Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:56:37 (3437728): wrapper (7.7.26015): starting
09:56:37 (3437728): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 09:56:37] Arguments: --nthreads 8
[2025-06-04 09:56:37] Threads: 8
[2025-06-04 09:56:37] Checking for CVMFS
[2025-06-04 09:56:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 09:56:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 09:56:37] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 09:56:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 09:56:38] 2.12.6.0 2939844 23335 451712 146781 2 604 30162656 40960001 7226 16776704 1 124467823 99.691 105544325 27887 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 09:56:38] CVMFS is ok
[2025-06-04 09:56:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 09:56:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 09:56:38] Further information can be found at the LHC@home message board.
[2025-06-04 09:56:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 09:56:38] Checking for apptainer binary...
[2025-06-04 09:56:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 09:56:38] Running /usr/bin/apptainer --version
[2025-06-04 09:56:38] apptainer version 1.4.1-1.el9
[2025-06-04 09:56:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 09:56:38] c7-11-15.aglt2.org
[2025-06-04 09:56:38] apptainer works
[2025-06-04 09:56:38] Set ATHENA_PROC_NUMBER=8
[2025-06-04 09:56:38] Set ATHENA_CORE_NUMBER=8
[2025-06-04 09:56:38] Starting ATLAS job with PandaID=6678313530
[2025-06-04 09:56:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 10:48:53]  *** The last 200 lines of the pilot log: ***
[2025-06-04 10:48:53]  filesize=281018
[2025-06-04 10:48:53]  filetype=log
[2025-06-04 10:48:53]  guid=250397e8-d4d7-4a23-a52b-33cce855e95b
[2025-06-04 10:48:53]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 10:48:53]  is_altstaged=None
[2025-06-04 10:48:53]  is_tar=False
[2025-06-04 10:48:53]  lfn=log.45006595._052510.job.log.tgz.1
[2025-06-04 10:48:53]  mtime=0
[2025-06-04 10:48:53]  protocol_id=None
[2025-06-04 10:48:53]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 10:48:53]  replicas=None
[2025-06-04 10:48:53]  scope=mc23_13p6TeV
[2025-06-04 10:48:53]  status=None
[2025-06-04 10:48:53]  status_code=0
[2025-06-04 10:48:53]  storage_token=
[2025-06-04 10:48:53]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6678313530/log.45006595._052510.job.log.tgz.1
[2025-06-04 10:48:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/84/a6/log.45006595._052510.job.log.tgz.1
[2025-06-04 10:48:53]  workdir=None
[2025-06-04 10:48:53] ]
[2025-06-04 10:48:53] 2025-06-04 14:48:32,297 | INFO     | transferring file log.45006595._052510.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6678313530/log.45006595._052510.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 10:48:53] 2025-06-04 14:48:32,297 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6678313530/log.45006595._052510.job.log.tgz.1 /tmp/boinchome/slots/1/log.45006595._052510.job
[2025-06-04 10:48:53] 2025-06-04 14:48:32,317 | INFO     | adding to output.list: log.45006595._052510.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/84/a6/log.45006595._052510.job.log.tg
[2025-06-04 10:48:53] 2025-06-04 14:48:32,317 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 10:48:53] 2025-06-04 14:48:32,317 | INFO     | summary of transferred files:
[2025-06-04 10:48:53] 2025-06-04 14:48:32,317 | INFO     |  -- lfn=log.45006595._052510.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 10:48:53] 2025-06-04 14:48:32,318 | INFO     | stage-out finished correctly
[2025-06-04 10:48:53] 2025-06-04 14:48:32,395 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 10:48:53] 2025-06-04 14:48:33,945 | INFO     | job 6678313530 has state=finished
