Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:40:05 (2406996): wrapper (7.7.26015): starting
09:40:05 (2406996): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 09:40:05] Arguments: --nthreads 8
[2025-06-04 09:40:05] Threads: 8
[2025-06-04 09:40:05] Checking for CVMFS
[2025-06-04 09:40:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 09:40:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 09:40:05] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 09:40:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 09:40:05] 2.12.6.0 199032 145294 945316 146781 1 773 26122784 32935936 35681 130560 0 699069493 99.688 562453505 20745 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 09:40:05] CVMFS is ok
[2025-06-04 09:40:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 09:40:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 09:40:05] Further information can be found at the LHC@home message board.
[2025-06-04 09:40:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 09:40:05] Checking for apptainer binary...
[2025-06-04 09:40:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 09:40:05] Running /usr/bin/apptainer --version
[2025-06-04 09:40:05] apptainer version 1.4.1-1.el9
[2025-06-04 09:40:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 09:40:06] lc-10-9.aglt2.org
[2025-06-04 09:40:06] apptainer works
[2025-06-04 09:40:06] Set ATHENA_PROC_NUMBER=8
[2025-06-04 09:40:06] Set ATHENA_CORE_NUMBER=8
[2025-06-04 09:40:06] Starting ATLAS job with PandaID=6678392139
[2025-06-04 09:40:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 11:19:07]  *** The last 200 lines of the pilot log: ***
[2025-06-04 11:19:07]  status_code=0
[2025-06-04 11:19:07]  storage_token=
[2025-06-04 11:19:07]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6678392139/log.45006595._055168.job.log.tgz.1
[2025-06-04 11:19:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/05/0c/log.45006595._055168.job.log.tgz.1
[2025-06-04 11:19:07]  workdir=None
[2025-06-04 11:19:07] ]
[2025-06-04 11:19:07] 2025-06-04 15:18:46,843 | INFO     | transferring file log.45006595._055168.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6678392139/log.45006595._055168.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 11:19:07] 2025-06-04 15:18:46,844 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6678392139/log.45006595._055168.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._055168.job
[2025-06-04 11:19:07] 2025-06-04 15:18:46,865 | INFO     | adding to output.list: log.45006595._055168.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/05/0c/log.45006595._055168.job.log.tg
[2025-06-04 11:19:07] 2025-06-04 15:18:46,866 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 11:19:07] 2025-06-04 15:18:46,866 | INFO     | summary of transferred files:
[2025-06-04 11:19:07] 2025-06-04 15:18:46,866 | INFO     |  -- lfn=log.45006595._055168.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 11:19:07] 2025-06-04 15:18:46,866 | INFO     | stage-out finished correctly
[2025-06-04 11:19:07] 2025-06-04 15:18:47,377 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 11:19:07] 2025-06-04 15:18:47,713 | INFO     | PID=2410711 has CPU usage=12.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-04 11:19:07] 2025-06-04 15:18:47,714 | INFO     | .. there are 60 such processes running
[2025-06-04 11:19:07] 2025-06-04 15:18:48,711 | INFO     | job 6678392139 has state=finished
[2025-06-04 11:19:07] 2025-06-04 15:18:48,711 | INFO     | preparing for final server update for job 6678392139 in state='finished'
[2025-06-04 11:19:07] 2025-06-04 15:18:48,711 | INFO     | this job has now completed (state=finished)
