Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:02:57 (1671868): wrapper (7.7.26015): starting
05:02:57 (1671868): wrapper: running run_atlas (--nthreads 4)
[2025-06-08 05:02:57] Arguments: --nthreads 4
[2025-06-08 05:02:57] Threads: 4
[2025-06-08 05:02:57] Checking for CVMFS
[2025-06-08 05:02:57] No cvmfs_config command found, will try listing directly
[2025-06-08 05:02:57] CVMFS is ok
[2025-06-08 05:02:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-08 05:02:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-08 05:02:57] Further information can be found at the LHC@home message board.
[2025-06-08 05:02:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-08 05:02:57] Checking for apptainer binary...
[2025-06-08 05:02:57] which: no apptainer in ((null))
[2025-06-08 05:02:57] apptainer is not installed, using version from CVMFS
[2025-06-08 05:02:57] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-08 05:02:58] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-06-08 05:02:58] apptainer works
[2025-06-08 05:02:58] Set ATHENA_PROC_NUMBER=4
[2025-06-08 05:02:58] Set ATHENA_CORE_NUMBER=4
[2025-06-08 05:02:58] Starting ATLAS job with PandaID=6678391612
[2025-06-08 05:02:58] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-08 06:20:07]  *** The last 200 lines of the pilot log: ***
[2025-06-08 06:20:07]  is_altstaged=None
[2025-06-08 06:20:07]  is_tar=False
[2025-06-08 06:20:07]  lfn=log.45006595._054974.job.log.tgz.1
[2025-06-08 06:20:07]  mtime=0
[2025-06-08 06:20:07]  protocol_id=None
[2025-06-08 06:20:07]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-08 06:20:07]  replicas=None
[2025-06-08 06:20:07]  scope=mc23_13p6TeV
[2025-06-08 06:20:07]  status=None
[2025-06-08 06:20:07]  status_code=0
[2025-06-08 06:20:07]  storage_token=
[2025-06-08 06:20:07]  surl=/scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6678391612/log.45006595._054974.job.log.tgz.1
[2025-06-08 06:20:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/62/27/log.45006595._054974.job.log.tgz.1
[2025-06-08 06:20:07]  workdir=None
[2025-06-08 06:20:07] ]
[2025-06-08 06:20:07] 2025-06-08 04:19:47,441 | INFO     | transferring file log.45006595._054974.job.log.tgz.1 from /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6678391612/log.45006595._054974.job.log.tgz.1 to /scratch/b
[2025-06-08 06:20:07] 2025-06-08 04:19:47,441 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6678391612/log.45006595._054974.job.log.tgz.1 /scratch/boinc/var/slot60/slots/0/lo
[2025-06-08 06:20:07] 2025-06-08 04:19:47,458 | INFO     | adding to output.list: log.45006595._054974.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/62/27/log.45006595._054974.job.log.tg
[2025-06-08 06:20:07] 2025-06-08 04:19:47,459 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-08 06:20:07] 2025-06-08 04:19:47,459 | INFO     | summary of transferred files:
[2025-06-08 06:20:07] 2025-06-08 04:19:47,459 | INFO     |  -- lfn=log.45006595._054974.job.log.tgz.1, status_code=0, status=transferred
[2025-06-08 06:20:07] 2025-06-08 04:19:47,459 | INFO     | stage-out finished correctly
[2025-06-08 06:20:07] 2025-06-08 04:19:48,062 | INFO     | monitor loop #342: job 0:6678391612 is in state 'finished'