[2025-06-04 10:48:53] 2025-06-04 14:48:33,946 | INFO     | preparing for final server update for job 6678313530 in state='finished'
[2025-06-04 10:48:53] 2025-06-04 14:48:33,946 | INFO     | this job has now completed (state=finished)
[2025-06-04 10:48:53] 2025-06-04 14:48:33,946 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 10:48:53] 2025-06-04 14:48:33,946 | INFO     | log transfer has been attempted: DONE
[2025-06-04 10:48:53] 2025-06-04 14:48:33,946 | INFO     | job 6678313530 has finished - writing final server update
[2025-06-04 10:48:53] 2025-06-04 14:48:33,947 | INFO     | total number of processed events: 400 (read)
[2025-06-04 10:48:53] 2025-06-04 14:48:33,962 | INFO     | executing command: lscpu
[2025-06-04 10:48:53] 2025-06-04 14:48:34,040 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 10:48:53] 2025-06-04 14:48:35,643 | WARNING  | process 3448253 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 10:48:53] 2025-06-04 14:48:35,644 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6678313530/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 10:48:53] 2025-06-04 14:48:35,881 | INFO     | number of running child processes to parent process 3448253: 1
[2025-06-04 10:48:53] 2025-06-04 14:48:35,881 | INFO     | maximum number of monitored processes: 6
[2025-06-04 10:48:53] 2025-06-04 14:48:37,284 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 10:48:53] 2025-06-04 14:48:37,284 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6678313530/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 10:48:53] 2025-06-04 14:48:37,285 | INFO     | extracted standard info from prmon json
[2025-06-04 10:48:53] 2025-06-04 14:48:37,285 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 10:48:53] 2025-06-04 14:48:37,285 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 10:48:53] 2025-06-04 14:48:37,285 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 10:48:53] 2025-06-04 14:48:37,286 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 10:48:53] 2025-06-04 14:48:37,288 | INFO     | fitting pss+swap vs Time
[2025-06-04 10:48:53] 2025-06-04 14:48:37,288 | INFO     | sum of square deviations: 26400495.0
[2025-06-04 10:48:53] 2025-06-04 14:48:37,288 | INFO     | sum of deviations: 2914794628.499999
[2025-06-04 10:48:53] 2025-06-04 14:48:37,288 | INFO     | mean x: 1749047047.5
[2025-06-04 10:48:53] 2025-06-04 14:48:37,289 | INFO     | mean y: 2274680.2954545454
[2025-06-04 10:48:53] 2025-06-04 14:48:37,289 | INFO     | -- intersect: -193104443169.0018
[2025-06-04 10:48:53] 2025-06-04 14:48:37,289 | INFO     | intersect: -193104443169.0018
[2025-06-04 10:48:53] 2025-06-04 14:48:37,289 | INFO     | chi2: 0.8045506962754038
[2025-06-04 10:48:53] 2025-06-04 14:48:37,289 | INFO     | -- intersect: -193104443169.0018
[2025-06-04 10:48:53] 2025-06-04 14:48:37,289 | INFO     | current memory leak: 110.41 B/s (using 44 data points, chi2=0.80)
[2025-06-04 10:48:53] 2025-06-04 14:48:37,289 | INFO     | ..............................
[2025-06-04 10:48:53] 2025-06-04 14:48:37,289 | INFO     | . Timing measurements:
[2025-06-04 10:48:53] 2025-06-04 14:48:37,289 | INFO     | . get job = 0 s
[2025-06-04 10:48:53] 2025-06-04 14:48:37,289 | INFO     | . initial setup = 2 s
[2025-06-04 10:48:53] 2025-06-04 14:48:37,290 | INFO     | . payload setup = 5 s
[2025-06-04 10:48:53] 2025-06-04 14:48:37,290 | INFO     | . stage-in = 0 s
[2025-06-04 10:48:53] 2025-06-04 14:48:37,290 | INFO     | . payload execution = 3080 s
[2025-06-04 10:48:53] 2025-06-04 14:48:37,290 | INFO     | . stage-out = 0 s
[2025-06-04 10:48:53] 2025-06-04 14:48:37,290 | INFO     | . log creation = 0 s
[2025-06-04 10:48:53] 2025-06-04 14:48:37,290 | INFO     | ..............................
