Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:24:14 (608907): wrapper (7.7.26015): starting
05:24:14 (608907): wrapper: running run_atlas (--nthreads 4)
[2025-06-06 05:24:14] Arguments: --nthreads 4
[2025-06-06 05:24:14] Threads: 4
[2025-06-06 05:24:14] Checking for CVMFS
[2025-06-06 05:24:14] No cvmfs_config command found, will try listing directly
[2025-06-06 05:24:14] CVMFS is ok
[2025-06-06 05:24:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 05:24:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 05:24:14] Further information can be found at the LHC@home message board.
[2025-06-06 05:24:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 05:24:14] Checking for apptainer binary...
[2025-06-06 05:24:14] which: no apptainer in ((null))
[2025-06-06 05:24:14] apptainer is not installed, using version from CVMFS
[2025-06-06 05:24:14] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 05:24:14] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot64/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2025-06-06 05:24:14] apptainer works
[2025-06-06 05:24:14] Set ATHENA_PROC_NUMBER=4
[2025-06-06 05:24:14] Set ATHENA_CORE_NUMBER=4
[2025-06-06 05:24:14] Starting ATLAS job with PandaID=6678390091
[2025-06-06 05:24:14] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot64/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 07:54:02]  *** The last 200 lines of the pilot log: ***
[2025-06-06 07:54:02] 2025-06-06 05:49:21,084 | INFO     | total number of processed events: 400 (read)
[2025-06-06 07:54:02] 2025-06-06 05:49:21,089 | INFO     | executing command: lscpu
[2025-06-06 07:54:02] 2025-06-06 05:49:21,159 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 07:54:02] 2025-06-06 05:49:21,192 | INFO     | number of running child processes to parent process 619862: 1
[2025-06-06 07:54:02] 2025-06-06 05:49:21,193 | INFO     | maximum number of monitored processes: 6
[2025-06-06 07:54:02] 2025-06-06 05:49:23,695 | INFO     | monitor loop #637: job 0:6678390091 is in state 'finished'
[2025-06-06 07:54:02] 2025-06-06 05:49:23,696 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 07:54:02] 2025-06-06 05:49:25,118 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-06 07:54:02] 2025-06-06 05:49:25,119 | INFO     | using path: /scratch/boinc/var/slot64/slots/0/PanDA_Pilot-6678390091/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 07:54:02] 2025-06-06 05:49:25,119 | INFO     | extracted standard info from prmon json
[2025-06-06 07:54:02] 2025-06-06 05:49:25,119 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 07:54:02] 2025-06-06 05:49:25,120 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 07:54:02] 2025-06-06 05:49:25,120 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 07:54:02] 2025-06-06 05:49:25,120 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 07:54:02] 2025-06-06 05:49:25,123 | INFO     | fitting pss+swap vs Time
[2025-06-06 07:54:02] 2025-06-06 05:49:25,124 | INFO     | sum of square deviations: 887813855.5
[2025-06-06 07:54:02] 2025-06-06 05:49:25,124 | INFO     | sum of deviations: -13260950002.999998
[2025-06-06 07:54:02] 2025-06-06 05:49:25,124 | INFO     | mean x: 1749184595.5
[2025-06-06 07:54:02] 2025-06-06 05:49:25,124 | INFO     | mean y: 2380018.3661971833
[2025-06-06 07:54:02] 2025-06-06 05:49:25,124 | INFO     | -- intersect: 26129308904.692047
[2025-06-06 07:54:02] 2025-06-06 05:49:25,124 | INFO     | intersect: 26129308904.692047
