Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:48:10 (23508): wrapper (7.7.26015): starting
01:48:10 (23508): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 01:48:10] Arguments: --nthreads 8
[2025-06-05 01:48:10] Threads: 8
[2025-06-05 01:48:10] Checking for CVMFS
[2025-06-05 01:48:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 01:48:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 01:48:12] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 01:48:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 01:48:13] 2.11.2.0 4277 33876 97736 146798 3 255 19235512 25165825 3856 130560 0 17171896 99.779 18791091 2186 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 01:48:13] CVMFS is ok
[2025-06-05 01:48:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 01:48:13] Checking for apptainer binary...
[2025-06-05 01:48:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 01:48:13] Running /usr/bin/apptainer --version
[2025-06-05 01:48:13] apptainer version 1.3.2-1.el7
[2025-06-05 01:48:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 02:18:27] cg-vwn279.simple-grid.lan
[2025-06-05 02:18:27] apptainer works
[2025-06-05 02:18:27] Set ATHENA_PROC_NUMBER=8
[2025-06-05 02:18:27] Set ATHENA_CORE_NUMBER=8
[2025-06-05 02:18:28] Starting ATLAS job with PandaID=6667885959
[2025-06-05 02:18:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 09:28:14]  *** The last 200 lines of the pilot log: ***
[2025-06-05 09:28:14] 2025-06-05 05:51:13,577 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 09:28:14] 2025-06-05 05:51:13,577 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 09:28:14] 2025-06-05 05:51:13,577 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 09:28:14] 2025-06-05 05:51:13,583 | INFO     | fitting pss+swap vs Time
[2025-06-05 09:28:14] 2025-06-05 05:51:13,584 | INFO     | sum of square deviations: 9691828230.0
[2025-06-05 09:28:14] 2025-06-05 05:51:13,587 | INFO     | sum of deviations: 84854278505.99997
[2025-06-05 09:28:14] 2025-06-05 05:51:13,588 | INFO     | mean x: 1749092958.0
[2025-06-05 09:28:14] 2025-06-05 05:51:13,588 | INFO     | mean y: 2462667.0253968253
[2025-06-05 09:28:14] 2025-06-05 05:51:13,588 | INFO     | -- intersect: -15311265297.282047
[2025-06-05 09:28:14] 2025-06-05 05:51:13,588 | INFO     | intersect: -15311265297.282047
[2025-06-05 09:28:14] 2025-06-05 05:51:13,588 | INFO     | chi2: 7.251387515008769
[2025-06-05 09:28:14] 2025-06-05 05:51:13,589 | INFO     | sum of square deviations: 9237596457.5
[2025-06-05 09:28:14] 2025-06-05 05:51:13,592 | INFO     | sum of deviations: 104226368664.49998
[2025-06-05 09:28:14] 2025-06-05 05:51:13,592 | INFO     | mean x: 1749092805.5
[2025-06-05 09:28:14] 2025-06-05 05:51:13,592 | INFO     | mean y: 2469080.6612903224
[2025-06-05 09:28:14] 2025-06-05 05:51:13,592 | INFO     | -- intersect: -19732273870.407654
[2025-06-05 09:28:14] 2025-06-05 05:51:13,592 | INFO     | intersect: -19732273870.407654
[2025-06-05 09:28:14] 2025-06-05 05:51:13,593 | INFO     | chi2: 6.531875520679955
[2025-06-05 09:28:14] 2025-06-05 05:51:13,593 | INFO     | current chi2=6.531875520679955 (change=9.922404406599204 %)
[2025-06-05 09:28:14] 2025-06-05 05:51:13,593 | INFO     | right removable region: 309
