Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-04 06:41:50 (12344): Detected: vboxwrapper 26206
2025-06-04 06:41:50 (12344): Detected: BOINC client v8.0.2
2025-06-04 06:41:51 (12344): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-06-04 06:41:51 (12344): Successfully copied 'init_data.xml' to the shared directory.
2025-06-04 06:41:51 (12344): Create VM. (boinc_b17769d362a1a3d8, slot#19)
2025-06-04 06:41:52 (12344): Setting Memory Size for VM. (4800MB)
2025-06-04 06:41:52 (12344): Setting CPU Count for VM. (8)
2025-06-04 06:41:52 (12344): Setting Chipset Options for VM.
2025-06-04 06:41:53 (12344): Setting Graphics Controller Options for VM.
2025-06-04 06:41:53 (12344): Setting Boot Options for VM.
2025-06-04 06:41:53 (12344): Setting Network Configuration for NAT.
2025-06-04 06:41:53 (12344): Enabling VM Network Access.
2025-06-04 06:41:54 (12344): Disabling USB Support for VM.
2025-06-04 06:41:54 (12344): Disabling COM Port Support for VM.
2025-06-04 06:41:54 (12344): Disabling LPT Port Support for VM.
2025-06-04 06:41:54 (12344): Disabling Audio Support for VM.
2025-06-04 06:41:55 (12344): Disabling Clipboard Support for VM.
2025-06-04 06:41:55 (12344): Disabling Drag and Drop Support for VM.
2025-06-04 06:41:55 (12344): Adding storage controller(s) to VM.
2025-06-04 06:41:55 (12344): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-04 06:41:56 (12344): Adding VirtualBox Guest Additions to VM.
2025-06-04 06:41:56 (12344): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-04 06:41:56 (12344): forwarding host port 57308 to guest port 80
2025-06-04 06:41:57 (12344): Enabling remote desktop for VM.
2025-06-04 06:41:57 (12344): Enabling shared directory for VM.
2025-06-04 06:41:58 (12344): Starting VM using VBoxManage interface. (boinc_b17769d362a1a3d8, slot#19)
2025-06-04 06:42:02 (12344): Successfully started VM. (PID = '1636')
2025-06-04 06:42:02 (12344): Reporting VM Process ID to BOINC.
2025-06-04 06:42:02 (12344): Guest Log: BIOS: VirtualBox 7.1.6
2025-06-04 06:42:02 (12344): Guest Log: CPUID EDX: 0x178bfbff
2025-06-04 06:42:02 (12344): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-04 06:42:02 (12344): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-04 06:42:02 (12344): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-04 06:42:02 (12344): Detected: Web Application Enabled (http://localhost:57308)
2025-06-04 06:42:02 (12344): Detected: Remote Desktop Enabled (localhost:57311)
2025-06-04 06:42:02 (12344): Preference change detected
2025-06-04 06:42:02 (12344): Setting CPU throttle for VM. (85%)
2025-06-04 06:42:03 (12344): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 06:42:04 (12344): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-04 06:42:04 (12344): Guest Log: BIOS: Booting from Hard Disk...
