Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:57:16 (1371): wrapper (7.7.26015): starting
23:57:16 (1371): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 23:57:16] Arguments: --nthreads 8
[2025-06-04 23:57:16] Threads: 8
[2025-06-04 23:57:16] Checking for CVMFS
[2025-06-04 23:57:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 23:57:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 23:57:17] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 23:57:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 23:57:18] 2.11.2.0 17186 33943 103384 146795 3 60 19167256 25165825 3137 130560 0 18191735 99.858 19228532 2072 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 23:57:18] CVMFS is ok
[2025-06-04 23:57:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 23:57:18] Checking for apptainer binary...
[2025-06-04 23:57:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 23:57:18] Running /usr/bin/apptainer --version
[2025-06-04 23:57:18] apptainer version 1.3.2-1.el7
[2025-06-04 23:57:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 23:57:37] cg-vwn311.simple-grid.lan
[2025-06-04 23:57:37] apptainer works
[2025-06-04 23:57:37] Set ATHENA_PROC_NUMBER=8
[2025-06-04 23:57:37] Set ATHENA_CORE_NUMBER=8
[2025-06-04 23:57:37] Starting ATLAS job with PandaID=6679484921
[2025-06-04 23:57:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 04:03:29]  *** The last 200 lines of the pilot log: ***
[2025-06-05 04:03:29] 2025-06-05 02:03:15,301 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 04:03:29] 2025-06-05 02:03:15,301 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 04:03:29] 2025-06-05 02:03:15,302 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 04:03:29] 2025-06-05 02:03:15,302 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 04:03:29] 2025-06-05 02:03:15,307 | INFO     | fitting pss+swap vs Time
[2025-06-05 04:03:29] 2025-06-05 02:03:15,308 | INFO     | sum of square deviations: 3723716330.0
[2025-06-05 04:03:29] 2025-06-05 02:03:15,310 | INFO     | sum of deviations: 93956350257.0
[2025-06-05 04:03:29] 2025-06-05 02:03:15,310 | INFO     | mean x: 1749081929.0
[2025-06-05 04:03:29] 2025-06-05 02:03:15,310 | INFO     | mean y: 2415123.9475982534
[2025-06-05 04:03:29] 2025-06-05 02:03:15,310 | INFO     | -- intersect: -44130203954.829865
[2025-06-05 04:03:29] 2025-06-05 02:03:15,310 | INFO     | intersect: -44130203954.829865
[2025-06-05 04:03:29] 2025-06-05 02:03:15,311 | INFO     | chi2: 7.442761938759492
[2025-06-05 04:03:29] 2025-06-05 02:03:15,311 | INFO     | sum of square deviations: 3485088600.0
[2025-06-05 04:03:29] 2025-06-05 02:03:15,313 | INFO     | sum of deviations: 106878212728.00002
[2025-06-05 04:03:29] 2025-06-05 02:03:15,314 | INFO     | mean x: 1749081776.5
[2025-06-05 04:03:29] 2025-06-05 02:03:15,314 | INFO     | mean y: 2423212.151785714
[2025-06-05 04:03:29] 2025-06-05 02:03:15,314 | INFO     | -- intersect: -53637169820.70114
[2025-06-05 04:03:29] 2025-06-05 02:03:15,314 | INFO     | intersect: -53637169820.70114
[2025-06-05 04:03:29] 2025-06-05 02:03:15,314 | INFO     | chi2: 6.737284732586548
[2025-06-05 04:03:29] 2025-06-05 02:03:15,315 | INFO     | current chi2=6.737284732586548 (change=9.478701750475828 %)
[2025-06-05 04:03:29] 2025-06-05 02:03:15,315 | INFO     | right removable region: 223