[2025-06-08 06:20:07] 2025-06-08 04:19:48,062 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-08 06:20:07] 2025-06-08 04:19:48,703 | INFO     | PID=1675859 has CPU usage=9.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-08 06:20:07] 2025-06-08 04:19:49,836 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-08 06:20:07] 2025-06-08 04:19:50,173 | INFO     | job 6678391612 has state=finished
[2025-06-08 06:20:07] 2025-06-08 04:19:50,174 | INFO     | preparing for final server update for job 6678391612 in state='finished'
[2025-06-08 06:20:07] 2025-06-08 04:19:50,174 | INFO     | this job has now completed (state=finished)
[2025-06-08 06:20:07] 2025-06-08 04:19:50,174 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-08 06:20:07] 2025-06-08 04:19:50,174 | INFO     | log transfer has been attempted: DONE
[2025-06-08 06:20:07] 2025-06-08 04:19:50,174 | INFO     | job 6678391612 has finished - writing final server update
[2025-06-08 06:20:07] 2025-06-08 04:19:50,175 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1556569/.job.ad'
[2025-06-08 06:20:07] 2025-06-08 04:19:50,175 | INFO     | total number of processed events: 400 (read)
[2025-06-08 06:20:07] 2025-06-08 04:19:50,182 | INFO     | executing command: lscpu
[2025-06-08 06:20:07] 2025-06-08 04:19:50,253 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-08 06:20:07] 2025-06-08 04:19:50,565 | INFO     | monitor loop #343: job 0:6678391612 is in state 'finished'
[2025-06-08 06:20:07] 2025-06-08 04:19:50,566 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-08 06:20:07] 2025-06-08 04:19:53,068 | INFO     | monitor loop #344: job 0:6678391612 is in state 'finished'
[2025-06-08 06:20:07] 2025-06-08 04:19:53,068 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-08 06:20:07] 2025-06-08 04:19:54,735 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-08 06:20:07] 2025-06-08 04:19:54,736 | INFO     | using path: /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6678391612/memory_monitor_summary.json (trf name=prmon)
[2025-06-08 06:20:07] 2025-06-08 04:19:54,736 | INFO     | extracted standard info from prmon json
[2025-06-08 06:20:07] 2025-06-08 04:19:54,737 | INFO     | extracted standard memory fields from prmon json
[2025-06-08 06:20:07] 2025-06-08 04:19:54,737 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-08 06:20:07] 2025-06-08 04:19:54,737 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-08 06:20:07] 2025-06-08 04:19:54,737 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-08 06:20:07] 2025-06-08 04:19:54,738 | INFO     | fitting pss+swap vs Time
[2025-06-08 06:20:07] 2025-06-08 04:19:54,738 | INFO     | sum of square deviations: 97479037.0
[2025-06-08 06:20:07] 2025-06-08 04:19:54,739 | INFO     | sum of deviations: -8168706511.5
[2025-06-08 06:20:07] 2025-06-08 04:19:54,739 | INFO     | mean x: 1749354157.5
[2025-06-08 06:20:07] 2025-06-08 04:19:54,739 | INFO     | mean y: 2462271.338235294
[2025-06-08 06:20:07] 2025-06-08 04:19:54,739 | INFO     | -- intersect: 146597680454.40097
[2025-06-08 06:20:07] 2025-06-08 04:19:54,739 | INFO     | intersect: 146597680454.40097
[2025-06-08 06:20:07] 2025-06-08 04:19:54,739 | INFO     | chi2: 0.14845123708126803
[2025-06-08 06:20:07] 2025-06-08 04:19:54,739 | INFO     | -- intersect: 146597680454.40097
[2025-06-08 06:20:07] 2025-06-08 04:19:54,739 | INFO     | current memory leak: -83.80 B/s (using 68 data points, chi2=0.15)
[2025-06-08 06:20:07] 2025-06-08 04:19:54,739 | INFO     | ..............................