[2025-06-04 11:19:07] 2025-06-04 15:18:48,712 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 11:19:07] 2025-06-04 15:18:48,712 | INFO     | log transfer has been attempted: DONE
[2025-06-04 11:19:07] 2025-06-04 15:18:48,712 | INFO     | job 6678392139 has finished - writing final server update
[2025-06-04 11:19:07] 2025-06-04 15:18:48,712 | INFO     | total number of processed events: 400 (read)
[2025-06-04 11:19:07] 2025-06-04 15:18:48,731 | INFO     | executing command: lscpu
[2025-06-04 11:19:07] 2025-06-04 15:18:48,795 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 11:19:07] 2025-06-04 15:18:50,697 | WARNING  | process 2419679 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 11:19:07] 2025-06-04 15:18:50,698 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678392139/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 11:19:07] 2025-06-04 15:18:50,699 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678392139/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 11:19:07] 2025-06-04 15:18:50,700 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3496279 B
[2025-06-04 11:19:07] 2025-06-04 15:18:50,700 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15307 B
[2025-06-04 11:19:07] 2025-06-04 15:18:50,700 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 11:19:07] 2025-06-04 15:18:53,272 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 11:19:07] 2025-06-04 15:18:53,272 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678392139/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 11:19:07] 2025-06-04 15:18:53,273 | INFO     | extracted standard info from prmon json
[2025-06-04 11:19:07] 2025-06-04 15:18:53,273 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 11:19:07] 2025-06-04 15:18:53,273 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 11:19:07] 2025-06-04 15:18:53,274 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 11:19:07] 2025-06-04 15:18:53,274 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 11:19:07] 2025-06-04 15:18:53,276 | INFO     | fitting pss+swap vs Time
[2025-06-04 11:19:07] 2025-06-04 15:18:53,277 | INFO     | sum of square deviations: 226022842.5
[2025-06-04 11:19:07] 2025-06-04 15:18:53,277 | INFO     | sum of deviations: 11710905782.000002
[2025-06-04 11:19:07] 2025-06-04 15:18:53,277 | INFO     | mean x: 1749047465.5
[2025-06-04 11:19:07] 2025-06-04 15:18:53,277 | INFO     | mean y: 2142608.933333333
[2025-06-04 11:19:07] 2025-06-04 15:18:53,277 | INFO     | -- intersect: -90621131791.82286
[2025-06-04 11:19:07] 2025-06-04 15:18:53,278 | INFO     | intersect: -90621131791.82286
[2025-06-04 11:19:07] 2025-06-04 15:18:53,278 | INFO     | chi2: 1.1529716505327583
[2025-06-04 11:19:07] 2025-06-04 15:18:53,278 | INFO     | -- intersect: -90621131791.82286
[2025-06-04 11:19:07] 2025-06-04 15:18:53,278 | INFO     | current memory leak: 51.81 B/s (using 90 data points, chi2=1.15)
[2025-06-04 11:19:07] 2025-06-04 15:18:53,279 | INFO     | ..............................
[2025-06-04 11:19:07] 2025-06-04 15:18:53,279 | INFO     | . Timing measurements:
[2025-06-04 11:19:07] 2025-06-04 15:18:53,279 | INFO     | . get job = 0 s
[2025-06-04 11:19:07] 2025-06-04 15:18:53,279 | INFO     | . initial setup = 3 s
[2025-06-04 11:19:07] 2025-06-04 15:18:53,279 | INFO     | . payload setup = 7 s
[2025-06-04 11:19:07] 2025-06-04 15:18:53,279 | INFO     | . stage-in = 0 s
[2025-06-04 11:19:07] 2025-06-04 15:18:53,279 | INFO     | . payload execution = 5880 s
[2025-06-04 11:19:07] 2025-06-04 15:18:53,279 | INFO     | . stage-out = 0 s
[2025-06-04 11:19:07] 2025-06-04 15:18:53,279 | INFO     | . log creation = 0 s
[2025-06-04 11:19:07] 2025-06-04 15:18:53,279 | INFO     | ..............................