[2025-06-05 04:03:29] 2025-06-05 02:03:15,315 | INFO     | sum of square deviations: 3485088600.0
[2025-06-05 04:03:29] 2025-06-05 02:03:15,317 | INFO     | sum of deviations: 14455101496.999992
[2025-06-05 04:03:29] 2025-06-05 02:03:15,317 | INFO     | mean x: 1749082081.5
[2025-06-05 04:03:29] 2025-06-05 02:03:15,317 | INFO     | mean y: 2465898.0178571427
[2025-06-05 04:03:29] 2025-06-05 02:03:15,318 | INFO     | -- intersect: -7252201605.891946
[2025-06-05 04:03:29] 2025-06-05 02:03:15,318 | INFO     | intersect: -7252201605.891946
[2025-06-05 04:03:29] 2025-06-05 02:03:15,318 | INFO     | chi2: 2.4577333569906457
[2025-06-05 04:03:29] 2025-06-05 02:03:15,318 | INFO     | current chi2=2.4577333569906457 (change=66.97820812739465 %)
[2025-06-05 04:03:29] 2025-06-05 02:03:15,319 | INFO     | sum of square deviations: 3256879670.0
[2025-06-05 04:03:29] 2025-06-05 02:03:15,321 | INFO     | sum of deviations: -28583053406.0
[2025-06-05 04:03:29] 2025-06-05 02:03:15,321 | INFO     | mean x: 1749082234.0
[2025-06-05 04:03:29] 2025-06-05 02:03:15,321 | INFO     | mean y: 2494521.397260274
[2025-06-05 04:03:29] 2025-06-05 02:03:15,321 | INFO     | -- intersect: 15352804011.310896
[2025-06-05 04:03:29] 2025-06-05 02:03:15,321 | INFO     | intersect: 15352804011.310896
[2025-06-05 04:03:29] 2025-06-05 02:03:15,322 | INFO     | chi2: 0.8796727049120975
[2025-06-05 04:03:29] 2025-06-05 02:03:15,322 | INFO     | current chi2=0.8796727049120975 (change=64.20796819109758 %)
[2025-06-05 04:03:29] 2025-06-05 02:03:15,322 | INFO     | sum of square deviations: 3038856977.5
[2025-06-05 04:03:29] 2025-06-05 02:03:15,324 | INFO     | sum of deviations: -34798025199.49999
[2025-06-05 04:03:29] 2025-06-05 02:03:15,324 | INFO     | mean x: 1749082386.5
[2025-06-05 04:03:29] 2025-06-05 02:03:15,324 | INFO     | mean y: 2498821.574766355
[2025-06-05 04:03:29] 2025-06-05 02:03:15,324 | INFO     | -- intersect: 20031283793.05459
[2025-06-05 04:03:29] 2025-06-05 02:03:15,325 | INFO     | intersect: 20031283793.05459
[2025-06-05 04:03:29] 2025-06-05 02:03:15,325 | INFO     | chi2: 0.8161231394409755
[2025-06-05 04:03:29] 2025-06-05 02:03:15,325 | INFO     | current chi2=0.8161231394409755 (change=7.224228410892013 %)
[2025-06-05 04:03:29] 2025-06-05 02:03:15,325 | INFO     | left removable region: 30
[2025-06-05 04:03:29] 2025-06-05 02:03:15,326 | INFO     | sum of square deviations: 2229146912.0
[2025-06-05 04:03:29] 2025-06-05 02:03:15,327 | INFO     | sum of deviations: -15296438873.000002
[2025-06-05 04:03:29] 2025-06-05 02:03:15,327 | INFO     | mean x: 1749082661.0
[2025-06-05 04:03:29] 2025-06-05 02:03:15,328 | INFO     | mean y: 2505811.994818653
[2025-06-05 04:03:29] 2025-06-05 02:03:15,328 | INFO     | -- intersect: 12004736738.895111
[2025-06-05 04:03:29] 2025-06-05 02:03:15,328 | INFO     | intersect: 12004736738.895111
[2025-06-05 04:03:29] 2025-06-05 02:03:15,328 | INFO     | chi2: 0.0268665603428499
[2025-06-05 04:03:29] 2025-06-05 02:03:15,328 | INFO     | -- intersect: 12004736738.895111
[2025-06-05 04:03:29] 2025-06-05 02:03:15,329 | INFO     | current memory leak: -6.86 B/s (using 193 data points, chi2=0.03)
[2025-06-05 04:03:29] 2025-06-05 02:03:15,329 | INFO     | ..............................