[2025-06-08 06:20:07] 2025-06-08 04:19:54,739 | INFO     | . Timing measurements:
[2025-06-08 06:20:07] 2025-06-08 04:19:54,739 | INFO     | . get job = 0 s
[2025-06-08 06:20:07] 2025-06-08 04:19:54,739 | INFO     | . initial setup = 1 s
[2025-06-08 06:20:07] 2025-06-08 04:19:54,739 | INFO     | . payload setup = 5 s
[2025-06-08 06:20:07] 2025-06-08 04:19:54,739 | INFO     | . stage-in = 0 s
[2025-06-08 06:20:07] 2025-06-08 04:19:54,740 | INFO     | . payload execution = 4578 s
[2025-06-08 06:20:07] 2025-06-08 04:19:54,740 | INFO     | . stage-out = 0 s
[2025-06-08 06:20:07] 2025-06-08 04:19:54,740 | INFO     | . log creation = 0 s
[2025-06-08 06:20:07] 2025-06-08 04:19:54,740 | INFO     | ..............................
[2025-06-08 06:20:07] 2025-06-08 04:19:54,796 | INFO     | 
[2025-06-08 06:20:07] 2025-06-08 04:19:54,797 | INFO     | job summary report
[2025-06-08 06:20:07] 2025-06-08 04:19:54,797 | INFO     | --------------------------------------------------
[2025-06-08 06:20:07] 2025-06-08 04:19:54,797 | INFO     | PanDA job id: 6678391612
[2025-06-08 06:20:07] 2025-06-08 04:19:54,797 | INFO     | task id: 45006595
[2025-06-08 06:20:07] 2025-06-08 04:19:54,797 | INFO     | errors: (none)
[2025-06-08 06:20:07] 2025-06-08 04:19:54,797 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-08 06:20:07] 2025-06-08 04:19:54,797 | INFO     | pilot state: finished 
[2025-06-08 06:20:07] 2025-06-08 04:19:54,797 | INFO     | transexitcode: 0
[2025-06-08 06:20:07] 2025-06-08 04:19:54,797 | INFO     | exeerrorcode: 0
[2025-06-08 06:20:07] 2025-06-08 04:19:54,797 | INFO     | exeerrordiag: 
[2025-06-08 06:20:07] 2025-06-08 04:19:54,797 | INFO     | exitcode: 0
[2025-06-08 06:20:07] 2025-06-08 04:19:54,797 | INFO     | exitmsg: OK
[2025-06-08 06:20:07] 2025-06-08 04:19:54,797 | INFO     | cpuconsumptiontime: 17307 s
[2025-06-08 06:20:07] 2025-06-08 04:19:54,797 | INFO     | nevents: 400
[2025-06-08 06:20:07] 2025-06-08 04:19:54,798 | INFO     | neventsw: 0
[2025-06-08 06:20:07] 2025-06-08 04:19:54,798 | INFO     | pid: 1683553
[2025-06-08 06:20:07] 2025-06-08 04:19:54,798 | INFO     | pgrp: 1683553
[2025-06-08 06:20:07] 2025-06-08 04:19:54,798 | INFO     | corecount: 4
[2025-06-08 06:20:07] 2025-06-08 04:19:54,798 | INFO     | event service: False
[2025-06-08 06:20:07] 2025-06-08 04:19:54,798 | INFO     | sizes: {0: 2397353, 4: 2397559, 11: 2397587, 4587: 2423745, 4588: 2432708, 4590: 2432764, 4595: 2433062}
[2025-06-08 06:20:07] 2025-06-08 04:19:54,798 | INFO     | --------------------------------------------------
[2025-06-08 06:20:07] 2025-06-08 04:19:54,798 | INFO     | 
[2025-06-08 06:20:07] 2025-06-08 04:19:54,798 | INFO     | executing command: ls -lF /scratch/boinc/var/slot60/slots/0
[2025-06-08 06:20:07] 2025-06-08 04:19:54,818 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-08 06:20:07] 2025-06-08 04:19:54,818 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-08 06:20:07] 2025-06-08 04:19:54,818 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-08 06:20:07] 2025-06-08 04:19:54,818 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-08 06:20:07] 2025-06-08 04:19:54,818 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-08 06:20:07] 2025-06-08 04:19:54,818 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-08 