[2025-06-06 07:54:02] 2025-06-06 05:49:25,125 | INFO     | chi2: 1.7520837468844521
[2025-06-06 07:54:02] 2025-06-06 05:49:25,125 | INFO     | sum of square deviations: 797291228.0
[2025-06-06 07:54:02] 2025-06-06 05:49:25,125 | INFO     | sum of deviations: -12384997078.999996
[2025-06-06 07:54:02] 2025-06-06 05:49:25,125 | INFO     | mean x: 1749184443.0
[2025-06-06 07:54:02] 2025-06-06 05:49:25,125 | INFO     | mean y: 2381494.7737226277
[2025-06-06 07:54:02] 2025-06-06 05:49:25,125 | INFO     | -- intersect: 27173938707.977173
[2025-06-06 07:54:02] 2025-06-06 05:49:25,125 | INFO     | intersect: 27173938707.977173
[2025-06-06 07:54:02] 2025-06-06 05:49:25,125 | INFO     | chi2: 1.7493493432744731
[2025-06-06 07:54:02] 2025-06-06 05:49:25,126 | INFO     | current chi2=1.7493493432744731 (change=0.15606580534984774 %)
[2025-06-06 07:54:02] 2025-06-06 05:49:25,126 | INFO     | right removable region: 136
[2025-06-06 07:54:02] 2025-06-06 05:49:25,126 | INFO     | sum of square deviations: 797291228.0
[2025-06-06 07:54:02] 2025-06-06 05:49:25,126 | INFO     | sum of deviations: -33842411735.0
[2025-06-06 07:54:02] 2025-06-06 05:49:25,126 | INFO     | mean x: 1749184748.0
[2025-06-06 07:54:02] 2025-06-06 05:49:25,126 | INFO     | mean y: 2414124.094890511
[2025-06-06 07:54:02] 2025-06-06 05:49:25,126 | INFO     | -- intersect: 74249600551.68497
[2025-06-06 07:54:02] 2025-06-06 05:49:25,126 | INFO     | intersect: 74249600551.68497
[2025-06-06 07:54:02] 2025-06-06 05:49:25,126 | INFO     | chi2: 0.19528682271195008
[2025-06-06 07:54:02] 2025-06-06 05:49:25,126 | INFO     | current chi2=0.19528682271195008 (change=88.85402464013444 %)
[2025-06-06 07:54:02] 2025-06-06 05:49:25,127 | INFO     | sum of square deviations: 713140813.0
[2025-06-06 07:54:02] 2025-06-06 05:49:25,127 | INFO     | sum of deviations: -29324559249.5
[2025-06-06 07:54:02] 2025-06-06 05:49:25,127 | INFO     | mean x: 1749184900.5
[2025-06-06 07:54:02] 2025-06-06 05:49:25,127 | INFO     | mean y: 2405884.734848485
[2025-06-06 07:54:02] 2025-06-06 05:49:25,127 | INFO     | -- intersect: 71929401672.93272
[2025-06-06 07:54:02] 2025-06-06 05:49:25,127 | INFO     | intersect: 71929401672.93272
[2025-06-06 07:54:02] 2025-06-06 05:49:25,127 | INFO     | chi2: 0.18944161994318176
[2025-06-06 07:54:02] 2025-06-06 05:49:25,127 | INFO     | current chi2=0.18944161994318176 (change=2.993137318532777 %)
[2025-06-06 07:54:02] 2025-06-06 05:49:25,127 | INFO     | left removable region: 20
[2025-06-06 07:54:02] 2025-06-06 05:49:25,128 | INFO     | sum of square deviations: 483971865.0
[2025-06-06 07:54:02] 2025-06-06 05:49:25,128 | INFO     | sum of deviations: -15974129657.999998
[2025-06-06 07:54:02] 2025-06-06 05:49:25,128 | INFO     | mean x: 1749185022.5
[2025-06-06 07:54:02] 2025-06-06 05:49:25,128 | INFO     | mean y: 2382681.8103448274
[2025-06-06 07:54:02] 2025-06-06 05:49:25,128 | INFO     | -- intersect: 57736541144.19667
[2025-06-06 07:54:02] 2025-06-06 05:49:25,128 | INFO     | intersect: 57736541144.19667
[2025-06-06 07:54:02] 2025-06-06 05:49:25,128 | INFO     | chi2: 0.131756792982575
[2025-06-06 07:54:02] 2025-06-06 05:49:25,128 | INFO     | -- intersect: 57736541144.19667
[2025-06-06 07:54:02] 2025-06-06 05:49:25,128 | INFO     | current memory leak: -33.01 B/s (using 116 data points, chi2=0.13)
[2025-06-06 07:54:02] 2025-06-06 05:49:25,129 | INFO     | ..............................