2025-06-04 06:42:08 (12344): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-04 06:42:08 (12344): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-04 06:42:08 (12344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-04 06:42:08 (12344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-04 06:42:08 (12344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-04 06:42:08 (12344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-04 06:42:08 (12344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-04 06:42:08 (12344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-04 06:42:08 (12344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-04 06:42:08 (12344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-04 06:42:08 (12344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-04 06:42:08 (12344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-04 06:42:08 (12344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-04 06:42:08 (12344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-04 06:42:08 (12344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-04 06:42:08 (12344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-04 06:42:08 (12344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-04 06:42:08 (12344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-04 06:42:08 (12344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-04 06:42:08 (12344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-04 06:42:08 (12344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-04 06:42:08 (12344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-04 06:42:08 (12344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-04 06:42:08 (12344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-04 06:42:08 (12344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-04 06:42:08 (12344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-04 06:42:08 (12344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-04 06:42:08 (12344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-04 06:42:08 (12344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-04 06:42:08 (12344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-04 06:42:08 (12344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-04 06:42:08 (12344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-04 06:42:16 (12344): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-04 06:42:16 (12344): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-04 06:42:25 (12344): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-04 06:42:25 (12344): Guest Log: 00:00:00.000296 main     Log opened 2025-06-04T06:42:23.981202000Z
2025-06-04 06:42:25 (12344): Guest Log: 00:00:00.000497 main     OS Product: Linux
2025-06-04 06:42:25 (12344): Guest Log: 00:00:00.000546 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-04 06:42:25 (12344): Guest Log: 00:00:00.000586 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-04 06:42:25 (12344): Guest Log: 00:00:00.000625 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-04 06:42:25 (12344): Guest Log: 00:00:00.000626 main     Process ID: 1379
2025-06-04 06:42:25 (12344): Guest Log: 00:00:00.000626 main     Package type: LINUX_64BITS_GENERIC
2025-06-04 06:42:25 (12344): Guest Log: 00:00:00.001813 main     5.2.32 r132073 started. Verbose level = 0
2025-06-04 06:42:26 (12344): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-04 06:42:26 (12344): Guest Log: [INFO] Mounting shared directory
2025-06-04 06:42:26 (12344): Guest Log: [INFO] Checking for init_data.xml
2025-06-04 06:42:32 (12344): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-04 06:42:32 (12344): Guest Log: [INFO] Detected branch: prod
2025-06-04 06:42:32 (12344): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-04 06:42:32 (12344): Guest Log: Copying input files
2025-06-04 06:42:34 (12344): Guest Log: Copied input files into RunAtlas.
2025-06-04 06:42:34 (12344): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-04 06:42:34 (12344): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-04 06:42:34 (12344): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-04 06:42:34 (12344): Guest Log: Further information can be found at the LHC@home message board.