06:20:07] 2025-06-08 04:19:54,818 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-08 06:20:07] 2025-06-08 04:19:54,818 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-08 06:20:07] 2025-06-08 04:19:54,818 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-08 06:20:07] 2025-06-08 04:19:54,819 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-08 06:20:07] 2025-06-08 04:19:54,819 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-08 06:20:07] 2025-06-08 04:19:54,819 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-08 06:20:07] 2025-06-08 04:19:54,819 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-08 06:20:07] 2025-06-08 04:19:54,819 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-08 06:20:07] 2025-06-08 04:19:54,819 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-08 06:20:07] 2025-06-08 04:19:54,819 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-08 06:20:07] 2025-06-08 04:19:54,819 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-08 06:20:07] 2025-06-08 04:19:54,819 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-08 06:20:07] 2025-06-08 04:19:54,819 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-08 06:20:07] 2025-06-08 04:19:54,819 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-08 06:20:07] 2025-06-08 04:19:54,819 | INFO     | job 6678391612 has completed (purged errors)
[2025-06-08 06:20:07] 2025-06-08 04:19:54,819 | INFO     | overall cleanup function is called
[2025-06-08 06:20:07] 2025-06-08 04:19:55,827 | INFO     | --- collectZombieJob: --- 10, [1683553]
[2025-06-08 06:20:07] 2025-06-08 04:19:55,827 | INFO     | zombie collector waiting for pid 1683553
[2025-06-08 06:20:07] 2025-06-08 04:19:55,827 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-08 06:20:07] 2025-06-08 04:19:55,827 | INFO     | collected zombie processes
[2025-06-08 06:20:07] 2025-06-08 04:19:55,827 | INFO     | will attempt to kill all subprocesses of pid=1683553
[2025-06-08 06:20:07] 2025-06-08 04:19:56,113 | INFO     | process IDs to be killed: [1683553] (in reverse order)
[2025-06-08 06:20:07] 2025-06-08 04:19:56,214 | WARNING  | found no corresponding commands to process id(s)
[2025-06-08 06:20:07] 2025-06-08 04:19:56,214 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-08 06:20:07] 2025-06-08 04:19:56,227 | INFO     | did not find any defunct processes belonging to 1683553
[2025-06-08 06:20:07] 2025-06-08 04:19:56,236 | INFO     | did not find any defunct processes belonging to 1683553
[2025-06-08 06:20:07] 2025-06-08 04:19:56,236 | INFO     | ready for new job
[2025-06-08 06:20:07] 2025-06-08 04:19:56,237 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-08 06:20:07] 2025-06-08 04:19:56,238 | INFO     | **************************************
[2025-06-08 06:20:07] 2025-06-08 04:19:56,238 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-08 06:20:07] 2025-06-08 04:19:56,238 | INFO     | **************************************
[2025-06-08 06:20:07] 2025-06-08 04:19:56,238 | INFO     | 
[2025-06-08 06:20:07] 2025-06-08 04:19:56,243 | INFO     | architecture information:
[2025-06-08 06:20:07] 2025-06-08 04:19:56,243 | INFO     | executing command: cat /etc/os-release
[2025-06-08 06:20:07] 2025-06-08 04:19:56,256 | INFO     | cat /etc/os-release:
[2025-06-08 06:20:07] NAME="CentOS Linux"
[2025-06-08 06:20:07] VERSION="7 (Core)"
[2025-06-08 06:20:07] ID="centos"
[2025-06-08 06:20:07] ID_LIKE="rhel fedora"
[2025-06-08 06:20:07] VERSION_ID="7"
[2025-06-08 06:20:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-08 06:20:07] ANSI_COLOR="0;31"
[2025-06-08 06:20:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-08 06:20:07] HOME_URL="https://www.centos.org/"
[2025-06-08 06:20:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-08 06:20:07] 
[2025-06-08 06:20:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-08 06:20:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-08 06:20:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-08 06:20:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-08 06:20:07] 
[2025-06-08 06:20:07] 2025-06-08 04:19:56,256 | INFO     | **************************************
[2025-06-08 06:20:07] 2025-06-08 04:19:56,759 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/0
[2025-06-08 06:20:07] 2025-06-08 04:19:56,771 | INFO     | sufficient remaining disk space (3378207784960 B)
[2025-06-08 06:20:07] 2025-06-08 04:19:56,771 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-08 06:20:07] 2025-06-08 04:19:56,772 | INFO     | current server update state: UPDATING_FINAL
[2025-06-08 06:20:07] 2025-06-08 04:19:56,772 | INFO     | update_server=False
[2025-06-08 06:20:07] 2025-06-08 04:19:56,772 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-08 06:20:07] 2025-06-08 04:19:56,772 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-08 06:20:07] 2025-06-08 04:19:56,772 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-08 06:20:07] 2025-06-08 04:19:56,773 | INFO     | found 0 job(s) in 20 queues
[2025-06-08 06:20:07] 2025-06-08 04:19:56,773 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-08 06:20:07] 2025-06-08 04:19:56,773 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-08 06:20:07] 2025-06-08 04:19:56,773 | INFO     | aborting loop
[2025-06-08 06:20:07] 2025-06-08 04:19:56,774 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-08 06:20:07] 2025-06-08 04:19:56,774 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-08 06:20:07] 2025-06-08 04:19:56,808 | INFO     | all payload control threads have been joined
[2025-06-08 06:20:07] 2025-06-08 04:19:57,081 | INFO     | all data control threads have been joined
[2025-06-08 06:20:07] 2025-06-08 04:19:57,777 | INFO     | [job] retrieve thread has finished
[2025-06-08 06:20:07] 2025-06-08 04:19:57,778 | INFO     | [job] queue monitor thread has finished
[2025-06-08 06:20:07] 2025-06-08 04:19:57,779 | INFO     | [job] job monitor thread has finished
[2025-06-08 06:20:07] 2025-06-08 04:19:57,812 | INFO     | [data] copytool_in thread has finished
[2025-06-08 06:20:07] 2025-06-08 04:19:57,814 | INFO     | [payload] control thread has finished
[2025-06-08 06:20:07] 2025-06-08 04:19:57,978 | INFO     | [payload] execute_payloads thread has finished
[2025-06-08 06:20:07] 2025-06-08 04:19:58,026 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-08 06:20:07] 2025-06-08 04:19:58,086 | INFO     | [data] control thread has finished
[2025-06-08 06:20:07] 2025-06-08 04:19:58,112 | INFO     | all job control threads have been joined
