-05 01:42:21,385 | INFO     | traces error code: 0
[2025-06-05 05:11:18] 2025-06-05 01:42:21,386 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 05:11:18] 2025-06-05 01:42:21,744 [wrapper] ==== pilot stdout END ====
[2025-06-05 05:11:18] 2025-06-05 01:42:21,786 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 05:11:18] 2025-06-05 01:42:21,890 [wrapper] pilotpid: 20803
[2025-06-05 05:11:18] 2025-06-05 01:42:22,002 [wrapper] Pilot exit status: 0
[2025-06-05 05:11:18] 2025-06-05 01:42:22,369 [wrapper] pandaids: 6678287079
[2025-06-05 05:11:18] 2025-06-05 01:42:22,955 [wrapper] cleanup supervisor_pilot 17986 20804
[2025-06-05 05:11:18] 2025-06-05 01:42:23,049 [wrapper] Test setup, not cleaning
[2025-06-05 05:11:18] 2025-06-05 01:42:23,125 [wrapper] apfmon messages muted
[2025-06-05 05:11:18] 2025-06-05 01:42:23,196 [wrapper] ==== wrapper stdout END ====
[2025-06-05 05:11:18] 2025-06-05 01:42:23,278 [wrapper] ==== wrapper stderr END ====
[2025-06-05 05:11:18]  *** Error codes and diagnostics ***
[2025-06-05 05:11:18]     "exeErrorCode": 0,
[2025-06-05 05:11:18]     "exeErrorDiag": "",
[2025-06-05 05:11:18]     "pilotErrorCode": 0,
[2025-06-05 05:11:18]     "pilotErrorDiag": "",
[2025-06-05 05:11:18]  *** Listing of results directory ***
[2025-06-05 05:11:18] total 390768
[2025-06-05 05:11:18] -rw-r--r--. 1 boinc boinc    495897 Jun  4 05:29 pilot3.tar.gz
[2025-06-05 05:11:18] -rwx------. 1 boinc boinc     37140 Jun  4 05:39 runpilot2-wrapper.sh
[2025-06-05 05:11:18] -rw-r--r--. 1 boinc boinc      5111 Jun  4 05:39 queuedata.json
[2025-06-05 05:11:18] -rw-r--r--. 1 boinc boinc       100 Jun  5 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 05:11:18] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 00:04 run_atlas
[2025-06-05 05:11:18] -rw-r--r--. 1 boinc boinc       105 Jun  5 00:04 job.xml
[2025-06-05 05:11:18] -rw-r--r--. 1 boinc boinc      6392 Jun  5 00:04 init_data.xml
[2025-06-05 05:11:18] -rw-r--r--. 2 boinc boinc 216954449 Jun  5 00:04 EVNT.45006593._002072.pool.root.1
[2025-06-05 05:11:18] -rw-r--r--. 2 boinc boinc     15093 Jun  5 00:04 start_atlas.sh
[2025-06-05 05:11:18] drwxrwx--x. 2 boinc boinc        68 Jun  5 00:04 shared
[2025-06-05 05:11:18] -rw-r--r--. 2 boinc boinc    508880 Jun  5 00:04 input.tar.gz
[2025-06-05 05:11:18] -rw-r--r--. 1 boinc boinc         0 Jun  5 00:04 boinc_lockfile
[2025-06-05 05:11:18] -rw-r--r--. 1 boinc boinc      2525 Jun  5 00:04 pandaJob.out
[2025-06-05 05:11:18] -rw-------. 1 boinc boinc    987032 Jun  5 00:07 agis_schedconf.cvmfs.json
[2025-06-05 05:11:18] drwx------. 4 boinc boinc      4096 Jun  5 00:07 pilot3
[2025-06-05 05:11:18] -rw-------. 1 boinc boinc 176392457 Jun  5 03:39 HITS.45006595._051726.pool.root.1
[2025-06-05 05:11:18] -rw-r--r--. 1 boinc boinc       530 Jun  5 03:39 boinc_task_state.xml
[2025-06-05 05:11:18] -rw-------. 1 boinc boinc      1019 Jun  5 03:40 memory_monitor_summary.json
[2025-06-05 05:11:18] -rw-------. 1 boinc boinc   1598969 Jun  5 03:40 agis_ddmendpoints.agis.ALL.json
[2025-06-05 05:11:18] -rw-------. 1 boinc boinc    384609 Jun  5 03:40 log.45006595._051726.job.log.tgz.1
[2025-06-05 05:11:18] -rw-------. 1 boinc boinc        95 Jun  5 03:41 pilot_heartbeat.json
[2025-06-05 05:11:18] -rw-------. 1 boinc boinc      7696 Jun  5 03:42 heartbeat.json
[2025-06-05 05:11:18] -rw-------. 1 boinc boinc      4539 Jun  5 03:42 pilotlog.txt
[2025-06-05 05:11:18] -rw-------. 1 boinc boinc   1106576 Jun  5 03:42 log.45006595._051726.job.log.1
[2025-06-05 05:11:18] -rw-------. 1 boinc boinc       357 Jun  5 03:42 output.list
[2025-06-05 05:11:18] -rw-r--r--. 1 boinc boinc       620 Jun  5 03:42 runtime_log
[2025-06-05 05:11:18] -rw-------. 1 boinc boinc   1515520 Jun  5 03:42 result.tar.gz
[2025-06-05 05:11:18] -rw-------. 1 boinc boinc       656 Jun  5 03:42 XltKDmH9tg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmNeaKDmvfPaEn.diag
[2025-06-05 05:11:18] -rw-r--r--. 1 boinc boinc      8659 Jun  5 03:42 runtime_log.err
[2025-06-05 05:11:18] -rw-r--r--. 1 boinc boinc      8192 Jun  5 05:11 boinc_mmap_file
[2025-06-05 05:11:18] -rw-r--r--. 1 boinc boinc        28 Jun  5 05:11 wrapper_checkpoint.txt
[2025-06-05 05:11:18] -rw-r--r--. 1 boinc boinc     20266 Jun  5 05:11 stderr.txt
[2025-06-05 05:11:18] HITS file was successfully produced:
[2025-06-05 05:11:18] -rw-------. 1 boinc boinc 176392457 Jun  5 03:39 shared/HITS.pool.root.1
[2025-06-05 05:11:18]  *** Contents of shared directory: ***
[2025-06-05 05:11:18] total 386128
[2025-06-05 05:11:18] -rw-r--r--. 2 boinc boinc 216954449 Jun  5 00:04 ATLAS.root_0
[2025-06-05 05:11:18] -rw-r--r--. 2 boinc boinc     15093 Jun  5 00:04 start_atlas.sh
[2025-06-05 05:11:18] -rw-r--r--. 2 boinc boinc    508880 Jun  5 00:04 input.tar.gz
[2025-06-05 05:11:18] -rw-------. 1 boinc boinc 176392457 Jun  5 03:39 HITS.pool.root.1
[2025-06-05 05:11:18] -rw-------. 1 boinc boinc   1515520 Jun  5 03:42 result.tar.gz
05:11:20 (15537): run_atlas exited; CPU time 45096.513329
05:11:20 (15537): called boinc_finish(0)

</stderr_txt>
]]>

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