2025-06-04 06:42:35 (12344): Guest Log: 00:00:10.007860 timesync vgsvcTimeSyncWorker: Radical guest time change: 25 211 712 347 000ns (GuestNow=1 749 044 555 699 033 000 ns GuestLast=1 749 019 343 986 686 000 ns fSetTimeLastLoop=true )
2025-06-04 06:42:44 (12344): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-04 06:42:44 (12344): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-04 06:42:44 (12344): Guest Log: 2.6.3.0 1658 0 30144 146781 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-06-04 06:42:48 (12344): Guest Log: copied the webapp to /var/www
2025-06-04 06:42:48 (12344): Guest Log: ATHENA_PROC_NUMBER=8
2025-06-04 06:42:48 (12344): Guest Log: ATHENA_CORE_NUMBER=8
2025-06-04 06:42:48 (12344): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-04 06:42:48 (12344): Guest Log:  *** Starting ATLAS job. (PandaID=6667730020 taskID=44871837) ***
2025-06-04 08:22:08 (12344): Status Report: Elapsed Time: '6000.000000'
2025-06-04 08:22:08 (12344): Status Report: CPU Time: '38474.578125'
2025-06-04 09:26:00 (12344): Guest Log:  *** Job finished ***
2025-06-04 09:26:00 (12344): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-04 09:26:00 (12344): Guest Log: 2025-06-04 16:25:50,637 | INFO     | [data] copytool_out thread has finished
2025-06-04 09:26:00 (12344): Guest Log: 2025-06-04 16:25:50,921 | INFO     | [job] control thread has finished
2025-06-04 09:26:00 (12344): Guest Log: 2025-06-04 16:25:52,429 | INFO     | [data] queue_monitor thread has finished
2025-06-04 09:26:00 (12344): Guest Log: 2025-06-04 16:25:52,780 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139985966462784)>', '<ExcThread(monitor, started 139985382528768)>']
2025-06-04 09:26:00 (12344): Guest Log: 2025-06-04 16:25:53,190 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-04 09:26:00 (12344): Guest Log: 2025-06-04 16:25:53,190 | INFO     | [monitor] control thread has ended
2025-06-04 09:26:00 (12344): Guest Log: 2025-06-04 16:25:57,799 | INFO     | all workflow threads have been joined
2025-06-04 09:26:00 (12344): Guest Log: 2025-06-04 16:25:57,799 | INFO     | end of generic workflow (traces error code: 0)
2025-06-04 09:26:00 (12344): Guest Log: 2025-06-04 16:25:57,799 | INFO     | traces error code: 0
2025-06-04 09:26:00 (12344): Guest Log: 2025-06-04 16:25:57,799 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-04 09:26:00 (12344): Guest Log: 2025-06-04 16:25:57,910 [wrapper] ==== pilot stdout END ====
2025-06-04 09:26:00 (12344): Guest Log: 2025-06-04 16:25:57,917 [wrapper] ==== wrapper stdout RESUME ====
2025-06-04 09:26:00 (12344): Guest Log: 2025-06-04 16:25:57,927 [wrapper] pilotpid: 6007
2025-06-04 09:26:00 (12344): Guest Log: 2025-06-04 16:25:57,935 [wrapper] Pilot exit status: 0
2025-06-04 09:26:00 (12344): Guest Log: 2025-06-04 16:25:58,022 [wrapper] pandaids: 6667730020
2025-06-04 09:26:00 (12344): Guest Log: 2025-06-04 16:25:58,073 [wrapper] cleanup supervisor_pilot  8207 6008
2025-06-04 09:26:00 (12344): Guest Log: 2025-06-04 16:25:58,083 [wrapper] Test setup, not cleaning
2025-06-04 09:26:00 (12344): Guest Log: 2025-06-04 16:25:58,091 [wrapper] apfmon messages muted
2025-06-04 09:26:00 (12344): Guest Log: 2025-06-04 16:25:58,100 [wrapper] ==== wrapper stdout END ====
2025-06-04 09:26:00 (12344): Guest Log: 2025-06-04 16:25:58,109 [wrapper] ==== wrapper stderr END ====
2025-06-04 09:26:00 (12344): Guest Log:  *** Error codes and diagnostics ***
2025-06-04 09:26:00 (12344): Guest Log:     "exeErrorCode": 0,
2025-06-04 09:26:00 (12344): Guest Log:     "exeErrorDiag": "",
2025-06-04 09:26:00 (12344): Guest Log:     "pilotErrorCode": 0,
2025-06-04 09:26:00 (12344): Guest Log:     "pilotErrorDiag": "",
2025-06-04 09:26:00 (12344): Guest Log:  *** Listing of results directory ***
2025-06-04 09:26:00 (12344): Guest Log: total 199736
2025-06-04 09:26:00 (12344): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 27 22:42 pilot3.tar.gz
2025-06-04 09:26:00 (12344): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 27 23:10 queuedata.json