[2025-06-05 09:28:14] 2025-06-05 05:51:13,601 | INFO     | sum of square deviations: 9237596457.5
[2025-06-05 09:28:14] 2025-06-05 05:51:13,604 | INFO     | sum of deviations: -25196983818.49998
[2025-06-05 09:28:14] 2025-06-05 05:51:13,604 | INFO     | mean x: 1749093110.5
[2025-06-05 09:28:14] 2025-06-05 05:51:13,604 | INFO     | mean y: 2499591.0548387095
[2025-06-05 09:28:14] 2025-06-05 05:51:13,605 | INFO     | -- intersect: 4773423608.474584
[2025-06-05 09:28:14] 2025-06-05 05:51:13,605 | INFO     | intersect: 4773423608.474584
[2025-06-05 09:28:14] 2025-06-05 05:51:13,605 | INFO     | chi2: 2.48628894474675
[2025-06-05 09:28:14] 2025-06-05 05:51:13,605 | INFO     | current chi2=2.48628894474675 (change=65.71292129126071 %)
[2025-06-05 09:28:14] 2025-06-05 05:51:13,606 | INFO     | sum of square deviations: 8797783560.0
[2025-06-05 09:28:14] 2025-06-05 05:51:13,609 | INFO     | sum of deviations: -80210409323.0
[2025-06-05 09:28:14] 2025-06-05 05:51:13,609 | INFO     | mean x: 1749093263.0
[2025-06-05 09:28:14] 2025-06-05 05:51:13,609 | INFO     | mean y: 2518580.013114754
[2025-06-05 09:28:14] 2025-06-05 05:51:13,609 | INFO     | -- intersect: 15949203971.001719
[2025-06-05 09:28:14] 2025-06-05 05:51:13,609 | INFO     | intersect: 15949203971.001719
[2025-06-05 09:28:14] 2025-06-05 05:51:13,610 | INFO     | chi2: 1.038878221072458
[2025-06-05 09:28:14] 2025-06-05 05:51:13,610 | INFO     | current chi2=1.038878221072458 (change=58.21570846512063 %)
[2025-06-05 09:28:14] 2025-06-05 05:51:13,610 | INFO     | sum of square deviations: 8372156975.0
[2025-06-05 09:28:14] 2025-06-05 05:51:13,613 | INFO     | sum of deviations: -78362969880.49997
[2025-06-05 09:28:14] 2025-06-05 05:51:13,613 | INFO     | mean x: 1749093415.5
[2025-06-05 09:28:14] 2025-06-05 05:51:13,613 | INFO     | mean y: 2517895.1033333335
[2025-06-05 09:28:14] 2025-06-05 05:51:13,613 | INFO     | -- intersect: 16373944642.86893
[2025-06-05 09:28:14] 2025-06-05 05:51:13,613 | INFO     | intersect: 16373944642.86893
[2025-06-05 09:28:14] 2025-06-05 05:51:13,614 | INFO     | chi2: 1.0187478878012663
[2025-06-05 09:28:14] 2025-06-05 05:51:13,614 | INFO     | current chi2=1.0187478878012663 (change=1.937699035639685 %)
[2025-06-05 09:28:14] 2025-06-05 05:51:13,614 | INFO     | left removable region: 30
[2025-06-05 09:28:14] 2025-06-05 05:51:13,615 | INFO     | sum of square deviations: 6734191380.0
[2025-06-05 09:28:14] 2025-06-05 05:51:13,617 | INFO     | sum of deviations: -27839003709.999992
[2025-06-05 09:28:14] 2025-06-05 05:51:13,617 | INFO     | mean x: 1749093690.0
[2025-06-05 09:28:14] 2025-06-05 05:51:13,617 | INFO     | mean y: 2513860.806451613
[2025-06-05 09:28:14] 2025-06-05 05:51:13,617 | INFO     | -- intersect: 7233229915.247953
[2025-06-05 09:28:14] 2025-06-05 05:51:13,617 | INFO     | intersect: 7233229915.247953
[2025-06-05 09:28:14] 2025-06-05 05:51:13,618 | INFO     | chi2: 0.16647064259455938
[2025-06-05 09:28:14] 2025-06-05 05:51:13,618 | INFO     | -- intersect: 7233229915.247953
[2025-06-05 09:28:14] 2025-06-05 05:51:13,618 | INFO     | current memory leak: -4.13 B/s (using 279 data points, chi2=0.17)
[2025-06-05 09:28:14] 2025-06-05 05:51:13,619 | INFO     | ..............................