[2025-06-05 04:03:29] 2025-06-05 02:03:15,330 | INFO     | . Timing measurements:
[2025-06-05 04:03:29] 2025-06-05 02:03:15,330 | INFO     | . get job = 0 s
[2025-06-05 04:03:29] 2025-06-05 02:03:15,330 | INFO     | . initial setup = 9 s
[2025-06-05 04:03:29] 2025-06-05 02:03:15,330 | INFO     | . payload setup = 183 s
[2025-06-05 04:03:29] 2025-06-05 02:03:15,330 | INFO     | . stage-in = 0 s
[2025-06-05 04:03:29] 2025-06-05 02:03:15,330 | INFO     | . payload execution = 14078 s
[2025-06-05 04:03:29] 2025-06-05 02:03:15,330 | INFO     | . stage-out = 3 s
[2025-06-05 04:03:29] 2025-06-05 02:03:15,330 | INFO     | . log creation = 1 s
[2025-06-05 04:03:29] 2025-06-05 02:03:15,330 | INFO     | ..............................
[2025-06-05 04:03:29] 2025-06-05 02:03:15,467 | INFO     | 
[2025-06-05 04:03:29] 2025-06-05 02:03:15,469 | INFO     | job summary report
[2025-06-05 04:03:29] 2025-06-05 02:03:15,469 | INFO     | --------------------------------------------------
[2025-06-05 04:03:29] 2025-06-05 02:03:15,469 | INFO     | PanDA job id: 6679484921
[2025-06-05 04:03:29] 2025-06-05 02:03:15,469 | INFO     | task id: 45006595
[2025-06-05 04:03:29] 2025-06-05 02:03:15,470 | INFO     | errors: (none)
[2025-06-05 04:03:29] 2025-06-05 02:03:15,470 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 04:03:29] 2025-06-05 02:03:15,470 | INFO     | pilot state: finished 
[2025-06-05 04:03:29] 2025-06-05 02:03:15,470 | INFO     | transexitcode: 0
[2025-06-05 04:03:29] 2025-06-05 02:03:15,470 | INFO     | exeerrorcode: 0
[2025-06-05 04:03:29] 2025-06-05 02:03:15,470 | INFO     | exeerrordiag: 
[2025-06-05 04:03:29] 2025-06-05 02:03:15,470 | INFO     | exitcode: 0
[2025-06-05 04:03:29] 2025-06-05 02:03:15,470 | INFO     | exitmsg: OK
[2025-06-05 04:03:29] 2025-06-05 02:03:15,470 | INFO     | cpuconsumptiontime: 51628 s
[2025-06-05 04:03:29] 2025-06-05 02:03:15,470 | INFO     | nevents: 400
[2025-06-05 04:03:29] 2025-06-05 02:03:15,470 | INFO     | neventsw: 0
[2025-06-05 04:03:29] 2025-06-05 02:03:15,471 | INFO     | pid: 21263
[2025-06-05 04:03:29] 2025-06-05 02:03:15,471 | INFO     | pgrp: 21263
[2025-06-05 04:03:29] 2025-06-05 02:03:15,471 | INFO     | corecount: 8
[2025-06-05 04:03:29] 2025-06-05 02:03:15,471 | INFO     | event service: False
[2025-06-05 04:03:29] 2025-06-05 02:03:15,471 | INFO     | sizes: {0: 2397065, 1: 2397320, 2: 2397320, 12: 2397348, 23: 2397376, 34: 2397404, 45: 2397560, 55: 2397588, 66: 2397616, 77: 2397644, 88: 2397700, 96: 2398214, 98
[2025-06-05 04:03:29] 2025-06-05 02:03:15,471 | INFO     | --------------------------------------------------
[2025-06-05 04:03:29] 2025-06-05 02:03:15,471 | INFO     | 
[2025-06-05 04:03:29] 2025-06-05 02:03:15,471 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-06-05 04:03:29] 2025-06-05 02:03:15,599 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 04:03:29] 2025-06-05 02:03:15,600 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 04:03:29] 2025-06-05 02:03:15,600 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 04:03:29] 2025-06-05 02:03:15,600 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 04:03:29] 2025-06-05 02:03:15,600 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 04:03:29] 2025-06-05 02:03:15,600 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 04:03:29] 2025-06-05 02:03:15,600 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 04:03:29] 2025-06-05 02:03:15,601 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 04:03:29] 2025-06-05 02:03:15,601 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 04:03:29] 2025-06-05 02:03:15,601 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 04:03:29] 2025-06-05 02:03:15,601 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 04:03:29] 2025-06-05 02:03:15,601 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 04:03:29] 2025-06-05 02:03:15,601 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 04:03:29] 2025-06-05 02:03:15,601 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 04:03:29] 2025-06-05 02:03:15,601 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 04:03:29] 2025-06-05 02:03:15,601 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 04:03:29] 2025-06-05 02:03:15,601 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 04:03:29] 2025-06-05 02:03:15,602 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 04:03:29] 2025-06-05 02:03:15,602 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 04:03:29] 2025-06-05 02:03:15,602 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 04:03:29] 2025-06-05 02:03:15,602 | INFO     | job 6679484921 has completed (purged errors)
[2025-06-05 04:03:29] 2025-06-05 02:03:15,602 | INFO     | overall cleanup function is called
[2025-06-05 04:03:29] 2025-06-05 02:03:16,612 | INFO     | --- collectZombieJob: --- 10, [21263]
[2025-06-05 04:03:29] 2025-06-05 02:03:16,612 | INFO     | zombie collector waiting for pid 21263
[2025-06-05 04:03:29] 2025-06-05 02:03:16,613 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 04:03:29] 2025-06-05 02:03:16,613 | INFO     | collected zombie processes
[2025-06-05 04:03:29] 2025-06-05 02:03:16,613 | INFO     | will attempt to kill all subprocesses of pid=21263
[2025-06-05 04:03:29] 2025-06-05 02:03:16,718 | INFO     | process IDs to be killed: [21263] (in reverse order)
[2025-06-05 04:03:29] 2025-06-05 02:03:16,829 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 04:03:29] 2025-06-05 02:03:16,829 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 04:03:29] 2025-06-05 02:03:16,833 | INFO     | did not find any defunct processes belonging to 21263
[2025-06-05 04:03:29] 2025-06-05 02:03:16,837 | INFO     | did not find any defunct processes belonging to 21263
[2025-06-05 04:03:29] 2025-06-05 02:03:16,838 | INFO     | ready for new job
[2025-06-05 04:03:29] 2025-06-05 02:03:16,838 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 04:03:29] 2025-06-05 02:03:16,840 | INFO     | **************************************
[2025-06-05 04:03:29] 2025-06-05 02:03:16,841 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 04:03:29] 2025-06-05 02:03:16,841 | INFO     | **************************************
[2025-06-05 04:03:29] 2025-06-05 02:03:16,841 | INFO     | 
[2025-06-05 04:03:29] 2025-06-05 02:03:16,841 | INFO     | pilot is running in a VM
[2025-06-05 04:03:29] 2025-06-05 02:03:16,842 | INFO     | architecture information:
[2025-06-05 04:03:29] 2025-06-05 02:03:16,842 | INFO     | executing command: cat /etc/os-release
[2025-06-05 04:03:29] 2025-06-05 02:03:16,888 | INFO     | cat /etc/os-release:
[2025-06-05 04:03:29] NAME="CentOS Linux"
[2025-06-05 04:03:29] VERSION="7 (Core)"
[2025-06-05 04:03:29] ID="centos"
[2025-06-05 04:03:29] ID_LIKE="rhel fedora"
[2025-06-05 04:03:29] VERSION_ID="7"
[2025-06-05 04:03:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 04:03:29] ANSI_COLOR="0;31"
[2025-06-05 04:03:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 04:03:29] HOME_URL="https://www.centos.org/"
[2025-06-05 04:03:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 04:03:29] 
[2025-06-05 04:03:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 04:03:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 04:03:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 04:03:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 04:03:29] 
[2025-06-05 04:03:29] 2025-06-05 02:03:16,889 | INFO     | **************************************
[2025-06-05 04:03:29] 2025-06-05 02:03:17,392 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-06-05 04:03:29] 2025-06-05 02:03:17,433 | INFO     | sufficient remaining disk space (497078501376 B)
[2025-06-05 04:03:29] 2025-06-05 02:03:17,433 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 04:03:29] 2025-06-05 02:03:17,433 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 04:03:29] 2025-06-05 02:03:17,434 | INFO     | update_server=False
[2025-06-05 04:03:29] 2025-06-05 02:03:17,434 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 04:03:29] 2025-06-05 02:03:17,435 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 04:03:29] 2025-06-05 02:03:17,436 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 04:03:29] 2025-06-05 02:03:17,492 | INFO     | all payload control threads have been joined
[2025-06-05 04:03:29] 2025-06-05 02:03:17,700 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 04:03:29] 2025-06-05 02:03:17,700 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 04:03:29] 2025-06-05 02:03:17,700 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 04:03:29] 2025-06-05 02:03:17,868 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 04:03:29] 2025-06-05 02:03:17,868 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 04:03:29] 2025-06-05 02:03:17,869 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 04:03:29] 2025-06-05 02:03:17,869 | INFO     | will abort loop
[2025-06-05 04:03:29] 2025-06-05 02:03:18,083 | INFO     | all data control threads have been joined
[2025-06-05 04:03:29] 2025-06-05 02:03:18,267 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 04:03:29] 2025-06-05 02:03:18,401 | INFO     | all job control threads have been joined
[2025-06-05 04:03:29] 2025-06-05 02:03:18,439 | INFO     | [job] retrieve thread has finished
[2025-06-05 04:03:29] 2025-06-05 02:03:18,441 | INFO     | [job] queue monitor thread has finished
[2025-06-05 04:03:29] 2025-06-05 02:03:18,497 | INFO     | [payload] control thread has finished
[2025-06-05 04:03:29] 2025-06-05 02:03:18,530 | INFO     | [data] copytool_in thread has finished
[2025-06-05 04:03:29] 2025-06-05 02:03:18,569 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 04:03:29] 2025-06-05 02:03:18,637 | INFO     | [payload] validate_post thread has finished
[2025-06-05 04:03:29] 2025-06-05 02:03:18,860 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 04:03:29] 2025-06-05 02:03:18,875 | INFO     | [job] job monitor thread has finished
[2025-06-05 04:03:29] 2025-06-05 02:03:19,089 | INFO     | [data] control thread has finished
[2025-06-05 04:03:29] 2025-06-05 02:03:19,409 | INFO     | [job] control thread has finished
[2025-06-05 04:03:29] 2025-06-05 02:03:19,538 | INFO     | [job] validate thread has finished
[2025-06-05 04:03:29] 2025-06-05 02:03:19,742 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 04:03:29] 2025-06-05 02:03:19,885 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 04:03:29] 2025-06-05 02:03:19,926 | INFO     | [payload] failed_post thread has finished
[2025-06-05 04:03:29] 2025-06-05 02:03:20,274 | INFO     | [data] copytool_out thread has finished
[2025-06-05 04:03:29] 2025-06-05 02:03:21,446 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 04:03:29] 2025-06-05 02:03:22,189 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139886466516800)>', '<ExcThread(monitor, started 139886162056960)>']
[2025-06-05 04:03:29] 2025-06-05 02:03:22,729 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 04:03:29] 2025-06-05 02:03:22,729 | INFO     | [monitor] control thread has ended
[2025-06-05 04:03:29] 2025-06-05 02:03:27,215 | INFO     | all workflow threads have been joined
[2025-06-05 04:03:29] 2025-06-05 02:03:27,215 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 04:03:29] 2025-06-05 02:03:27,216 | INFO     | traces error code: 0
[2025-06-05 04:03:29] 2025-06-05 02:03:27,216 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 04:03:29] 2025-06-05 02:03:27,661 [wrapper] ==== pilot stdout END ====
[2025-06-05 04:03:29] 2025-06-05 02:03:27,713 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 04:03:29] 2025-06-05 02:03:27,746 [wrapper] pilotpid: 12628
[2025-06-05 04:03:29] 2025-06-05 02:03:27,806 [wrapper] Pilot exit status: 0
[2025-06-05 04:03:29] 2025-06-05 02:03:28,059 [wrapper] pandaids: 6679484921
[2025-06-05 04:03:29] 2025-06-05 02:03:28,419 [wrapper] cleanup supervisor_pilot 18525 12629
[2025-06-05 04:03:29] 2025-06-05 02:03:28,476 [wrapper] Test setup, not cleaning
[2025-06-05 04:03:29] 2025-06-05 02:03:28,530 [wrapper] apfmon messages muted
[2025-06-05 04:03:29] 2025-06-05 02:03:28,614 [wrapper] ==== wrapper stdout END ====
[2025-06-05 04:03:29] 2025-06-05 02:03:28,715 [wrapper] ==== wrapper stderr END ====
[2025-06-05 04:03:29]  *** Error codes and diagnostics ***
[2025-06-05 04:03:29]     "exeErrorCode": 0,
[2025-06-05 04:03:29]     "exeErrorDiag": "",
[2025-06-05 04:03:29]     "pilotErrorCode": 0,
[2025-06-05 04:03:29]     "pilotErrorDiag": "",
[2025-06-05 04:03:29]  *** Listing of results directory ***
[2025-06-05 04:03:29] total 391224
[2025-06-05 04:03:29] -rw-r--r--. 1 boinc boinc    495897 Jun  4 11:04 pilot3.tar.gz
[2025-06-05 04:03:29] -rwx------. 1 boinc boinc     37140 Jun  4 11:08 runpilot2-wrapper.sh
[2025-06-05 04:03:29] -rw-r--r--. 1 boinc boinc      5111 Jun  4 11:08 queuedata.json
[2025-06-05 04:03:29] -rw-r--r--. 1 boinc boinc       100 Jun  4 23:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 04:03:29] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 23:57 run_atlas
[2025-06-05 04:03:29] -rw-r--r--. 1 boinc boinc       105 Jun  4 23:57 job.xml
[2025-06-05 04:03:29] -rw-r--r--. 1 boinc boinc      6390 Jun  4 23:57 init_data.xml
[2025-06-05 04:03:29] -rw-r--r--. 2 boinc boinc 215416434 Jun  4 23:57 EVNT.45006593._001533.pool.root.1
[2025-06-05 04:03:29] -rw-r--r--. 2 boinc boinc     15093 Jun  4 23:57 start_atlas.sh
[2025-06-05 04:03:29] drwxrwx--x. 2 boinc boinc        68 Jun  4 23:57 shared
[2025-06-05 04:03:29] -rw-r--r--. 2 boinc boinc    508879 Jun  4 23:57 input.tar.gz
[2025-06-05 04:03:29] -rw-r--r--. 1 boinc boinc         0 Jun  4 23:57 boinc_lockfile
[2025-06-05 04:03:29] -rw-r--r--. 1 boinc boinc      2525 Jun  4 23:57 pandaJob.out
[2025-06-05 04:03:29] -rw-------. 1 boinc boinc    987032 Jun  5 00:00 agis_schedconf.cvmfs.json
[2025-06-05 04:03:29] drwx------. 4 boinc boinc      4096 Jun  5 00:00 pilot3
[2025-06-05 04:03:29] -rw-------. 1 boinc boinc 178105836 Jun  5 04:00 HITS.45006595._056375.pool.root.1
[2025-06-05 04:03:29] -rw-r--r--. 1 boinc boinc       530 Jun  5 04:00 boinc_task_state.xml
[2025-06-05 04:03:29] -rw-------. 1 boinc boinc      1017 Jun  5 04:01 memory_monitor_summary.json
[2025-06-05 04:03:29] -rw-------. 1 boinc boinc   1598969 Jun  5 04:01 agis_ddmendpoints.agis.ALL.json
[2025-06-05 04:03:29] -rw-------. 1 boinc boinc    399875 Jun  5 04:01 log.45006595._056375.job.log.tgz.1
[2025-06-05 04:03:29] -rw-------. 1 boinc boinc      7695 Jun  5 04:03 heartbeat.json
[2025-06-05 04:03:29] -rw-------. 1 boinc boinc        95 Jun  5 04:03 pilot_heartbeat.json
[2025-06-05 04:03:29] -rw-r--r--. 1 boinc boinc      8192 Jun  5 04:03 boinc_mmap_file
[2025-06-05 04:03:29] -rw-r--r--. 1 boinc boinc        28 Jun  5 04:03 wrapper_checkpoint.txt
[2025-06-05 04:03:29] -rw-------. 1 boinc boinc      4602 Jun  5 04:03 pilotlog.txt
[2025-06-05 04:03:29] -rw-------. 1 boinc boinc   1237487 Jun  5 04:03 log.45006595._056375.job.log.1
[2025-06-05 04:03:29] -rw-------. 1 boinc boinc       357 Jun  5 04:03 output.list
[2025-06-05 04:03:29] -rw-r--r--. 1 boinc boinc       620 Jun  5 04:03 runtime_log
[2025-06-05 04:03:29] -rw-------. 1 boinc boinc   1658880 Jun  5 04:03 result.tar.gz
[2025-06-05 04:03:29] -rw-r--r--. 1 boinc boinc      8659 Jun  5 04:03 runtime_log.err
[2025-06-05 04:03:29] -rw-------. 1 boinc boinc       657 Jun  5 04:03 MQfNDm4Hzg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmn1aKDm33o7In.diag
[2025-06-05 04:03:29] -rw-r--r--. 1 boinc boinc     20498 Jun  5 04:03 stderr.txt
[2025-06-05 04:03:29] HITS file was successfully produced:
[2025-06-05 04:03:29] -rw-------. 1 boinc boinc 178105836 Jun  5 04:00 shared/HITS.pool.root.1
[2025-06-05 04:03:29]  *** Contents of shared directory: ***
[2025-06-05 04:03:29] total 386436
[2025-06-05 04:03:29] -rw-r--r--. 2 boinc boinc 215416434 Jun  4 23:57 ATLAS.root_0
[2025-06-05 04:03:29] -rw-r--r--. 2 boinc boinc     15093 Jun  4 23:57 start_atlas.sh
[2025-06-05 04:03:29] -rw-r--r--. 2 boinc boinc    508879 Jun  4 23:57 input.tar.gz
[2025-06-05 04:03:29] -rw-------. 1 boinc boinc 178105836 Jun  5 04:00 HITS.pool.root.1
[2025-06-05 04:03:29] -rw-------. 1 boinc boinc   1658880 Jun  5 04:03 result.tar.gz
04:03:31 (1371): run_atlas exited; CPU time 51828.095731
04:03:31 (1371): called boinc_finish(0)

</stderr_txt>
]]>

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