[2025-06-04 10:48:53] 2025-06-04 14:48:37,782 | INFO     | 
[2025-06-04 10:48:53] 2025-06-04 14:48:37,783 | INFO     | job summary report
[2025-06-04 10:48:53] 2025-06-04 14:48:37,783 | INFO     | --------------------------------------------------
[2025-06-04 10:48:53] 2025-06-04 14:48:37,783 | INFO     | PanDA job id: 6678313530
[2025-06-04 10:48:53] 2025-06-04 14:48:37,783 | INFO     | task id: 45006595
[2025-06-04 10:48:53] 2025-06-04 14:48:37,783 | INFO     | errors: (none)
[2025-06-04 10:48:53] 2025-06-04 14:48:37,783 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 10:48:53] 2025-06-04 14:48:37,783 | INFO     | pilot state: finished 
[2025-06-04 10:48:53] 2025-06-04 14:48:37,783 | INFO     | transexitcode: 0
[2025-06-04 10:48:53] 2025-06-04 14:48:37,783 | INFO     | exeerrorcode: 0
[2025-06-04 10:48:53] 2025-06-04 14:48:37,783 | INFO     | exeerrordiag: 
[2025-06-04 10:48:53] 2025-06-04 14:48:37,783 | INFO     | exitcode: 0
[2025-06-04 10:48:53] 2025-06-04 14:48:37,783 | INFO     | exitmsg: OK
[2025-06-04 10:48:53] 2025-06-04 14:48:37,783 | INFO     | cpuconsumptiontime: 19789 s
[2025-06-04 10:48:53] 2025-06-04 14:48:37,784 | INFO     | nevents: 400
[2025-06-04 10:48:53] 2025-06-04 14:48:37,784 | INFO     | neventsw: 0
[2025-06-04 10:48:53] 2025-06-04 14:48:37,784 | INFO     | pid: 3448253
[2025-06-04 10:48:53] 2025-06-04 14:48:37,784 | INFO     | pgrp: 3448253
[2025-06-04 10:48:53] 2025-06-04 14:48:37,784 | INFO     | corecount: 8
[2025-06-04 10:48:53] 2025-06-04 14:48:37,784 | INFO     | event service: False
[2025-06-04 10:48:53] 2025-06-04 14:48:37,784 | INFO     | sizes: {0: 2397171, 1: 2397370, 4: 2397576, 11: 2397604, 3089: 2423050, 3090: 2432175, 3095: 2432289}
[2025-06-04 10:48:53] 2025-06-04 14:48:37,784 | INFO     | --------------------------------------------------
[2025-06-04 10:48:53] 2025-06-04 14:48:37,784 | INFO     | 
[2025-06-04 10:48:53] 2025-06-04 14:48:37,784 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-04 10:48:53] 2025-06-04 14:48:37,804 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 10:48:53] 2025-06-04 14:48:37,804 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 10:48:53] 2025-06-04 14:48:37,804 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 10:48:53] 2025-06-04 14:48:37,804 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 10:48:53] 2025-06-04 14:48:37,804 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 10:48:53] 2025-06-04 14:48:37,804 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 10:48:53] 2025-06-04 14:48:37,805 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 10:48:53] 2025-06-04 14:48:37,805 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 10:48:53] 2025-06-04 14:48:37,805 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 10:48:53] 2025-06-04 14:48:37,805 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 10:48:53] 2025-06-04 14:48:37,805 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 10:48:53] 2025-06-04 14:48:37,805 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 10:48:53] 2025-06-04 14:48:37,805 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 10:48:53] 2025-06-04 14:48:37,805 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 10:48:53] 2025-06-04 14:48:37,805 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 10:48:53] 2025-06-04 14:48:37,805 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 10:48:53] 2025-06-04 14:48:37,805 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 10:48:53] 2025-06-04 14:48:37,805 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 10:48:53] 2025-06-04 14:48:37,806 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 10:48:53] 2025-06-04 14:48:37,806 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 10:48:53] 2025-06-04 14:48:37,806 | INFO     | job 6678313530 has completed (purged errors)
[2025-06-04 10:48:53] 2025-06-04 14:48:37,806 | INFO     | overall cleanup function is called