2025-06-04 09:26:00 (12344): Guest Log: -rwx------. 1 atlas atlas     37140 May 27 23:11 runpilot2-wrapper.sh
2025-06-04 09:26:00 (12344): Guest Log: -rwxr-xr-x. 1 atlas atlas     12639 Jun  4 13:42 init_data.xml
2025-06-04 09:26:00 (12344): Guest Log: -rwxr-xr-x. 1 atlas atlas    508878 Jun  4 13:42 input.tar.gz
2025-06-04 09:26:00 (12344): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  4 13:42 start_atlas.sh
2025-06-04 09:26:00 (12344): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  4 13:42 EVNT.44871834._002931.pool.root.1 -> /data/./ATLAS.root_0
2025-06-04 09:26:00 (12344): Guest Log: -rw-r--r--. 1 atlas atlas      2559 Jun  4 13:42 pandaJob.out
2025-06-04 09:26:00 (12344): Guest Log: -rw-------. 1 atlas atlas    986819 Jun  4 13:43 agis_schedconf.cvmfs.json
2025-06-04 09:26:00 (12344): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  4 13:43 agis_ddmendpoints.agis.ALL.json
2025-06-04 09:26:00 (12344): Guest Log: drwx------. 4 atlas atlas      4096 Jun  4 13:43 pilot3
2025-06-04 09:26:00 (12344): Guest Log: -rw-------. 1 atlas atlas 198468584 Jun  4 16:24 HITS.44871837._074832.pool.root.1
2025-06-04 09:26:00 (12344): Guest Log: -rw-------. 1 atlas atlas      1028 Jun  4 16:24 memory_monitor_summary.json
2025-06-04 09:26:00 (12344): Guest Log: -rw-------. 1 atlas atlas    351630 Jun  4 16:25 log.44871837._074832.job.log.tgz.1
2025-06-04 09:26:00 (12344): Guest Log: -rw-------. 1 atlas atlas        95 Jun  4 16:25 pilot_heartbeat.json
2025-06-04 09:26:00 (12344): Guest Log: -rw-------. 1 atlas atlas      7683 Jun  4 16:25 heartbeat.json
2025-06-04 09:26:00 (12344): Guest Log: -rw-------. 1 atlas atlas      4413 Jun  4 16:25 pilotlog.txt
2025-06-04 09:26:00 (12344): Guest Log: -rw-------. 1 atlas atlas    795388 Jun  4 16:25 log.44871837._074832.job.log.1
2025-06-04 09:26:00 (12344): Guest Log: -rw-------. 1 atlas atlas       357 Jun  4 16:25 output.list
2025-06-04 09:26:00 (12344): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  4 16:25 runtime_log
2025-06-04 09:26:00 (12344): Guest Log: -rw-------. 1 atlas atlas   1167360 Jun  4 16:25 result.tar.gz
2025-06-04 09:26:00 (12344): Guest Log: -rw-r--r--. 1 atlas atlas      8567 Jun  4 16:25 runtime_log.err
2025-06-04 09:26:00 (12344): Guest Log: -rw-------. 1 atlas atlas       650 Jun  4 16:25 ofqLDmXdIe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmRZSKDmPigUGo.diag
2025-06-04 09:26:00 (12344): Guest Log: Looking for outputfile HITS.44871837._074832.pool.root.1
2025-06-04 09:26:00 (12344): Guest Log: HITS file was successfully produced
2025-06-04 09:26:00 (12344): Guest Log: -rw-------. 1 atlas atlas 198468584 Jun  4 16:24 /home/atlas/RunAtlas/HITS.44871837._074832.pool.root.1
2025-06-04 09:26:02 (12344): Guest Log: Successfully finished the ATLAS job!
2025-06-04 09:26:02 (12344): Guest Log: Copying the results back to the shared directory!
2025-06-04 09:26:02 (12344): Guest Log:  *** Contents of shared directory: ***
2025-06-04 09:26:02 (12344): Guest Log: total 415040
2025-06-04 09:26:02 (12344): Guest Log: -rwxrwxrwx. 1 root root 224816172 Jun  4 13:41 ATLAS.root_0
2025-06-04 09:26:02 (12344): Guest Log: -rwxrwxrwx. 1 root root 198468584 Jun  4 16:26 HITS.pool.root.1
2025-06-04 09:26:02 (12344): Guest Log: -rwxrwxrwx. 1 root root     12639 Jun  4 13:41 init_data.xml
2025-06-04 09:26:02 (12344): Guest Log: -rwxrwxrwx. 1 root root    508878 Jun  4 13:38 input.tar.gz
2025-06-04 09:26:02 (12344): Guest Log: -rwxrwxrwx. 1 root root   1167360 Jun  4 16:26 result.tar.gz
2025-06-04 09:26:02 (12344): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  4 13:38 start_atlas.sh
2025-06-04 09:26:02 (12344): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-04 09:26:02 (12344): VM Completion File Detected.
2025-06-04 09:26:02 (12344): Powering off VM.
2025-06-04 09:26:03 (12344): Successfully stopped VM.
2025-06-04 09:26:03 (12344): Deregistering VM. (boinc_b17769d362a1a3d8, slot#19)
2025-06-04 09:26:03 (12344): Removing network bandwidth throttle group from VM.
2025-06-04 09:26:03 (12344): Removing VM from VirtualBox.
09:26:08 (12344): called boinc_finish(0)

</stderr_txt>
]]>

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