[2025-06-08 06:20:07] 2025-06-08 04:19:58,211 | INFO     | [job] validate thread has finished
[2025-06-08 06:20:07] 2025-06-08 04:19:58,275 | INFO     | [payload] failed_post thread has finished
[2025-06-08 06:20:07] 2025-06-08 04:19:58,376 | INFO     | [job] create_data_payload thread has finished
[2025-06-08 06:20:07] 2025-06-08 04:19:58,724 | INFO     | [payload] validate_pre thread has finished
[2025-06-08 06:20:07] 2025-06-08 04:19:58,783 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-08 06:20:07] 2025-06-08 04:19:59,118 | INFO     | [job] control thread has finished
[2025-06-08 06:20:07] 2025-06-08 04:19:59,184 | INFO     | [payload] validate_post thread has finished
[2025-06-08 06:20:07] 2025-06-08 04:20:00,031 | INFO     | [data] copytool_out thread has finished
[2025-06-08 06:20:07] 2025-06-08 04:20:00,780 | INFO     | [data] queue_monitor thread has finished
[2025-06-08 06:20:07] 2025-06-08 04:20:02,331 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23020584150848)>', '<ExcThread(monitor, started 23020141782784)>']
[2025-06-08 06:20:07] 2025-06-08 04:20:02,805 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-08 06:20:07] 2025-06-08 04:20:02,805 | INFO     | [monitor] control thread has ended
[2025-06-08 06:20:07] 2025-06-08 04:20:07,342 | INFO     | all workflow threads have been joined
[2025-06-08 06:20:07] 2025-06-08 04:20:07,342 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-08 06:20:07] 2025-06-08 04:20:07,343 | INFO     | traces error code: 0
[2025-06-08 06:20:07] 2025-06-08 04:20:07,343 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-08 06:20:07] 2025-06-08 04:20:07,443 [wrapper] ==== pilot stdout END ====
[2025-06-08 06:20:07] 2025-06-08 04:20:07,445 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-08 06:20:07] 2025-06-08 04:20:07,447 [wrapper] pilotpid: 1675859
[2025-06-08 06:20:07] 2025-06-08 04:20:07,449 [wrapper] Pilot exit status: 0
[2025-06-08 06:20:07] 2025-06-08 04:20:07,458 [wrapper] pandaids: 6678391612
[2025-06-08 06:20:07] 2025-06-08 04:20:07,532 [wrapper] cleanup supervisor_pilot 1743903 1675860
[2025-06-08 06:20:07] 2025-06-08 04:20:07,534 [wrapper] Test setup, not cleaning
[2025-06-08 06:20:07] 2025-06-08 04:20:07,536 [wrapper] apfmon messages muted
[2025-06-08 06:20:07] 2025-06-08 04:20:07,538 [wrapper] ==== wrapper stdout END ====
[2025-06-08 06:20:07] 2025-06-08 04:20:07,540 [wrapper] ==== wrapper stderr END ====
[2025-06-08 06:20:07]  *** Error codes and diagnostics ***
[2025-06-08 06:20:07]     "exeErrorCode": 0,
[2025-06-08 06:20:07]     "exeErrorDiag": "",
[2025-06-08 06:20:07]     "pilotErrorCode": 0,
[2025-06-08 06:20:07]     "pilotErrorDiag": "",
[2025-06-08 06:20:07]  *** Listing of results directory ***
[2025-06-08 06:20:07] total 386556
[2025-06-08 06:20:07] -rw-r--r-- 1 boinc boinc    495897 Jun  4 09:04 pilot3.tar.gz
[2025-06-08 06:20:07] -rw-r--r-- 1 boinc boinc      5111 Jun  4 09:33 queuedata.json
[2025-06-08 06:20:07] -rwx------ 1 boinc boinc     37140 Jun  4 09:33 runpilot2-wrapper.sh
[2025-06-08 06:20:07] -rw-r--r-- 1 boinc boinc       100 Jun  8 05:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-08 06:20:07] -rwxr-xr-x 1 boinc boinc      7986 Jun  8 05:02 run_atlas
[2025-06-08 06:20:07] -rw-r--r-- 1 boinc boinc       105 Jun  8 05:02 job.xml