[2025-06-06 07:54:02] 2025-06-06 05:49:25,129 | INFO     | . Timing measurements:
[2025-06-06 07:54:02] 2025-06-06 05:49:25,129 | INFO     | . get job = 0 s
[2025-06-06 07:54:02] 2025-06-06 05:49:25,129 | INFO     | . initial setup = 1 s
[2025-06-06 07:54:02] 2025-06-06 05:49:25,129 | INFO     | . payload setup = 7 s
[2025-06-06 07:54:02] 2025-06-06 05:49:25,129 | INFO     | . stage-in = 0 s
[2025-06-06 07:54:02] 2025-06-06 05:49:25,129 | INFO     | . payload execution = 8665 s
[2025-06-06 07:54:02] 2025-06-06 05:49:25,129 | INFO     | . stage-out = 0 s
[2025-06-06 07:54:02] 2025-06-06 05:49:25,129 | INFO     | . log creation = 0 s
[2025-06-06 07:54:02] 2025-06-06 05:49:25,129 | INFO     | ..............................
[2025-06-06 07:54:02] 2025-06-06 05:49:25,183 | INFO     | 
[2025-06-06 07:54:02] 2025-06-06 05:49:25,183 | INFO     | job summary report
[2025-06-06 07:54:02] 2025-06-06 05:49:25,183 | INFO     | --------------------------------------------------
[2025-06-06 07:54:02] 2025-06-06 05:49:25,183 | INFO     | PanDA job id: 6678390091
[2025-06-06 07:54:02] 2025-06-06 05:49:25,183 | INFO     | task id: 45006595
[2025-06-06 07:54:02] 2025-06-06 05:49:25,183 | INFO     | errors: (none)
[2025-06-06 07:54:02] 2025-06-06 05:49:25,183 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 07:54:02] 2025-06-06 05:49:25,184 | INFO     | pilot state: finished 
[2025-06-06 07:54:02] 2025-06-06 05:49:25,184 | INFO     | transexitcode: 0
[2025-06-06 07:54:02] 2025-06-06 05:49:25,184 | INFO     | exeerrorcode: 0
[2025-06-06 07:54:02] 2025-06-06 05:49:25,184 | INFO     | exeerrordiag: 
[2025-06-06 07:54:02] 2025-06-06 05:49:25,184 | INFO     | exitcode: 0
[2025-06-06 07:54:02] 2025-06-06 05:49:25,184 | INFO     | exitmsg: OK
[2025-06-06 07:54:02] 2025-06-06 05:49:25,184 | INFO     | cpuconsumptiontime: 33103 s
[2025-06-06 07:54:02] 2025-06-06 05:49:25,184 | INFO     | nevents: 400
[2025-06-06 07:54:02] 2025-06-06 05:49:25,184 | INFO     | neventsw: 0
[2025-06-06 07:54:02] 2025-06-06 05:49:25,184 | INFO     | pid: 619862
[2025-06-06 07:54:02] 2025-06-06 05:49:25,184 | INFO     | pgrp: 619862
[2025-06-06 07:54:02] 2025-06-06 05:49:25,184 | INFO     | corecount: 4
[2025-06-06 07:54:02] 2025-06-06 05:49:25,184 | INFO     | event service: False
[2025-06-06 07:54:02] 2025-06-06 05:49:25,184 | INFO     | sizes: {0: 2397295, 1: 2397295, 5: 2397529, 11: 2397585, 8676: 2425289, 8678: 2434464, 8682: 2434578}
[2025-06-06 07:54:02] 2025-06-06 05:49:25,184 | INFO     | --------------------------------------------------
[2025-06-06 07:54:02] 2025-06-06 05:49:25,184 | INFO     | 
[2025-06-06 07:54:02] 2025-06-06 05:49:25,184 | INFO     | executing command: ls -lF /scratch/boinc/var/slot64/slots/0
[2025-06-06 07:54:02] 2025-06-06 05:49:25,197 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 07:54:02] 2025-06-06 05:49:25,198 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 07:54:02] 2025-06-06 05:49:25,198 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 07:54:02] 2025-06-06 05:49:25,198 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 07:54:02] 2025-06-06 05:49:25,198 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 07:54:02] 2025-06-06 05:49:25,198 