[2025-06-05 09:28:14] 2025-06-05 05:51:13,619 | INFO     | . Timing measurements:
[2025-06-05 09:28:14] 2025-06-05 05:51:13,619 | INFO     | . get job = 0 s
[2025-06-05 09:28:14] 2025-06-05 05:51:13,620 | INFO     | . initial setup = 6 s
[2025-06-05 09:28:14] 2025-06-05 05:51:13,620 | INFO     | . payload setup = 159 s
[2025-06-05 09:28:14] 2025-06-05 05:51:13,620 | INFO     | . stage-in = 0 s
[2025-06-05 09:28:14] 2025-06-05 05:51:13,620 | INFO     | . payload execution = 19347 s
[2025-06-05 09:28:14] 2025-06-05 05:51:13,620 | INFO     | . stage-out = 3 s
[2025-06-05 09:28:14] 2025-06-05 05:51:13,620 | INFO     | . log creation = 1 s
[2025-06-05 09:28:14] 2025-06-05 05:51:13,620 | INFO     | ..............................
[2025-06-05 09:28:14] 2025-06-05 05:51:14,154 | INFO     | 
[2025-06-05 09:28:14] 2025-06-05 05:51:14,154 | INFO     | job summary report
[2025-06-05 09:28:14] 2025-06-05 05:51:14,154 | INFO     | --------------------------------------------------
[2025-06-05 09:28:14] 2025-06-05 05:51:14,154 | INFO     | PanDA job id: 6667885959
[2025-06-05 09:28:14] 2025-06-05 05:51:14,154 | INFO     | task id: 44871837
[2025-06-05 09:28:14] 2025-06-05 05:51:14,154 | INFO     | errors: (none)
[2025-06-05 09:28:14] 2025-06-05 05:51:14,155 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 09:28:14] 2025-06-05 05:51:14,155 | INFO     | pilot state: finished 
[2025-06-05 09:28:14] 2025-06-05 05:51:14,155 | INFO     | transexitcode: 0
[2025-06-05 09:28:14] 2025-06-05 05:51:14,155 | INFO     | exeerrorcode: 0
[2025-06-05 09:28:14] 2025-06-05 05:51:14,155 | INFO     | exeerrordiag: 
[2025-06-05 09:28:14] 2025-06-05 05:51:14,155 | INFO     | exitcode: 0
[2025-06-05 09:28:14] 2025-06-05 05:51:14,155 | INFO     | exitmsg: OK
[2025-06-05 09:28:14] 2025-06-05 05:51:14,155 | INFO     | cpuconsumptiontime: 72000 s
[2025-06-05 09:28:14] 2025-06-05 05:51:14,155 | INFO     | nevents: 400
[2025-06-05 09:28:14] 2025-06-05 05:51:14,156 | INFO     | neventsw: 0
[2025-06-05 09:28:14] 2025-06-05 05:51:14,156 | INFO     | pid: 20543
[2025-06-05 09:28:14] 2025-06-05 05:51:14,156 | INFO     | pgrp: 20543
[2025-06-05 09:28:14] 2025-06-05 05:51:14,156 | INFO     | corecount: 8
[2025-06-05 09:28:14] 2025-06-05 05:51:14,156 | INFO     | event service: False
[2025-06-05 09:28:14] 2025-06-05 05:51:14,156 | INFO     | sizes: {0: 2397222, 1: 2397421, 12: 2397421, 22: 2397449, 33: 2397477, 44: 2397533, 55: 2397689, 65: 2397717, 76: 2397745, 87: 2397801, 92: 2398035, 97: 2398343, 1
[2025-06-05 09:28:14] 2025-06-05 05:51:14,156 | INFO     | --------------------------------------------------
[2025-06-05 09:28:14] 2025-06-05 05:51:14,156 | INFO     | 
[2025-06-05 09:28:14] 2025-06-05 05:51:14,157 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2025-06-05 09:28:14] 2025-06-05 05:51:14,773 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 09:28:14] 2025-06-05 05:51:14,774 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 09:28:14] 2025-06-05 05:51:14,774 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 09:28:14] 2025-06-05 05:51:14,774 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 09:28:14] 2025-06-05 05:51:14,774 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 09:28:14] 2025-06-05 05:51:14,774 