[2025-06-04 10:48:53] 2025-06-04 14:48:38,815 | INFO     | --- collectZombieJob: --- 10, [3448253]
[2025-06-04 10:48:53] 2025-06-04 14:48:38,815 | INFO     | zombie collector waiting for pid 3448253
[2025-06-04 10:48:53] 2025-06-04 14:48:38,815 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 10:48:53] 2025-06-04 14:48:38,815 | INFO     | collected zombie processes
[2025-06-04 10:48:53] 2025-06-04 14:48:38,815 | INFO     | will attempt to kill all subprocesses of pid=3448253
[2025-06-04 10:48:53] 2025-06-04 14:48:39,019 | INFO     | process IDs to be killed: [3448253] (in reverse order)
[2025-06-04 10:48:53] 2025-06-04 14:48:39,104 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 10:48:53] 2025-06-04 14:48:39,104 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 10:48:53] 2025-06-04 14:48:39,114 | INFO     | did not find any defunct processes belonging to 3448253
[2025-06-04 10:48:53] 2025-06-04 14:48:39,123 | INFO     | did not find any defunct processes belonging to 3448253
[2025-06-04 10:48:53] 2025-06-04 14:48:39,123 | INFO     | ready for new job
[2025-06-04 10:48:53] 2025-06-04 14:48:39,123 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 10:48:53] 2025-06-04 14:48:39,125 | INFO     | **************************************
[2025-06-04 10:48:53] 2025-06-04 14:48:39,125 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 10:48:53] 2025-06-04 14:48:39,125 | INFO     | **************************************
[2025-06-04 10:48:53] 2025-06-04 14:48:39,125 | INFO     | 
[2025-06-04 10:48:53] 2025-06-04 14:48:39,139 | INFO     | architecture information:
[2025-06-04 10:48:53] 2025-06-04 14:48:39,140 | INFO     | executing command: cat /etc/os-release
[2025-06-04 10:48:53] 2025-06-04 14:48:39,154 | INFO     | cat /etc/os-release:
[2025-06-04 10:48:53] NAME="CentOS Linux"
[2025-06-04 10:48:53] VERSION="7 (Core)"
[2025-06-04 10:48:53] ID="centos"
[2025-06-04 10:48:53] ID_LIKE="rhel fedora"
[2025-06-04 10:48:53] VERSION_ID="7"
[2025-06-04 10:48:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 10:48:53] ANSI_COLOR="0;31"
[2025-06-04 10:48:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 10:48:53] HOME_URL="https://www.centos.org/"
[2025-06-04 10:48:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 10:48:53] 
[2025-06-04 10:48:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 10:48:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 10:48:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 10:48:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 10:48:53] 
[2025-06-04 10:48:53] 2025-06-04 14:48:39,154 | INFO     | **************************************
[2025-06-04 10:48:53] 2025-06-04 14:48:39,657 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-04 10:48:53] 2025-06-04 14:48:39,672 | INFO     | sufficient remaining disk space (85997912064 B)
[2025-06-04 10:48:53] 2025-06-04 14:48:39,672 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 10:48:53] 2025-06-04 14:48:39,673 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 10:48:53] 2025-06-04 14:48:39,673 | INFO     | update_server=False
[2025-06-04 10:48:53] 2025-06-04 14:48:39,673 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 10:48:53] 2025-06-04 14:48:39,673 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 10:48:53] 2025-06-04 14:48:39,673 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:48:53] 2025-06-04 14:48:39,674 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 10:48:53] 2025-06-04 14:48:39,674 | INFO     | aborting loop
[2025-06-04 10:48:53] 2025-06-04 14:48:39,674 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 10:48:53] 2025-06-04 14:48:39,674 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 10:48:53] 2025-06-04 14:48:39,841 | INFO     | all payload control threads have been joined
[2025-06-04 10:48:53] 2025-06-04 14:48:40,406 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 10:48:53] 2025-06-04 14:48:40,443 | INFO     | all data control threads have been joined
[2025-06-04 10:48:53] 2025-06-04 14:48:40,545 | INFO     | all job control threads have been joined
[2025-06-04 10:48:53] 2025-06-04 14:48:40,678 | INFO     | [job] retrieve thread has finished
[2025-06-04 10:48:53] 2025-06-04 14:48:40,679 | INFO     | [job] job monitor thread has finished
[2025-06-04 10:48:53] 2025-06-04 14:48:40,794 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 10:48:53] 2025-06-04 14:48:40,796 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 10:48:53] 2025-06-04 14:48:40,846 | INFO     | [payload] control thread has finished
[2025-06-04 10:48:53] 2025-06-04 14:48:40,944 | INFO     | [payload] failed_post thread has finished
[2025-06-04 10:48:53] 2025-06-04 14:48:41,193 | INFO     | [data] copytool_in thread has finished
[2025-06-04 10:48:53] 2025-06-04 14:48:41,449 | INFO     | [data] control thread has finished
[2025-06-04 10:48:53] 2025-06-04 14:48:41,550 | INFO     | [job] control thread has finished
[2025-06-04 10:48:53] 2025-06-04 14:48:41,571 | INFO     | [payload] validate_post thread has finished
[2025-06-04 10:48:53] 2025-06-04 14:48:41,582 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 10:48:53] 2025-06-04 14:48:41,969 | INFO     | [job] validate thread has finished
[2025-06-04 10:48:53] 2025-06-04 14:48:42,004 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 10:48:53] 2025-06-04 14:48:42,369 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:48:53] 2025-06-04 14:48:42,411 | INFO     | [data] copytool_out thread has finished
[2025-06-04 10:48:53] 2025-06-04 14:48:42,959 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 10:48:53] 2025-06-04 14:48:43,375 | INFO     | [job] queue monitor thread has finished
[2025-06-04 10:48:53] 2025-06-04 14:48:46,965 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 10:48:53] 2025-06-04 14:48:48,362 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140475840640832)>', '<ExcThread(monitor, started 140475327559424)>']
[2025-06-04 10:48:53] 2025-06-04 14:48:48,719 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 10:48:53] 2025-06-04 14:48:48,720 | INFO     | [monitor] control thread has ended
[2025-06-04 10:48:53] 2025-06-04 14:48:53,387 | INFO     | all workflow threads have been joined
[2025-06-04 10:48:53] 2025-06-04 14:48:53,387 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 10:48:53] 2025-06-04 14:48:53,387 | INFO     | traces error code: 0
[2025-06-04 10:48:53] 2025-06-04 14:48:53,387 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 10:48:53] 2025-06-04 14:48:53,482 [wrapper] ==== pilot stdout END ====
[2025-06-04 10:48:53] 2025-06-04 14:48:53,485 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 10:48:53] 2025-06-04 14:48:53,487 [wrapper] pilotpid: 3441345
[2025-06-04 10:48:53] 2025-06-04 14:48:53,489 [wrapper] Pilot exit status: 0
[2025-06-04 10:48:53] 2025-06-04 14:48:53,499 [wrapper] pandaids: 6678313530
[2025-06-04 10:48:53] 2025-06-04 14:48:53,558 [wrapper] cleanup supervisor_pilot 3608196 3441346
[2025-06-04 10:48:53] 2025-06-04 14:48:53,561 [wrapper] Test setup, not cleaning
[2025-06-04 10:48:53] 2025-06-04 14:48:53,563 [wrapper] apfmon messages muted
[2025-06-04 10:48:53] 2025-06-04 14:48:53,565 [wrapper] ==== wrapper stdout END ====
[2025-06-04 10:48:53] 2025-06-04 14:48:53,567 [wrapper] ==== wrapper stderr END ====
[2025-06-04 10:48:53]  *** Error codes and diagnostics ***
[2025-06-04 10:48:53]     "exeErrorCode": 0,
[2025-06-04 10:48:53]     "exeErrorDiag": "",
[2025-06-04 10:48:53]     "pilotErrorCode": 0,
[2025-06-04 10:48:53]     "pilotErrorDiag": "",
[2025-06-04 10:48:53]  *** Listing of results directory ***
[2025-06-04 10:48:53] total 389740
[2025-06-04 10:48:53] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 00:04 pilot3.tar.gz
[2025-06-04 10:48:53] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 00:26 queuedata.json
[2025-06-04 10:48:53] -rwx------. 1 boincer umatlas     37140 Jun  4 00:26 runpilot2-wrapper.sh
[2025-06-04 10:48:53] -rw-r--r--. 1 boincer umatlas       100 Jun  4 09:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 10:48:53] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 09:56 run_atlas
[2025-06-04 10:48:53] -rw-r--r--. 1 boincer umatlas       105 Jun  4 09:56 job.xml
[2025-06-04 10:48:53] -rw-r--r--. 2 boincer umatlas 214688510 Jun  4 09:56 EVNT.45006593._002103.pool.root.1
[2025-06-04 10:48:53] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 09:56 start_atlas.sh
[2025-06-04 10:48:53] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 09:56 shared
[2025-06-04 10:48:53] -rw-r--r--. 2 boincer umatlas    508879 Jun  4 09:56 input.tar.gz
[2025-06-04 10:48:53] -rw-r--r--. 1 boincer umatlas         0 Jun  4 09:56 boinc_lockfile
[2025-06-04 10:48:53] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 09:56 pandaJob.out
[2025-06-04 10:48:53] -rw-------. 1 boincer umatlas    986819 Jun  4 09:56 agis_schedconf.cvmfs.json
[2025-06-04 10:48:53] -rw-------. 1 boincer umatlas   1598969 Jun  4 09:56 agis_ddmendpoints.agis.ALL.json
[2025-06-04 10:48:53] drwx------. 4 boincer umatlas      4096 Jun  4 09:56 pilot3
[2025-06-04 10:48:53] -rw-r--r--. 1 boincer umatlas      6896 Jun  4 10:46 init_data.xml
[2025-06-04 10:48:53] -rw-------. 1 boincer umatlas        95 Jun  4 10:47 pilot_heartbeat.json
[2025-06-04 10:48:53] -rw-r--r--. 1 boincer umatlas       529 Jun  4 10:48 boinc_task_state.xml
[2025-06-04 10:48:53] -rw-------. 1 boincer umatlas 179358861 Jun  4 10:48 HITS.45006595._052510.pool.root.1
[2025-06-04 10:48:53] -rw-------. 1 boincer umatlas      1023 Jun  4 10:48 memory_monitor_summary.json
[2025-06-04 10:48:53] -rw-------. 1 boincer umatlas    281018 Jun  4 10:48 log.45006595._052510.job.log.tgz.1
[2025-06-04 10:48:53] -rw-------. 1 boincer umatlas      7682 Jun  4 10:48 heartbeat.json
[2025-06-04 10:48:53] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 10:48 boinc_mmap_file
[2025-06-04 10:48:53] -rw-r--r--. 1 boincer umatlas        27 Jun  4 10:48 wrapper_checkpoint.txt
[2025-06-04 10:48:53] -rw-------. 1 boincer umatlas      4476 Jun  4 10:48 pilotlog.txt
[2025-06-04 10:48:53] -rw-------. 1 boincer umatlas    325997 Jun  4 10:48 log.45006595._052510.job.log.1
[2025-06-04 10:48:53] -rw-------. 1 boincer umatlas       357 Jun  4 10:48 output.list
[2025-06-04 10:48:53] -rw-r--r--. 1 boincer umatlas       620 Jun  4 10:48 runtime_log
[2025-06-04 10:48:53] -rw-------. 1 boincer umatlas    624640 Jun  4 10:48 result.tar.gz
[2025-06-04 10:48:53] -rw-------. 1 boincer umatlas       651 Jun  4 10:48 wf7KDmysug7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmdEnKDm6ISExn.diag
[2025-06-04 10:48:53] -rw-r--r--. 1 boincer umatlas      8659 Jun  4 10:48 runtime_log.err
[2025-06-04 10:48:53] -rw-r--r--. 1 boincer umatlas     21159 Jun  4 10:48 stderr.txt
[2025-06-04 10:48:53] HITS file was successfully produced:
[2025-06-04 10:48:53] -rw-------. 1 boincer umatlas 179358861 Jun  4 10:48 shared/HITS.pool.root.1
[2025-06-04 10:48:53]  *** Contents of shared directory: ***
[2025-06-04 10:48:53] total 385952
[2025-06-04 10:48:53] -rw-r--r--. 2 boincer umatlas 214688510 Jun  4 09:56 ATLAS.root_0
[2025-06-04 10:48:53] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 09:56 start_atlas.sh
[2025-06-04 10:48:53] -rw-r--r--. 2 boincer umatlas    508879 Jun  4 09:56 input.tar.gz
[2025-06-04 10:48:53] -rw-------. 1 boincer umatlas 179358861 Jun  4 10:48 HITS.pool.root.1
[2025-06-04 10:48:53] -rw-------. 1 boincer umatlas    624640 Jun  4 10:48 result.tar.gz
10:48:55 (3437728): run_atlas exited; CPU time 19815.784117
10:48:55 (3437728): called boinc_finish(0)

</stderr_txt>
]]>

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