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 07:54:02] 2025-06-06 05:49:25,198 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 07:54:02] 2025-06-06 05:49:25,198 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 07:54:02] 2025-06-06 05:49:25,198 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 07:54:02] 2025-06-06 05:49:25,198 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 07:54:02] 2025-06-06 05:49:25,198 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 07:54:02] 2025-06-06 05:49:25,199 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 07:54:02] 2025-06-06 05:49:25,199 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 07:54:02] 2025-06-06 05:49:25,199 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 07:54:02] 2025-06-06 05:49:25,199 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 07:54:02] 2025-06-06 05:49:25,199 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 07:54:02] 2025-06-06 05:49:25,199 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 07:54:02] 2025-06-06 05:49:25,199 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 07:54:02] 2025-06-06 05:49:25,199 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 07:54:02] 2025-06-06 05:49:25,199 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 07:54:02] 2025-06-06 05:49:25,199 | INFO     | job 6678390091 has completed (purged errors)
[2025-06-06 07:54:02] 2025-06-06 05:49:25,199 | INFO     | overall cleanup function is called
[2025-06-06 07:54:02] 2025-06-06 05:49:26,207 | INFO     | --- collectZombieJob: --- 10, [619862]
[2025-06-06 07:54:02] 2025-06-06 05:49:26,207 | INFO     | zombie collector waiting for pid 619862
[2025-06-06 07:54:02] 2025-06-06 05:49:26,207 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 07:54:02] 2025-06-06 05:49:26,208 | INFO     | collected zombie processes
[2025-06-06 07:54:02] 2025-06-06 05:49:26,208 | INFO     | will attempt to kill all subprocesses of pid=619862
[2025-06-06 07:54:02] 2025-06-06 05:49:26,539 | INFO     | process IDs to be killed: [619862] (in reverse order)
[2025-06-06 07:54:02] 2025-06-06 05:49:26,639 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 07:54:02] 2025-06-06 05:49:26,639 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 07:54:02] 2025-06-06 05:49:26,650 | INFO     | did not find any defunct processes belonging to 619862
[2025-06-06 07:54:02] 2025-06-06 05:49:26,660 | INFO     | did not find any defunct processes belonging to 619862
[2025-06-06 07:54:02] 2025-06-06 05:49:26,661 | INFO     | ready for new job
[2025-06-06 07:54:02] 2025-06-06 05:49:26,661 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 07:54:02] 2025-06-06 05:49:26,663 | INFO     | **************************************
[2025-06-06 07:54:02] 2025-06-06 05:49:26,663 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 07:54:02] 2025-06-06 05:49:26,663 | INFO     | **************************************
[2025-06-06 07:54:02] 2025-06-06 05:49:26,663 | INFO     | 
[2025-06-06 07:54:02] 2025-06-06 05:49:26,666 | INFO     | architecture information:
[2025-06-06 07:54:02] 2025-06-06 05:49:26,667 | INFO     | executing command: cat /etc/os-release
[2025-06-06 07:54:02] 2025-06-06 05:49:26,680 | INFO     | cat /etc/os-release:
[2025-06-06 07:54:02] NAME="CentOS Linux"
[2025-06-06 07:54:02] VERSION="7 (Core)"
[2025-06-06 07:54:02] ID="centos"
[2025-06-06 07:54:02] ID_LIKE="rhel fedora"
[2025-06-06 07:54:02] VERSION_ID="7"
[2025-06-06 07:54:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 07:54:02] ANSI_COLOR="0;31"
[2025-06-06 07:54:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 07:54:02] HOME_URL="https://www.centos.org/"
[2025-06-06 07:54:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 07:54:02] 
[2025-06-06 07:54:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 07:54:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 07:54:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 07:54:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 07:54:02] 
[2025-06-06 07:54:02] 2025-06-06 05:49:26,680 | INFO     | **************************************
[2025-06-06 07:54:02] 2025-06-06 05:49:27,183 | INFO     | executing command: df -mP /scratch/boinc/var/slot64/slots/0
[2025-06-06 07:54:02] 2025-06-06 05:49:27,196 | INFO     | sufficient remaining disk space (632483217408 B)
[2025-06-06 07:54:02] 2025-06-06 05:49:27,197 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 07:54:02] 2025-06-06 05:49:27,197 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 07:54:02] 2025-06-06 05:49:27,197 | INFO     | update_server=False
[2025-06-06 07:54:02] 2025-06-06 05:49:27,197 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 07:54:02] 2025-06-06 05:49:27,197 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 07:54:02] 2025-06-06 05:49:27,197 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-06 07:54:02] 2025-06-06 05:49:27,198 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 07:54:02] 2025-06-06 05:49:27,198 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 07:54:02] 2025-06-06 05:49:27,199 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 07:54:02] 2025-06-06 05:49:27,199 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 07:54:02] 2025-06-06 05:49:27,204 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 07:54:02] 2025-06-06 05:49:27,204 | INFO     | aborting loop
[2025-06-06 07:54:02] 2025-06-06 05:49:27,379 | INFO     | all job control threads have been joined
[2025-06-06 07:54:02] 2025-06-06 05:49:27,475 | INFO     | all data control threads have been joined
[2025-06-06 07:54:02] 2025-06-06 05:49:27,579 | INFO     | all payload control threads have been joined
[2025-06-06 07:54:02] 2025-06-06 05:49:28,202 | INFO     | [job] retrieve thread has finished
[2025-06-06 07:54:02] 2025-06-06 05:49:28,205 | INFO     | [payload] validate_post thread has finished
[2025-06-06 07:54:02] 2025-06-06 05:49:28,210 | INFO     | [job] job monitor thread has finished
[2025-06-06 07:54:02] 2025-06-06 05:49:28,289 | INFO     | [data] copytool_in thread has finished
[2025-06-06 07:54:02] 2025-06-06 05:49:28,384 | INFO     | [job] control thread has finished
[2025-06-06 07:54:02] 2025-06-06 05:49:28,448 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 07:54:02] 2025-06-06 05:49:28,480 | INFO     | [data] control thread has finished
[2025-06-06 07:54:02] 2025-06-06 05:49:28,569 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 07:54:02] 2025-06-06 05:49:28,584 | INFO     | [payload] control thread has finished
[2025-06-06 07:54:02] 2025-06-06 05:49:29,200 | INFO     | [data] copytool_out thread has finished
[2025-06-06 07:54:02] 2025-06-06 05:49:29,299 | INFO     | [payload] failed_post thread has finished
[2025-06-06 07:54:02] 2025-06-06 05:49:29,442 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 07:54:02] 2025-06-06 05:49:29,498 | INFO     | [job] validate thread has finished
[2025-06-06 07:54:02] 2025-06-06 05:49:29,633 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 07:54:02] 2025-06-06 05:49:30,194 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 07:54:02] 2025-06-06 05:49:31,199 | INFO     | [job] queue monitor thread has finished
[2025-06-06 07:54:02] 2025-06-06 05:49:31,203 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 07:54:02] 2025-06-06 05:49:31,972 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22463211128640)>', '<ExcThread(monitor, started 22462968321792)>']
[2025-06-06 07:54:02] 2025-06-06 05:49:32,223 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 07:54:02] 2025-06-06 05:49:32,224 | INFO     | [monitor] control thread has ended
[2025-06-06 07:54:02] 2025-06-06 05:49:36,997 | INFO     | all workflow threads have been joined
[2025-06-06 07:54:02] 2025-06-06 05:49:36,998 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 07:54:02] 2025-06-06 05:49:36,998 | INFO     | traces error code: 0
[2025-06-06 07:54:02] 2025-06-06 05:49:36,998 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 07:54:02] 2025-06-06 05:49:37,119 [wrapper] ==== pilot stdout END ====
[2025-06-06 07:54:02] 2025-06-06 05:49:37,121 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 07:54:02] 2025-06-06 05:49:37,124 [wrapper] pilotpid: 612904
[2025-06-06 07:54:02] 2025-06-06 05:49:37,126 [wrapper] Pilot exit status: 0
[2025-06-06 07:54:02] 2025-06-06 05:49:37,135 [wrapper] pandaids: 6678390091
[2025-06-06 07:54:02] 2025-06-06 05:49:37,200 [wrapper] cleanup supervisor_pilot  817882 612905
[2025-06-06 07:54:02] 2025-06-06 05:49:37,203 [wrapper] Test setup, not cleaning
[2025-06-06 07:54:02] 2025-06-06 05:49:37,205 [wrapper] apfmon messages muted
[2025-06-06 07:54:02] 2025-06-06 05:49:37,208 [wrapper] ==== wrapper stdout END ====
[2025-06-06 07:54:02] 2025-06-06 05:49:37,210 [wrapper] ==== wrapper stderr END ====
[2025-06-06 07:54:02]  *** Error codes and diagnostics ***
[2025-06-06 07:54:02]     "exeErrorCode": 0,
[2025-06-06 07:54:02]     "exeErrorDiag": "",
[2025-06-06 07:54:02]     "pilotErrorCode": 0,
[2025-06-06 07:54:02]     "pilotErrorDiag": "",
[2025-06-06 07:54:02]  *** Listing of results directory ***
[2025-06-06 07:54:02] total 389536
[2025-06-06 07:54:02] -rw-r--r-- 1 boinc boinc    495897 Jun  4 07:59 pilot3.tar.gz
[2025-06-06 07:54:02] -rw-r--r-- 1 boinc boinc      5111 Jun  4 08:35 queuedata.json
[2025-06-06 07:54:02] -rwx------ 1 boinc boinc     37140 Jun  4 08:37 runpilot2-wrapper.sh
[2025-06-06 07:54:02] -rw-r--r-- 1 boinc boinc       100 Jun  6 05:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 07:54:02] -rwxr-xr-x 1 boinc boinc      7986 Jun  6 05:24 run_atlas
[2025-06-06 07:54:02] -rw-r--r-- 1 boinc boinc       105 Jun  6 05:24 job.xml
[2025-06-06 07:54:02] -rw-r--r-- 2 boinc boinc 214399723 Jun  6 05:24 EVNT.45006593._000073.pool.root.1
[2025-06-06 07:54:02] -rw-r--r-- 1 boinc boinc      6632 Jun  6 05:24 init_data.xml
[2025-06-06 07:54:02] -rw-r--r-- 2 boinc boinc     15093 Jun  6 05:24 start_atlas.sh
[2025-06-06 07:54:02] drwxrwx--x 2 boinc boinc      4096 Jun  6 05:24 shared
[2025-06-06 07:54:02] -rw-r--r-- 2 boinc boinc    508880 Jun  6 05:24 input.tar.gz
[2025-06-06 07:54:02] -rw-r--r-- 1 boinc boinc         0 Jun  6 05:24 boinc_lockfile
[2025-06-06 07:54:02] -rw-r--r-- 1 boinc boinc      2521 Jun  6 05:24 pandaJob.out
[2025-06-06 07:54:02] -rw------- 1 boinc boinc    987721 Jun  6 05:24 agis_schedconf.cvmfs.json
[2025-06-06 07:54:02] -rw------- 1 boinc boinc   1598969 Jun  6 05:24 agis_ddmendpoints.agis.ALL.json
[2025-06-06 07:54:02] drwx------ 4 boinc boinc      4096 Jun  6 05:24 pilot3
[2025-06-06 07:54:02] -rw------- 1 boinc boinc        95 Jun  6 07:48 pilot_heartbeat.json
[2025-06-06 07:54:02] -rw------- 1 boinc boinc 178431823 Jun  6 07:48 HITS.45006595._054542.pool.root.1
[2025-06-06 07:54:02] -rw-r--r-- 1 boinc boinc       528 Jun  6 07:49 boinc_task_state.xml
[2025-06-06 07:54:02] -rw------- 1 boinc boinc      1033 Jun  6 07:49 memory_monitor_summary.json
[2025-06-06 07:54:02] -rw------- 1 boinc boinc    285869 Jun  6 07:49 log.45006595._054542.job.log.tgz.1
[2025-06-06 07:54:02] -rw------- 1 boinc boinc      7718 Jun  6 07:49 heartbeat.json
[2025-06-06 07:54:02] -rw------- 1 boinc boinc      4486 Jun  6 07:49 pilotlog.txt
[2025-06-06 07:54:02] -rw------- 1 boinc boinc    825089 Jun  6 07:49 log.45006595._054542.job.log.1
[2025-06-06 07:54:02] -rw------- 1 boinc boinc       357 Jun  6 07:49 output.list
[2025-06-06 07:54:02] -rw-r--r-- 1 boinc boinc       620 Jun  6 07:49 runtime_log
[2025-06-06 07:54:02] -rw------- 1 boinc boinc   1126400 Jun  6 07:49 result.tar.gz
[2025-06-06 07:54:02] -rw-r--r-- 1 boinc boinc      9025 Jun  6 07:49 runtime_log.err
[2025-06-06 07:54:02] -rw------- 1 boinc boinc       662 Jun  6 07:49 4RdMDmxvwg7n9Rq4apOajLDm4fhM0noT9bVof3QYDm9saKDmJdsnDm.diag
[2025-06-06 07:54:02] -rw-r--r-- 1 boinc boinc        26 Jun  6 07:53 wrapper_checkpoint.txt
[2025-06-06 07:54:02] -rw-r--r-- 1 boinc boinc      8192 Jun  6 07:54 boinc_mmap_file
[2025-06-06 07:54:02] -rw-r--r-- 1 boinc boinc     20863 Jun  6 07:54 stderr.txt
[2025-06-06 07:54:02] HITS file was successfully produced:
[2025-06-06 07:54:02] -rw------- 1 boinc boinc 178431823 Jun  6 07:48 shared/HITS.pool.root.1
[2025-06-06 07:54:02]  *** Contents of shared directory: ***
[2025-06-06 07:54:02] total 385252
[2025-06-06 07:54:02] -rw-r--r-- 2 boinc boinc 214399723 Jun  6 05:24 ATLAS.root_0
[2025-06-06 07:54:02] -rw-r--r-- 2 boinc boinc     15093 Jun  6 05:24 start_atlas.sh
[2025-06-06 07:54:02] -rw-r--r-- 2 boinc boinc    508880 Jun  6 05:24 input.tar.gz
[2025-06-06 07:54:02] -rw------- 1 boinc boinc 178431823 Jun  6 07:48 HITS.pool.root.1
[2025-06-06 07:54:02] -rw------- 1 boinc boinc   1126400 Jun  6 07:49 result.tar.gz
07:54:04 (608907): run_atlas exited; CPU time 33446.013020
07:54:04 (608907): called boinc_finish(0)

</stderr_txt>
]]>

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