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 09:28:14] 2025-06-05 05:51:14,774 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 09:28:14] 2025-06-05 05:51:14,774 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 09:28:14] 2025-06-05 05:51:14,774 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 09:28:14] 2025-06-05 05:51:14,774 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 09:28:14] 2025-06-05 05:51:14,774 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 09:28:14] 2025-06-05 05:51:14,775 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 09:28:14] 2025-06-05 05:51:14,775 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 09:28:14] 2025-06-05 05:51:14,775 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 09:28:14] 2025-06-05 05:51:14,775 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 09:28:14] 2025-06-05 05:51:14,775 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 09:28:14] 2025-06-05 05:51:14,775 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 09:28:14] 2025-06-05 05:51:14,775 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 09:28:14] 2025-06-05 05:51:14,775 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 09:28:14] 2025-06-05 05:51:14,775 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 09:28:14] 2025-06-05 05:51:14,775 | INFO     | job 6667885959 has completed (purged errors)
[2025-06-05 09:28:14] 2025-06-05 05:51:14,776 | INFO     | overall cleanup function is called
[2025-06-05 09:28:14] 2025-06-05 05:51:15,784 | INFO     | --- collectZombieJob: --- 10, [20543]
[2025-06-05 09:28:14] 2025-06-05 05:51:15,785 | INFO     | zombie collector waiting for pid 20543
[2025-06-05 09:28:14] 2025-06-05 05:51:15,785 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 09:28:14] 2025-06-05 05:51:15,785 | INFO     | collected zombie processes
[2025-06-05 09:28:14] 2025-06-05 05:51:15,785 | INFO     | will attempt to kill all subprocesses of pid=20543
[2025-06-05 09:28:14] 2025-06-05 05:51:15,910 | INFO     | process IDs to be killed: [20543] (in reverse order)
[2025-06-05 09:28:14] 2025-06-05 05:51:16,569 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 09:28:14] 2025-06-05 05:51:16,570 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 09:28:14] 2025-06-05 05:51:16,581 | INFO     | did not find any defunct processes belonging to 20543
[2025-06-05 09:28:14] 2025-06-05 05:51:16,585 | INFO     | did not find any defunct processes belonging to 20543
[2025-06-05 09:28:14] 2025-06-05 05:51:16,586 | INFO     | ready for new job
[2025-06-05 09:28:14] 2025-06-05 05:51:16,586 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 09:28:14] 2025-06-05 05:51:16,588 | INFO     | **************************************
[2025-06-05 09:28:14] 2025-06-05 05:51:16,589 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 09:28:14] 2025-06-05 05:51:16,589 | INFO     | **************************************
[2025-06-05 09:28:14] 2025-06-05 05:51:16,589 | INFO     | 
[2025-06-05 09:28:14] 2025-06-05 05:51:16,590 | INFO     | pilot is running in a VM
[2025-06-05 09:28:14] 2025-06-05 05:51:16,590 | INFO     | architecture information:
[2025-06-05 09:28:14] 2025-06-05 05:51:16,601 | INFO     | executing command: cat /etc/os-release
[2025-06-05 09:28:14] 2025-06-05 05:51:16,817 | INFO     | cat /etc/os-release:
[2025-06-05 09:28:14] NAME="CentOS Linux"
[2025-06-05 09:28:14] VERSION="7 (Core)"
[2025-06-05 09:28:14] ID="centos"
[2025-06-05 09:28:14] ID_LIKE="rhel fedora"
[2025-06-05 09:28:14] VERSION_ID="7"
[2025-06-05 09:28:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 09:28:14] ANSI_COLOR="0;31"
[2025-06-05 09:28:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 09:28:14] HOME_URL="https://www.centos.org/"
[2025-06-05 09:28:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 09:28:14] 
[2025-06-05 09:28:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 09:28:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 09:28:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 09:28:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 09:28:14] 
[2025-06-05 09:28:14] 2025-06-05 05:51:16,818 | INFO     | **************************************
[2025-06-05 09:28:14] 2025-06-05 05:51:17,321 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2025-06-05 09:28:14] 2025-06-05 05:51:17,584 | INFO     | sufficient remaining disk space (496946380800 B)
[2025-06-05 09:28:14] 2025-06-05 05:51:17,585 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 09:28:14] 2025-06-05 05:51:17,585 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 09:28:14] 2025-06-05 05:51:17,585 | INFO     | update_server=False
[2025-06-05 09:28:14] 2025-06-05 05:51:17,585 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 09:28:14] 2025-06-05 05:51:17,586 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 09:28:14] 2025-06-05 05:51:17,586 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 09:28:14] 2025-06-05 05:51:17,586 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 09:28:14] 2025-06-05 05:51:17,586 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 09:28:14] 2025-06-05 05:51:17,593 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 09:28:14] 2025-06-05 05:51:17,593 | INFO     | aborting loop
[2025-06-05 09:28:14] 2025-06-05 05:51:17,672 | INFO     | all payload control threads have been joined
[2025-06-05 09:28:14] 2025-06-05 05:51:17,719 | INFO     | all data control threads have been joined
[2025-06-05 09:28:14] 2025-06-05 05:51:17,822 | INFO     | all job control threads have been joined
[2025-06-05 09:28:14] 2025-06-05 05:51:18,591 | INFO     | [job] retrieve thread has finished
[2025-06-05 09:28:14] 2025-06-05 05:51:18,599 | INFO     | [job] job monitor thread has finished
[2025-06-05 09:28:14] 2025-06-05 05:51:18,679 | INFO     | [payload] control thread has finished
[2025-06-05 09:28:14] 2025-06-05 05:51:18,725 | INFO     | [data] control thread has finished
[2025-06-05 09:28:14] 2025-06-05 05:51:18,765 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 09:28:14] 2025-06-05 05:51:18,792 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 09:28:14] 2025-06-05 05:51:18,828 | INFO     | [job] control thread has finished
[2025-06-05 09:28:14] 2025-06-05 05:51:19,069 | INFO     | [payload] validate_post thread has finished
[2025-06-05 09:28:14] 2025-06-05 05:51:19,137 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 09:28:14] 2025-06-05 05:51:19,211 | INFO     | [data] copytool_in thread has finished
