Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-04 15:42:43 (3631464): Detected: vboxwrapper 26206
2025-06-04 15:42:43 (3631464): Detected: BOINC client v8.0.2
2025-06-04 15:42:43 (3631464): Detected: VirtualBox VboxManage Interface (Version: 7.0.20)
2025-06-04 15:42:43 (3631464): Successfully copied 'init_data.xml' to the shared directory.
2025-06-04 15:42:43 (3631464): Create VM. (boinc_600354d559bed6d3, slot#9)
2025-06-04 15:42:44 (3631464): Setting Memory Size for VM. (4500MB)
2025-06-04 15:42:44 (3631464): Setting CPU Count for VM. (5)
2025-06-04 15:42:44 (3631464): Setting Chipset Options for VM.
2025-06-04 15:42:44 (3631464): Setting Graphics Controller Options for VM.
2025-06-04 15:42:44 (3631464): Setting Boot Options for VM.
2025-06-04 15:42:44 (3631464): Setting Network Configuration for NAT.
2025-06-04 15:42:44 (3631464): Enabling VM Network Access.
2025-06-04 15:42:44 (3631464): Disabling USB Support for VM.
2025-06-04 15:42:44 (3631464): Disabling COM Port Support for VM.
2025-06-04 15:42:44 (3631464): Disabling LPT Port Support for VM.
2025-06-04 15:42:44 (3631464): Disabling Audio Support for VM.
2025-06-04 15:42:45 (3631464): Disabling Clipboard Support for VM.
2025-06-04 15:42:45 (3631464): Disabling Drag and Drop Support for VM.
2025-06-04 15:42:45 (3631464): Adding storage controller(s) to VM.
2025-06-04 15:42:45 (3631464): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-04 15:42:46 (3631464): Adding VirtualBox Guest Additions to VM.
2025-06-04 15:42:47 (3631464): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-04 15:42:47 (3631464): forwarding host port 36085 to guest port 80
2025-06-04 15:42:47 (3631464): Enabling remote desktop for VM.
2025-06-04 15:42:47 (3631464): Required extension pack not installed, remote desktop not enabled.
2025-06-04 15:42:47 (3631464): Enabling shared directory for VM.
2025-06-04 15:42:47 (3631464): Starting VM using VBoxManage interface. (boinc_600354d559bed6d3, slot#9)
2025-06-04 15:42:48 (3631464): Successfully started VM. (PID = '3632046')
2025-06-04 15:42:48 (3631464): Reporting VM Process ID to BOINC.
2025-06-04 15:42:48 (3631464): Guest Log: BIOS: VirtualBox 7.0.20
2025-06-04 15:42:48 (3631464): Guest Log: CPUID EDX: 0x178bfbff
2025-06-04 15:42:48 (3631464): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-04 15:42:48 (3631464): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-04 15:42:48 (3631464): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-04 15:42:48 (3631464): Detected: Web Application Enabled (http://localhost:36085)
2025-06-04 15:42:48 (3631464): Preference change detected
2025-06-04 15:42:48 (3631464): Setting CPU throttle for VM. (100%)
2025-06-04 15:42:49 (3631464): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 15:42:50 (3631464): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-04 15:42:50 (3631464): Guest Log: BIOS: Booting from Hard Disk...