[2025-06-08 06:20:07] -rw-r--r-- 1 boinc boinc      6686 Jun  8 05:02 init_data.xml
[2025-06-08 06:20:07] -rw-r--r-- 2 boinc boinc 213512694 Jun  8 05:02 EVNT.45006593._002199.pool.root.1
[2025-06-08 06:20:07] -rw-r--r-- 2 boinc boinc     15093 Jun  8 05:02 start_atlas.sh
[2025-06-08 06:20:07] drwxrwx--x 2 boinc boinc      4096 Jun  8 05:02 shared
[2025-06-08 06:20:07] -rw-r--r-- 2 boinc boinc    508886 Jun  8 05:02 input.tar.gz
[2025-06-08 06:20:07] -rw-r--r-- 1 boinc boinc         0 Jun  8 05:02 boinc_lockfile
[2025-06-08 06:20:07] -rw-r--r-- 1 boinc boinc      2525 Jun  8 05:02 pandaJob.out
[2025-06-08 06:20:07] -rw------- 1 boinc boinc    985748 Jun  8 05:03 agis_schedconf.cvmfs.json
[2025-06-08 06:20:07] -rw------- 1 boinc boinc   1598969 Jun  8 05:03 agis_ddmendpoints.agis.ALL.json
[2025-06-08 06:20:07] drwx------ 4 boinc boinc      4096 Jun  8 05:03 pilot3
[2025-06-08 06:20:07] -rw------- 1 boinc boinc 177086897 Jun  8 06:19 HITS.45006595._054974.pool.root.1
[2025-06-08 06:20:07] -rw-r--r-- 1 boinc boinc       529 Jun  8 06:19 boinc_task_state.xml
[2025-06-08 06:20:07] -rw------- 1 boinc boinc        95 Jun  8 06:19 pilot_heartbeat.json
[2025-06-08 06:20:07] -rw------- 1 boinc boinc      1024 Jun  8 06:19 memory_monitor_summary.json
[2025-06-08 06:20:07] -rw------- 1 boinc boinc    255193 Jun  8 06:19 log.45006595._054974.job.log.tgz.1
[2025-06-08 06:20:07] -rw------- 1 boinc boinc      7700 Jun  8 06:19 heartbeat.json
[2025-06-08 06:20:07] -rw-r--r-- 1 boinc boinc        27 Jun  8 06:20 wrapper_checkpoint.txt
[2025-06-08 06:20:07] -rw-r--r-- 1 boinc boinc      8192 Jun  8 06:20 boinc_mmap_file
[2025-06-08 06:20:07] -rw------- 1 boinc boinc      4487 Jun  8 06:20 pilotlog.txt
[2025-06-08 06:20:07] -rw------- 1 boinc boinc    446000 Jun  8 06:20 log.45006595._054974.job.log.1
[2025-06-08 06:20:07] -rw------- 1 boinc boinc       357 Jun  8 06:20 output.list
[2025-06-08 06:20:07] -rw-r--r-- 1 boinc boinc       620 Jun  8 06:20 runtime_log
[2025-06-08 06:20:07] -rw------- 1 boinc boinc    716800 Jun  8 06:20 result.tar.gz
[2025-06-08 06:20:07] -rw-r--r-- 1 boinc boinc      9025 Jun  8 06:20 runtime_log.err
[2025-06-08 06:20:07] -rw------- 1 boinc boinc       660 Jun  8 06:20 5Q5LDmMoxg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmtvaKDmiSJgqn.diag
[2025-06-08 06:20:07] -rw-r--r-- 1 boinc boinc     21387 Jun  8 06:20 stderr.txt
[2025-06-08 06:20:07] HITS file was successfully produced:
[2025-06-08 06:20:07] -rw------- 1 boinc boinc 177086897 Jun  8 06:19 shared/HITS.pool.root.1
[2025-06-08 06:20:07]  *** Contents of shared directory: ***
[2025-06-08 06:20:07] total 382676
[2025-06-08 06:20:07] -rw-r--r-- 2 boinc boinc 213512694 Jun  8 05:02 ATLAS.root_0
[2025-06-08 06:20:07] -rw-r--r-- 2 boinc boinc     15093 Jun  8 05:02 start_atlas.sh
[2025-06-08 06:20:07] -rw-r--r-- 2 boinc boinc    508886 Jun  8 05:02 input.tar.gz
[2025-06-08 06:20:07] -rw------- 1 boinc boinc 177086897 Jun  8 06:19 HITS.pool.root.1
[2025-06-08 06:20:07] -rw------- 1 boinc boinc    716800 Jun  8 06:20 result.tar.gz
06:20:09 (1671868): run_atlas exited; CPU time 17413.913975
06:20:09 (1671868): called boinc_finish(0)

</stderr_txt>
]]>

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