[2025-06-05 09:28:14] 2025-06-05 05:51:19,520 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 09:28:14] 2025-06-05 05:51:19,644 | INFO     | [payload] failed_post thread has finished
[2025-06-05 09:28:14] 2025-06-05 05:51:19,757 | INFO     | [job] validate thread has finished
[2025-06-05 09:28:14] 2025-06-05 05:51:19,798 | INFO     | [job] queue monitor thread has finished
[2025-06-05 09:28:14] 2025-06-05 05:51:19,983 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 09:28:14] 2025-06-05 05:51:20,083 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 09:28:14] 2025-06-05 05:51:20,772 | INFO     | [data] copytool_out thread has finished
[2025-06-05 09:28:14] 2025-06-05 05:51:23,146 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 09:28:14] 2025-06-05 05:51:27,027 [wrapper] supervise_pilot (15 min periods counter: 23)
[2025-06-05 09:28:14] 2025-06-05 05:51:28,311 | INFO     | job.realtimelogging is not enabled
[2025-06-05 09:28:14] 2025-06-05 05:51:29,317 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 09:28:14] 2025-06-05 05:51:30,475 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139686539495232)>', '<ExcThread(monitor, started 139685892454144)>']
[2025-06-05 09:28:14] 2025-06-05 05:51:30,663 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 09:28:14] 2025-06-05 05:51:30,663 | INFO     | [monitor] control thread has ended
[2025-06-05 09:28:14] 2025-06-05 05:51:35,501 | INFO     | all workflow threads have been joined
[2025-06-05 09:28:14] 2025-06-05 05:51:35,501 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 09:28:14] 2025-06-05 05:51:35,501 | INFO     | traces error code: 0
[2025-06-05 09:28:14] 2025-06-05 05:51:35,502 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 09:28:14] 2025-06-05 05:51:35,904 [wrapper] ==== pilot stdout END ====
[2025-06-05 09:28:14] 2025-06-05 05:51:36,013 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 09:28:14] 2025-06-05 05:51:36,090 [wrapper] pilotpid: 13915
[2025-06-05 09:28:14] 2025-06-05 05:51:36,176 [wrapper] Pilot exit status: 0
[2025-06-05 09:28:14] 2025-06-05 05:51:36,652 [wrapper] pandaids: 6667885959
[2025-06-05 09:28:14] 2025-06-05 05:51:37,291 [wrapper] cleanup supervisor_pilot 13777 13916
[2025-06-05 09:28:14] 2025-06-05 05:51:37,401 [wrapper] Test setup, not cleaning
[2025-06-05 09:28:14] 2025-06-05 05:51:37,480 [wrapper] apfmon messages muted
[2025-06-05 09:28:14] 2025-06-05 05:51:37,561 [wrapper] ==== wrapper stdout END ====
[2025-06-05 09:28:14] 2025-06-05 05:51:37,630 [wrapper] ==== wrapper stderr END ====
[2025-06-05 09:28:14]  *** Error codes and diagnostics ***
[2025-06-05 09:28:14]     "exeErrorCode": 0,
[2025-06-05 09:28:14]     "exeErrorDiag": "",
[2025-06-05 09:28:14]     "pilotErrorCode": 0,
[2025-06-05 09:28:14]     "pilotErrorDiag": "",
[2025-06-05 09:28:14]  *** Listing of results directory ***
[2025-06-05 09:28:14] total 415004
[2025-06-05 09:28:14] -rw-r--r--. 1 boinc boinc    495897 May 28 04:39 pilot3.tar.gz
[2025-06-05 09:28:14] -rw-r--r--. 1 boinc boinc      5111 May 28 04:50 queuedata.json
[2025-06-05 09:28:14] -rwx------. 1 boinc boinc     37140 May 28 04:57 runpilot2-wrapper.sh
[2025-06-05 09:28:14] -rw-r--r--. 1 boinc boinc       100 Jun  5 01:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 09:28:14] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 01:48 run_atlas