[2025-06-04 11:19:07] 2025-06-04 15:18:53,345 | INFO     | sufficient remaining disk space (96047464448 B)
[2025-06-04 11:19:07] 2025-06-04 15:18:53,361 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-04 11:19:07] 2025-06-04 15:18:53,383 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6678392139: 3803294 B (within 2537553920 B limit)
[2025-06-04 11:19:07] 2025-06-04 15:18:53,384 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6678392139/HITS.45006595._055168.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-04 11:19:07] 2025-06-04 15:18:53,384 | INFO     | total size of present files: 0 B (workdir size: 3803294 B)
[2025-06-04 11:19:07] 2025-06-04 15:18:53,384 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6678392139/HITS.45006595._055168.pool.root.1 since it does not exist
[2025-06-04 11:19:07] 2025-06-04 15:18:53,510 | INFO     | 
[2025-06-04 11:19:07] 2025-06-04 15:18:53,511 | INFO     | job summary report
[2025-06-04 11:19:07] 2025-06-04 15:18:53,511 | INFO     | --------------------------------------------------
[2025-06-04 11:19:07] 2025-06-04 15:18:53,511 | INFO     | PanDA job id: 6678392139
[2025-06-04 11:19:07] 2025-06-04 15:18:53,511 | INFO     | task id: 45006595
[2025-06-04 11:19:07] 2025-06-04 15:18:53,511 | INFO     | errors: (none)
[2025-06-04 11:19:07] 2025-06-04 15:18:53,511 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 11:19:07] 2025-06-04 15:18:53,512 | INFO     | pilot state: finished 
[2025-06-04 11:19:07] 2025-06-04 15:18:53,512 | INFO     | transexitcode: 0
[2025-06-04 11:19:07] 2025-06-04 15:18:53,512 | INFO     | exeerrorcode: 0
[2025-06-04 11:19:07] 2025-06-04 15:18:53,512 | INFO     | exeerrordiag: 
[2025-06-04 11:19:07] 2025-06-04 15:18:53,512 | INFO     | exitcode: 0
[2025-06-04 11:19:07] 2025-06-04 15:18:53,512 | INFO     | exitmsg: OK
[2025-06-04 11:19:07] 2025-06-04 15:18:53,512 | INFO     | cpuconsumptiontime: 37359 s
[2025-06-04 11:19:07] 2025-06-04 15:18:53,512 | INFO     | nevents: 400
[2025-06-04 11:19:07] 2025-06-04 15:18:53,512 | INFO     | neventsw: 0
[2025-06-04 11:19:07] 2025-06-04 15:18:53,512 | INFO     | pid: 2419679
[2025-06-04 11:19:07] 2025-06-04 15:18:53,512 | INFO     | pgrp: 2419679
[2025-06-04 11:19:07] 2025-06-04 15:18:53,512 | INFO     | corecount: 8
[2025-06-04 11:19:07] 2025-06-04 15:18:53,512 | INFO     | event service: False
[2025-06-04 11:19:07] 2025-06-04 15:18:53,512 | INFO     | sizes: {0: 2397342, 5: 2397548, 11: 2397604, 5892: 2424318, 5893: 2433259, 5894: 2433315, 5900: 2433641}
[2025-06-04 11:19:07] 2025-06-04 15:18:53,512 | INFO     | --------------------------------------------------
[2025-06-04 11:19:07] 2025-06-04 15:18:53,513 | INFO     | 
[2025-06-04 11:19:07] 2025-06-04 15:18:53,513 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 11:19:07] 2025-06-04 15:18:53,545 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 11:19:07] 2025-06-04 15:18:53,545 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 11:19:07] 2025-06-04 15:18:53,546 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 11:19:07] 2025-06-04 15:18:53,546 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 11:19:07] 2025-06-04 15:18:53,546 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 11:19:07] 2025-06-04 15:18:53,546 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 11:19:07] 2025-06-04 15:18:53,546 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 11:19:07] 2025-06-04 15:18:53,546 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 11:19:07] 2025-06-04 15:18:53,546 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 11:19:07] 2025-06-04 15:18:53,546 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 11:19:07] 2025-06-04 15:18:53,546 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 11:19:07] 2025-06-04 15:18:53,546 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 11:19:07] 2025-06-04 15:18:53,547 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 11:19:07] 2025-06-04 15:18:53,547 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 11:19:07] 2025-06-04 15:18:53,547 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 11:19:07] 2025-06-04 15:18:53,547 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 11:19:07] 2025-06-04 15:18:53,547 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 11:19:07] 2025-06-04 15:18:53,547 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 11:19:07] 2025-06-04 15:18:53,547 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 11:19:07] 2025-06-04 15:18:53,547 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 11:19:07] 2025-06-04 15:18:53,548 | INFO     | job 6678392139 has completed (purged errors)
[2025-06-04 11:19:07] 2025-06-04 15:18:53,548 | INFO     | overall cleanup function is called
[2025-06-04 11:19:07] 2025-06-04 15:18:53,955 | INFO     | number of running child processes to parent process 2419679: 1
[2025-06-04 11:19:07] 2025-06-04 15:18:53,955 | INFO     | maximum number of monitored processes: 6
[2025-06-04 11:19:07] 2025-06-04 15:18:53,955 | INFO     | aborting job monitoring since job object (job id=6678392139) has expired
[2025-06-04 11:19:07] 2025-06-04 15:18:54,557 | INFO     | --- collectZombieJob: --- 10, [2419679]
[2025-06-04 11:19:07] 2025-06-04 15:18:54,557 | INFO     | zombie collector waiting for pid 2419679
[2025-06-04 11:19:07] 2025-06-04 15:18:54,557 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 11:19:07] 2025-06-04 15:18:54,557 | INFO     | collected zombie processes
[2025-06-04 11:19:07] 2025-06-04 15:18:54,557 | INFO     | will attempt to kill all subprocesses of pid=2419679
[2025-06-04 11:19:07] 2025-06-04 15:18:55,113 | INFO     | process IDs to be killed: [2419679] (in reverse order)
[2025-06-04 11:19:07] 2025-06-04 15:18:55,280 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 11:19:07] 2025-06-04 15:18:55,280 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 11:19:07] 2025-06-04 15:18:55,302 | INFO     | did not find any defunct processes belonging to 2419679
[2025-06-04 11:19:07] 2025-06-04 15:18:55,324 | INFO     | did not find any defunct processes belonging to 2419679
[2025-06-04 11:19:07] 2025-06-04 15:18:55,324 | INFO     | ready for new job
[2025-06-04 11:19:07] 2025-06-04 15:18:55,325 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 11:19:07] 2025-06-04 15:18:55,327 | INFO     | **************************************
[2025-06-04 11:19:07] 2025-06-04 15:18:55,327 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 11:19:07] 2025-06-04 15:18:55,327 | INFO     | **************************************
[2025-06-04 11:19:07] 2025-06-04 15:18:55,327 | INFO     | 
[2025-06-04 11:19:07] 2025-06-04 15:18:55,333 | INFO     | architecture information:
[2025-06-04 11:19:07] 2025-06-04 15:18:55,333 | INFO     | executing command: cat /etc/os-release
[2025-06-04 11:19:07] 2025-06-04 15:18:55,350 | INFO     | cat /etc/os-release:
[2025-06-04 11:19:07] NAME="CentOS Linux"
[2025-06-04 11:19:07] VERSION="7 (Core)"
[2025-06-04 11:19:07] ID="centos"
[2025-06-04 11:19:07] ID_LIKE="rhel fedora"
[2025-06-04 11:19:07] VERSION_ID="7"
[2025-06-04 11:19:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 11:19:07] ANSI_COLOR="0;31"
[2025-06-04 11:19:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 11:19:07] HOME_URL="https://www.centos.org/"
[2025-06-04 11:19:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 11:19:07] 
[2025-06-04 11:19:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 11:19:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 11:19:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 11:19:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 11:19:07] 
[2025-06-04 11:19:07] 2025-06-04 15:18:55,351 | INFO     | **************************************
[2025-06-04 11:19:07] 2025-06-04 15:18:55,853 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 11:19:07] 2025-06-04 15:18:55,872 | INFO     | sufficient remaining disk space (96052707328 B)
[2025-06-04 11:19:07] 2025-06-04 15:18:55,873 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 11:19:07] 2025-06-04 15:18:55,873 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 11:19:07] 2025-06-04 15:18:55,873 | INFO     | update_server=False
[2025-06-04 11:19:07] 2025-06-04 15:18:55,873 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 11:19:07] 2025-06-04 15:18:55,873 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:19:07] 2025-06-04 15:18:55,874 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 11:19:07] 2025-06-04 15:18:55,874 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 11:19:07] 2025-06-04 15:18:55,874 | INFO     | aborting loop
[2025-06-04 11:19:07] 2025-06-04 15:18:55,875 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 11:19:07] 2025-06-04 15:18:55,875 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 11:19:07] 2025-06-04 15:18:55,875 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 11:19:07] 2025-06-04 15:18:56,285 | INFO     | all job control threads have been joined
[2025-06-04 11:19:07] 2025-06-04 15:18:56,576 | INFO     | all data control threads have been joined
[2025-06-04 11:19:07] 2025-06-04 15:18:56,878 | INFO     | [job] retrieve thread has finished
[2025-06-04 11:19:07] 2025-06-04 15:18:56,880 | INFO     | [job] job monitor thread has finished
[2025-06-04 11:19:07] 2025-06-04 15:18:57,105 | INFO     | [payload] failed_post thread has finished
[2025-06-04 11:19:07] 2025-06-04 15:18:57,250 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 11:19:07] 2025-06-04 15:18:57,278 | INFO     | [data] copytool_in thread has finished
[2025-06-04 11:19:07] 2025-06-04 15:18:57,280 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 11:19:07] 2025-06-04 15:18:57,290 | INFO     | [job] control thread has finished
[2025-06-04 11:19:07] 2025-06-04 15:18:57,311 | INFO     | all payload control threads have been joined
[2025-06-04 11:19:07] 2025-06-04 15:18:57,518 | INFO     | [payload] validate_post thread has finished
[2025-06-04 11:19:07] 2025-06-04 15:18:57,582 | INFO     | [data] control thread has finished
[2025-06-04 11:19:07] 2025-06-04 15:18:57,775 | INFO     | [job] validate thread has finished
[2025-06-04 11:19:07] 2025-06-04 15:18:57,880 | INFO     | [data] copytool_out thread has finished
[2025-06-04 11:19:07] 2025-06-04 15:18:57,987 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 11:19:07] 2025-06-04 15:18:58,069 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 11:19:07] 2025-06-04 15:18:58,120 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 11:19:07] 2025-06-04 15:18:58,316 | INFO     | [payload] control thread has finished
[2025-06-04 11:19:07] 2025-06-04 15:18:58,405 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:19:07] 2025-06-04 15:18:59,410 | INFO     | [job] queue monitor thread has finished
[2025-06-04 11:19:07] 2025-06-04 15:19:01,992 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 11:19:07] 2025-06-04 15:19:02,195 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139656160773952)>', '<ExcThread(monitor, started 139655534069504)>']
[2025-06-04 11:19:07] 2025-06-04 15:19:02,910 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 11:19:07] 2025-06-04 15:19:02,910 | INFO     | [monitor] control thread has ended
[2025-06-04 11:19:07] 2025-06-04 15:19:07,221 | INFO     | all workflow threads have been joined
[2025-06-04 11:19:07] 2025-06-04 15:19:07,221 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 11:19:07] 2025-06-04 15:19:07,222 | INFO     | traces error code: 0
[2025-06-04 11:19:07] 2025-06-04 15:19:07,222 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 11:19:07] 2025-06-04 15:19:07,473 [wrapper] ==== pilot stdout END ====
[2025-06-04 11:19:07] 2025-06-04 15:19:07,476 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 11:19:07] 2025-06-04 15:19:07,479 [wrapper] pilotpid: 2410711
[2025-06-04 11:19:07] 2025-06-04 15:19:07,482 [wrapper] Pilot exit status: 0
[2025-06-04 11:19:07] 2025-06-04 15:19:07,493 [wrapper] pandaids: 6678392139
[2025-06-04 11:19:07] 2025-06-04 15:19:07,602 [wrapper] cleanup supervisor_pilot 3444441 2410712
[2025-06-04 11:19:07] 2025-06-04 15:19:07,605 [wrapper] Test setup, not cleaning
[2025-06-04 11:19:07] 2025-06-04 15:19:07,607 [wrapper] apfmon messages muted
[2025-06-04 11:19:07] 2025-06-04 15:19:07,610 [wrapper] ==== wrapper stdout END ====
[2025-06-04 11:19:07] 2025-06-04 15:19:07,613 [wrapper] ==== wrapper stderr END ====
[2025-06-04 11:19:07]  *** Error codes and diagnostics ***
[2025-06-04 11:19:07]     "exeErrorCode": 0,
[2025-06-04 11:19:07]     "exeErrorDiag": "",
[2025-06-04 11:19:07]     "pilotErrorCode": 0,
[2025-06-04 11:19:07]     "pilotErrorDiag": "",
[2025-06-04 11:19:07]  *** Listing of results directory ***
[2025-06-04 11:19:07] total 382576
[2025-06-04 11:19:07] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 03:34 queuedata.json
[2025-06-04 11:19:07] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 03:34 pilot3.tar.gz
[2025-06-04 11:19:07] -rwx------. 1 boincer umatlas     37140 Jun  4 03:36 runpilot2-wrapper.sh
[2025-06-04 11:19:07] -rw-r--r--. 1 boincer umatlas       100 Jun  4 09:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 11:19:07] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 09:40 run_atlas
[2025-06-04 11:19:07] -rw-r--r--. 1 boincer umatlas       105 Jun  4 09:40 job.xml
[2025-06-04 11:19:07] -rw-r--r--. 2 boincer umatlas 213379142 Jun  4 09:40 EVNT.45006593._002207.pool.root.1
[2025-06-04 11:19:07] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 09:40 start_atlas.sh
[2025-06-04 11:19:07] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 09:40 shared
[2025-06-04 11:19:07] -rw-r--r--. 2 boincer umatlas    508886 Jun  4 09:40 input.tar.gz
[2025-06-04 11:19:07] -rw-r--r--. 1 boincer umatlas         0 Jun  4 09:40 boinc_lockfile
[2025-06-04 11:19:07] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 09:40 pandaJob.out
[2025-06-04 11:19:07] -rw-------. 1 boincer umatlas    986819 Jun  4 09:40 agis_schedconf.cvmfs.json
[2025-06-04 11:19:07] -rw-------. 1 boincer umatlas   1598969 Jun  4 09:40 agis_ddmendpoints.agis.ALL.json
[2025-06-04 11:19:07] drwx------. 4 boincer umatlas      4096 Jun  4 09:40 pilot3
[2025-06-04 11:19:07] -rw-r--r--. 1 boincer umatlas      6863 Jun  4 11:11 init_data.xml
[2025-06-04 11:19:07] -rw-------. 1 boincer umatlas 172804830 Jun  4 11:18 HITS.45006595._055168.pool.root.1
[2025-06-04 11:19:07] -rw-r--r--. 1 boincer umatlas       529 Jun  4 11:18 boinc_task_state.xml
[2025-06-04 11:19:07] -rw-------. 1 boincer umatlas      1045 Jun  4 11:18 memory_monitor_summary.json
[2025-06-04 11:19:07] -rw-------. 1 boincer umatlas    321412 Jun  4 11:18 log.45006595._055168.job.log.tgz.1
[2025-06-04 11:19:07] -rw-------. 1 boincer umatlas        95 Jun  4 11:18 pilot_heartbeat.json
[2025-06-04 11:19:07] -rw-------. 1 boincer umatlas      7720 Jun  4 11:18 heartbeat.json
[2025-06-04 11:19:07] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 11:19 boinc_mmap_file
[2025-06-04 11:19:07] -rw-r--r--. 1 boincer umatlas        27 Jun  4 11:19 wrapper_checkpoint.txt
[2025-06-04 11:19:07] -rw-------. 1 boincer umatlas      4476 Jun  4 11:19 pilotlog.txt
[2025-06-04 11:19:07] -rw-------. 1 boincer umatlas    550425 Jun  4 11:19 log.45006595._055168.job.log.1
[2025-06-04 11:19:07] -rw-------. 1 boincer umatlas       357 Jun  4 11:19 output.list
[2025-06-04 11:19:07] -rw-r--r--. 1 boincer umatlas       620 Jun  4 11:19 runtime_log
[2025-06-04 11:19:07] -rw-------. 1 boincer umatlas    890880 Jun  4 11:19 result.tar.gz
[2025-06-04 11:19:07] -rw-r--r--. 1 boincer umatlas      8654 Jun  4 11:19 runtime_log.err
[2025-06-04 11:19:07] -rw-------. 1 boincer umatlas       652 Jun  4 11:19 RGPODmIrxg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmTenKDm3NAOUn.diag
[2025-06-04 11:19:07] -rw-r--r--. 1 boincer umatlas     22416 Jun  4 11:19 stderr.txt
[2025-06-04 11:19:07] HITS file was successfully produced:
[2025-06-04 11:19:07] -rw-------. 1 boincer umatlas 172804830 Jun  4 11:18 shared/HITS.pool.root.1
[2025-06-04 11:19:07]  *** Contents of shared directory: ***
[2025-06-04 11:19:07] total 378528
[2025-06-04 11:19:07] -rw-r--r--. 2 boincer umatlas 213379142 Jun  4 09:40 ATLAS.root_0
[2025-06-04 11:19:07] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 09:40 start_atlas.sh
[2025-06-04 11:19:07] -rw-r--r--. 2 boincer umatlas    508886 Jun  4 09:40 input.tar.gz
[2025-06-04 11:19:07] -rw-------. 1 boincer umatlas 172804830 Jun  4 11:18 HITS.pool.root.1
[2025-06-04 11:19:07] -rw-------. 1 boincer umatlas    890880 Jun  4 11:19 result.tar.gz
11:19:09 (2406996): run_atlas exited; CPU time 37692.972347
11:19:09 (2406996): called boinc_finish(0)

</stderr_txt>
]]>

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