2025-06-04 15:42:53 (3631464): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-04 15:42:53 (3631464): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-04 15:42:53 (3631464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-04 15:42:53 (3631464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-04 15:42:53 (3631464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-04 15:42:53 (3631464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-04 15:42:53 (3631464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-04 15:42:53 (3631464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-04 15:42:53 (3631464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-04 15:42:53 (3631464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-04 15:42:53 (3631464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-04 15:42:53 (3631464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-04 15:42:53 (3631464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-04 15:42:53 (3631464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-04 15:42:53 (3631464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-04 15:42:53 (3631464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-04 15:42:53 (3631464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-04 15:42:53 (3631464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-04 15:42:53 (3631464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-04 15:42:53 (3631464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-04 15:42:53 (3631464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-04 15:42:53 (3631464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-04 15:42:53 (3631464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-04 15:42:53 (3631464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-04 15:42:53 (3631464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-04 15:42:53 (3631464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-04 15:42:53 (3631464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-04 15:42:53 (3631464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-04 15:42:53 (3631464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-04 15:42:53 (3631464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-04 15:42:53 (3631464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-04 15:42:53 (3631464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-04 15:43:00 (3631464): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-04 15:43:00 (3631464): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-04 15:43:07 (3631464): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-04 15:43:07 (3631464): Guest Log: 00:00:00.000150 main     Log opened 2025-06-04T13:43:05.022704000Z
2025-06-04 15:43:07 (3631464): Guest Log: 00:00:00.000226 main     OS Product: Linux
2025-06-04 15:43:07 (3631464): Guest Log: 00:00:00.000247 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-04 15:43:07 (3631464): Guest Log: 00:00:00.000263 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-04 15:43:07 (3631464): Guest Log: 00:00:00.000278 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-04 15:43:07 (3631464): Guest Log: 00:00:00.000279 main     Process ID: 1336
2025-06-04 15:43:07 (3631464): Guest Log: 00:00:00.000280 main     Package type: LINUX_64BITS_GENERIC
2025-06-04 15:43:07 (3631464): Guest Log: 00:00:00.002049 main     5.2.32 r132073 started. Verbose level = 0
2025-06-04 15:43:07 (3631464): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-04 15:43:07 (3631464): Guest Log: [INFO] Mounting shared directory
2025-06-04 15:43:07 (3631464): Guest Log: [INFO] Checking for init_data.xml
2025-06-04 15:43:10 (3631464): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-04 15:43:10 (3631464): Guest Log: [INFO] Detected branch: prod
2025-06-04 15:43:11 (3631464): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-04 15:43:11 (3631464): Guest Log: Copying input files
2025-06-04 15:43:12 (3631464): Guest Log: Copied input files into RunAtlas.
2025-06-04 15:43:12 (3631464): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-04 15:43:12 (3631464): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-04 15:43:12 (3631464): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-04 15:43:12 (3631464): Guest Log: Further information can be found at the LHC@home message board.
2025-06-04 15:43:27 (3631464): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-04 15:43:28 (3631464): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-04 15:43:28 (3631464): Guest Log: 2.6.3.0 1611 0 30164 146781 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-06-04 15:43:29 (3631464): Guest Log: copied the webapp to /var/www
2025-06-04 15:43:29 (3631464): Guest Log: ATHENA_PROC_NUMBER=5
2025-06-04 15:43:29 (3631464): Guest Log: ATHENA_CORE_NUMBER=5
2025-06-04 15:43:29 (3631464): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-04 15:43:29 (3631464): Guest Log:  *** Starting ATLAS job. (PandaID=6668046644 taskID=44871837) ***
2025-06-04 15:48:04 (3631464): VM state change detected. (old = 'running', new = 'paused')
2025-06-04 15:48:24 (3631464): VM state change detected. (old = 'paused', new = 'running')
2025-06-04 16:06:49 (3631464): VM state change detected. (old = 'running', new = 'paused')
2025-06-04 16:07:10 (3631464): VM state change detected. (old = 'paused', new = 'running')
2025-06-04 16:51:41 (3631464): VM state change detected. (old = 'running', new = 'paused')
2025-06-04 16:52:01 (3631464): VM state change detected. (old = 'paused', new = 'running')
2025-06-04 17:22:52 (3631464): Status Report: Elapsed Time: '6000.000000'
2025-06-04 17:22:52 (3631464): Status Report: CPU Time: '26781.660000'
2025-06-04 17:34:32 (3631464): VM state change detected. (old = 'running', new = 'paused')
2025-06-04 17:34:52 (3631464): VM state change detected. (old = 'paused', new = 'running')
2025-06-04 18:37:48 (3631464): VM state change detected. (old = 'running', new = 'paused')
2025-06-04 18:38:09 (3631464): VM state change detected. (old = 'paused', new = 'running')
2025-06-04 18:59:15 (3631464): VM state change detected. (old = 'running', new = 'paused')
2025-06-04 18:59:34 (3631464): VM state change detected. (old = 'paused', new = 'running')
2025-06-04 19:02:56 (3631464): Status Report: Elapsed Time: '12000.000000'
2025-06-04 19:02:56 (3631464): Status Report: CPU Time: '55764.310000'
2025-06-04 19:32:34 (3631464): VM state change detected. (old = 'running', new = 'paused')
2025-06-04 19:32:53 (3631464): VM state change detected. (old = 'paused', new = 'running')
2025-06-04 20:02:24 (3631464): Guest Log:  *** Job finished ***
2025-06-04 20:02:24 (3631464): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-04 20:02:24 (3631464): Guest Log: 2025-06-04 17:59:54,020 | INFO     | [data] queue_monitor thread has finished
2025-06-04 20:02:24 (3631464): Guest Log: 2025-06-04 17:59:59,168 | INFO     | job.realtimelogging is not enabled
2025-06-04 20:02:24 (3631464): Guest Log: 2025-06-04 18:00:00,170 | INFO     | [payload] run_realtimelog thread has finished
2025-06-04 20:02:24 (3631464): Guest Log: 2025-06-04 18:00:00,184 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140638158194496)>', '<ExcThread(monitor, started 140637479360256)>']
2025-06-04 20:02:24 (3631464): Guest Log: 2025-06-04 18:00:01,138 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-04 20:02:24 (3631464): Guest Log: 2025-06-04 18:00:01,139 | INFO     | [monitor] control thread has ended
2025-06-04 20:02:24 (3631464): Guest Log: 2025-06-04 18:00:05,198 | INFO     | all workflow threads have been joined
2025-06-04 20:02:24 (3631464): Guest Log: 2025-06-04 18:00:05,198 | INFO     | end of generic workflow (traces error code: 0)
2025-06-04 20:02:24 (3631464): Guest Log: 2025-06-04 18:00:05,198 | INFO     | traces error code: 0
2025-06-04 20:02:24 (3631464): Guest Log: 2025-06-04 18:00:05,198 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-04 20:02:24 (3631464): Guest Log: 2025-06-04 18:00:05,316 [wrapper] ==== pilot stdout END ====
2025-06-04 20:02:24 (3631464): Guest Log: 2025-06-04 18:00:05,322 [wrapper] ==== wrapper stdout RESUME ====
2025-06-04 20:02:24 (3631464): Guest Log: 2025-06-04 18:00:05,331 [wrapper] pilotpid: 5929
2025-06-04 20:02:24 (3631464): Guest Log: 2025-06-04 18:00:05,341 [wrapper] Pilot exit status: 0
2025-06-04 20:02:24 (3631464): Guest Log: 2025-06-04 18:00:05,460 [wrapper] pandaids: 6668046644
2025-06-04 20:02:24 (3631464): Guest Log: 2025-06-04 18:00:05,513 [wrapper] cleanup supervisor_pilot 18561 5930
2025-06-04 20:02:24 (3631464): Guest Log: 2025-06-04 18:00:05,522 [wrapper] Test setup, not cleaning
2025-06-04 20:02:24 (3631464): Guest Log: 2025-06-04 18:00:05,528 [wrapper] apfmon messages muted
2025-06-04 20:02:24 (3631464): Guest Log: 2025-06-04 18:00:05,533 [wrapper] ==== wrapper stdout END ====
2025-06-04 20:02:24 (3631464): Guest Log: 2025-06-04 18:00:05,537 [wrapper] ==== wrapper stderr END ====
2025-06-04 20:02:24 (3631464): Guest Log:  *** Error codes and diagnostics ***
2025-06-04 20:02:24 (3631464): Guest Log:     "exeErrorCode": 0,
2025-06-04 20:02:24 (3631464): Guest Log:     "exeErrorDiag": "",
2025-06-04 20:02:24 (3631464): Guest Log:     "pilotErrorCode": 0,
2025-06-04 20:02:24 (3631464): Guest Log:     "pilotErrorDiag": "",
2025-06-04 20:02:24 (3631464): Guest Log:  *** Listing of results directory ***
2025-06-04 20:02:24 (3631464): Guest Log: total 195816
2025-06-04 20:02:24 (3631464): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 28 04:31 pilot3.tar.gz
2025-06-04 20:02:24 (3631464): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 28 05:25 queuedata.json
2025-06-04 20:02:24 (3631464): Guest Log: -rwx------. 1 atlas atlas     37140 May 28 05:27 runpilot2-wrapper.sh
2025-06-04 20:02:24 (3631464): Guest Log: -rw-r--r--. 1 atlas atlas     15093 Jun  4 13:43 start_atlas.sh
2025-06-04 20:02:24 (3631464): Guest Log: -rw-r--r--. 1 atlas atlas    508879 Jun  4 13:43 input.tar.gz
2025-06-04 20:02:24 (3631464): Guest Log: -rw-r--r--. 1 atlas atlas      9411 Jun  4 13:43 init_data.xml
2025-06-04 20:02:24 (3631464): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  4 13:43 EVNT.44871834._003094.pool.root.1 -> /data/./ATLAS.root_0
2025-06-04 20:02:24 (3631464): Guest Log: -rw-r--r--. 1 atlas atlas      2558 Jun  4 13:43 pandaJob.out
2025-06-04 20:02:24 (3631464): Guest Log: -rw-------. 1 atlas atlas    986819 Jun  4 13:44 agis_schedconf.cvmfs.json
2025-06-04 20:02:24 (3631464): Guest Log: drwx------. 4 atlas atlas      4096 Jun  4 13:44 pilot3
2025-06-04 20:02:24 (3631464): Guest Log: -rw-------. 1 atlas atlas 193574805 Jun  4 17:59 HITS.44871837._079170.pool.root.1
2025-06-04 20:02:24 (3631464): Guest Log: -rw-------. 1 atlas atlas      1034 Jun  4 17:59 memory_monitor_summary.json
2025-06-04 20:02:24 (3631464): Guest Log: -rw-------. 1 atlas atlas        95 Jun  4 17:59 pilot_heartbeat.json
2025-06-04 20:02:24 (3631464): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  4 17:59 agis_ddmendpoints.agis.ALL.json
2025-06-04 20:02:24 (3631464): Guest Log: -rw-------. 1 atlas atlas    354593 Jun  4 17:59 log.44871837._079170.job.log.tgz.1
2025-06-04 20:02:24 (3631464): Guest Log: -rw-------. 1 atlas atlas      7730 Jun  4 17:59 heartbeat.json
2025-06-04 20:02:24 (3631464): Guest Log: -rw-------. 1 atlas atlas      4801 Jun  4 18:00 pilotlog.txt
2025-06-04 20:02:24 (3631464): Guest Log: -rw-------. 1 atlas atlas   1233674 Jun  4 18:00 log.44871837._079170.job.log.1
2025-06-04 20:02:24 (3631464): Guest Log: -rw-------. 1 atlas atlas       357 Jun  4 18:00 output.list
2025-06-04 20:02:24 (3631464): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  4 18:00 runtime_log
2025-06-04 20:02:24 (3631464): Guest Log: -rw-------. 1 atlas atlas   1607680 Jun  4 18:00 result.tar.gz
2025-06-04 20:02:24 (3631464): Guest Log: -rw-------. 1 atlas atlas       661 Jun  4 18:00 vWKKDm2UOe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmFySKDmcO76ln.diag
2025-06-04 20:02:24 (3631464): Guest Log: -rw-r--r--. 1 atlas atlas      8602 Jun  4 18:00 runtime_log.err
2025-06-04 20:02:24 (3631464): Guest Log: Looking for outputfile HITS.44871837._079170.pool.root.1
2025-06-04 20:02:24 (3631464): Guest Log: HITS file was successfully produced
2025-06-04 20:02:24 (3631464): Guest Log: -rw-------. 1 atlas atlas 193574805 Jun  4 17:59 /home/atlas/RunAtlas/HITS.44871837._079170.pool.root.1
2025-06-04 20:02:24 (3631464): Guest Log: Successfully finished the ATLAS job!
2025-06-04 20:02:24 (3631464): Guest Log: Copying the results back to the shared directory!
2025-06-04 20:02:24 (3631464): Guest Log:  *** Contents of shared directory: ***
2025-06-04 20:02:24 (3631464): Guest Log: total 220824
2025-06-04 20:02:24 (3631464): Guest Log: -rw-r--r--. 1 root root 223965397 Jun  4 13:42 ATLAS.root_0
2025-06-04 20:02:24 (3631464): Guest Log: -rw-r--r--. 1 root root      9411 Jun  4 13:42 init_data.xml
2025-06-04 20:02:24 (3631464): Guest Log: -rw-r--r--. 1 root root    508879 Jun  4 13:42 input.tar.gz
2025-06-04 20:02:24 (3631464): Guest Log: -rw-r--r--. 1 root root   1607680 Jun  4  2025 result.tar.gz
2025-06-04 20:02:24 (3631464): Guest Log: -rw-r--r--. 1 root root     15093 Jun  4 13:42 start_atlas.sh
2025-06-04 20:02:24 (3631464): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-04 20:02:24 (3631464): VM Completion File Detected.
2025-06-04 20:02:24 (3631464): Powering off VM.
2025-06-04 20:02:24 (3631464): Successfully stopped VM.
2025-06-04 20:02:24 (3631464): Deregistering VM. (boinc_600354d559bed6d3, slot#9)
2025-06-04 20:02:24 (3631464): Removing network bandwidth throttle group from VM.
2025-06-04 20:02:24 (3631464): Removing VM from VirtualBox.
20:02:29 (3631464): called boinc_finish(0)

</stderr_txt>
]]>

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