[2025-06-05 09:28:14] -rw-r--r--. 1 boinc boinc       105 Jun  5 01:48 job.xml
[2025-06-05 09:28:14] -rw-r--r--. 2 boinc boinc 221616446 Jun  5 01:48 EVNT.44871834._003040.pool.root.1
[2025-06-05 09:28:14] -rw-r--r--. 2 boinc boinc     15093 Jun  5 01:48 start_atlas.sh
[2025-06-05 09:28:14] drwxrwx--x. 2 boinc boinc        68 Jun  5 01:48 shared
[2025-06-05 09:28:14] -rw-r--r--. 2 boinc boinc    508879 Jun  5 01:48 input.tar.gz
[2025-06-05 09:28:14] -rw-r--r--. 1 boinc boinc      6392 Jun  5 01:48 init_data.xml
[2025-06-05 09:28:14] -rw-r--r--. 1 boinc boinc         0 Jun  5 01:48 boinc_lockfile
[2025-06-05 09:28:14] -rw-r--r--. 1 boinc boinc      2559 Jun  5 02:18 pandaJob.out
[2025-06-05 09:28:14] -rw-------. 1 boinc boinc    987117 Jun  5 02:21 agis_schedconf.cvmfs.json
[2025-06-05 09:28:14] drwx------. 4 boinc boinc      4096 Jun  5 02:21 pilot3
[2025-06-05 09:28:14] -rw-------. 1 boinc boinc 195325775 Jun  5 07:48 HITS.44871837._077693.pool.root.1
[2025-06-05 09:28:14] -rw-r--r--. 1 boinc boinc       531 Jun  5 07:48 boinc_task_state.xml
[2025-06-05 09:28:14] -rw-------. 1 boinc boinc      1016 Jun  5 07:49 memory_monitor_summary.json
[2025-06-05 09:28:14] -rw-------. 1 boinc boinc   1598969 Jun  5 07:49 agis_ddmendpoints.agis.ALL.json
[2025-06-05 09:28:14] -rw-------. 1 boinc boinc    430400 Jun  5 07:49 log.44871837._077693.job.log.tgz.1
[2025-06-05 09:28:14] -rw-------. 1 boinc boinc        95 Jun  5 07:51 pilot_heartbeat.json
[2025-06-05 09:28:14] -rw-------. 1 boinc boinc      7687 Jun  5 07:51 heartbeat.json
[2025-06-05 09:28:14] -rw-------. 1 boinc boinc      4612 Jun  5 07:51 pilotlog.txt
[2025-06-05 09:28:14] -rw-------. 1 boinc boinc   1673487 Jun  5 07:51 log.44871837._077693.job.log.1
[2025-06-05 09:28:14] -rw-------. 1 boinc boinc       357 Jun  5 07:51 output.list
[2025-06-05 09:28:14] -rw-r--r--. 1 boinc boinc       620 Jun  5 07:51 runtime_log
[2025-06-05 09:28:14] -rw-------. 1 boinc boinc   2119680 Jun  5 07:51 result.tar.gz
[2025-06-05 09:28:14] -rw-r--r--. 1 boinc boinc      8673 Jun  5 07:51 runtime_log.err
[2025-06-05 09:28:14] -rw-------. 1 boinc boinc       657 Jun  5 07:51 O4cMDmh9Le7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmJ6aKDmzNDt0n.diag
[2025-06-05 09:28:14] -rw-r--r--. 1 boinc boinc      8192 Jun  5 09:28 boinc_mmap_file
[2025-06-05 09:28:14] -rw-r--r--. 1 boinc boinc        28 Jun  5 09:28 wrapper_checkpoint.txt
[2025-06-05 09:28:14] -rw-r--r--. 1 boinc boinc     20502 Jun  5 09:28 stderr.txt
[2025-06-05 09:28:14] HITS file was successfully produced:
[2025-06-05 09:28:14] -rw-------. 1 boinc boinc 195325775 Jun  5 07:48 shared/HITS.pool.root.1
[2025-06-05 09:28:14]  *** Contents of shared directory: ***
[2025-06-05 09:28:14] total 409760
[2025-06-05 09:28:14] -rw-r--r--. 2 boinc boinc 221616446 Jun  5 01:48 ATLAS.root_0
[2025-06-05 09:28:14] -rw-r--r--. 2 boinc boinc     15093 Jun  5 01:48 start_atlas.sh
[2025-06-05 09:28:14] -rw-r--r--. 2 boinc boinc    508879 Jun  5 01:48 input.tar.gz
[2025-06-05 09:28:14] -rw-------. 1 boinc boinc 195325775 Jun  5 07:48 HITS.pool.root.1
[2025-06-05 09:28:14] -rw-------. 1 boinc boinc   2119680 Jun  5 07:51 result.tar.gz
09:28:16 (23508): run_atlas exited; CPU time 72276.381607
09:28:16 (23508): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN