Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:49:04 (1068): wrapper (7.7.26015): starting
02:49:04 (1068): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 02:49:04] Arguments: --nthreads 8
[2025-06-05 02:49:04] Threads: 8
[2025-06-05 02:49:04] Checking for CVMFS
[2025-06-05 02:49:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 02:49:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 02:49:05] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 02:49:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 02:49:06] 2.11.2.0 11442 33967 92364 146799 1 158 14968992 25165825 3627 130560 0 18092472 99.794 20089185 2057 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 02:49:06] CVMFS is ok
[2025-06-05 02:49:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 02:49:06] Checking for apptainer binary...
[2025-06-05 02:49:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 02:49:06] Running /usr/bin/apptainer --version
[2025-06-05 02:49:06] apptainer version 1.3.2-1.el7
[2025-06-05 02:49:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 02:49:19] cg-vwn465.simple-grid.lan
[2025-06-05 02:49:19] apptainer works
[2025-06-05 02:49:19] Set ATHENA_PROC_NUMBER=8
[2025-06-05 02:49:19] Set ATHENA_CORE_NUMBER=8
[2025-06-05 02:49:20] Starting ATLAS job with PandaID=6678365361
[2025-06-05 02:49:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 06:26:54]  *** The last 200 lines of the pilot log: ***
[2025-06-05 06:26:54] 2025-06-05 04:19:14,714 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6678365361/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 06:26:54] 2025-06-05 04:19:14,714 | INFO     | extracted standard info from prmon json
[2025-06-05 06:26:54] 2025-06-05 04:19:14,715 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 06:26:54] 2025-06-05 04:19:14,715 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 06:26:54] 2025-06-05 04:19:14,715 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 06:26:54] 2025-06-05 04:19:14,715 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 06:26:54] 2025-06-05 04:19:14,722 | INFO     | fitting pss+swap vs Time
[2025-06-05 06:26:54] 2025-06-05 04:19:14,723 | INFO     | sum of square deviations: 2632440055.0
[2025-06-05 06:26:54] 2025-06-05 04:19:14,724 | INFO     | sum of deviations: 8079740451.500008
[2025-06-05 06:26:54] 2025-06-05 04:19:14,724 | INFO     | mean x: 1749090839.5
[2025-06-05 06:26:54] 2025-06-05 04:19:14,724 | INFO     | mean y: 2479214.4264705884
[2025-06-05 06:26:54] 2025-06-05 04:19:14,725 | INFO     | -- intersect: -5366000110.454588
[2025-06-05 06:26:54] 2025-06-05 04:19:14,725 | INFO     | intersect: -5366000110.454588
[2025-06-05 06:26:54] 2025-06-05 04:19:14,725 | INFO     | chi2: 2.586541833052011
[2025-06-05 06:26:54] 2025-06-05 04:19:14,725 | INFO     | sum of square deviations: 2443580700.0
[2025-06-05 06:26:54] 2025-06-05 04:19:14,727 | INFO     | sum of deviations: 21150556900.999992
[2025-06-05 06:26:54] 2025-06-05 04:19:14,727 | INFO     | mean x: 1749090687.0
[2025-06-05 06:26:54] 2025-06-05 04:19:14,727 | INFO     | mean y: 2489552.5628140704
[2025-06-05 06:26:54] 2025-06-05 04:19:14,727 | INFO     | -- intersect: -15136868071.436535
[2025-06-05 06:26:54] 2025-06-05 04:19:14,727 | INFO     | intersect: -15136868071.436535
[2025-06-05 06:26:54] 2025-06-05 04:19:14,727 | INFO     | chi2: 1.825964837173032
[2025-06-05 06:26:54] 2025-06-05 04:19:14,727 | INFO     | current chi2=1.825964837173032 (change=29.405168946427978 %)
[2025-06-05 06:26:54] 2025-06-05 04:19:14,728 | INFO     | sum of square deviations: 2263977332.5
[2025-06-05 06:26:54] 2025-06-05 04:19:14,729 | INFO     | sum of deviations: 20569095415.500004
[2025-06-05 06:26:54] 2025-06-05 04:19:14,729 | INFO     | mean x: 1749090534.5
[2025-06-05 06:26:54] 2025-06-05 04:19:14,729 | INFO     | mean y: 2489057.355670103
[2025-06-05 06:26:54] 2025-06-05 04:19:14,729 | INFO     | -- intersect: -15888663905.183277
[2025-06-05 06:26:54] 2025-06-05 04:19:14,730 | INFO     | intersect: -15888663905.183277
[2025-06-05 06:26:54] 2025-06-05 04:19:14,730 | INFO     | chi2: 1.8274259569441547
[2025-06-05 06:26:54] 2025-06-05 04:19:14,730 | INFO     | current chi2=1.8274259569441547 (change=-0.08001905301664215 %)
[2025-06-05 06:26:54] 2025-06-05 04:19:14,730 | INFO     | right removable region: 193
[2025-06-05 06:26:54] 2025-06-05 04:19:14,730 | INFO     | sum of square deviations: 2443580700.0
[2025-06-05 06:26:54] 2025-06-05 04:19:14,734 | INFO     | sum of deviations: -28034451309.000023
[2025-06-05 06:26:54] 2025-06-05 04:19:14,734 | INFO     | mean x: 1749090992.0
[2025-06-05 06:26:54] 2025-06-05 04:19:14,734 | INFO     | mean y: 2508110.9748743717
[2025-06-05 06:26:54] 2025-06-05 04:19:14,734 | INFO     | -- intersect: 20069292175.128983
[2025-06-05 06:26:54] 2025-06-05 04:19:14,734 | INFO     | intersect: 20069292175.128983
[2025-06-05 06:26:54] 2025-06-05 04:19:14,735 | INFO     | chi2: 0.9205155338675024
[2025-06-05 06:26:54] 2025-06-05 04:19:14,735 | INFO     | current chi2=0.9205155338675024 (change=64.41134173417437 %)
[2025-06-05 06:26:54] 2025-06-05 04:19:14,735 | INFO     | sum of square deviations: 2263977332.5
[2025-06-05 06:26:54] 2025-06-05 04:19:14,736 | INFO     | sum of deviations: -25576854791.500008
[2025-06-05 06:26:54] 2025-06-05 04:19:14,737 | INFO     | mean x: 1749091144.5
[2025-06-05 06:26:54] 2025-06-05 04:19:14,737 | INFO     | mean y: 2505977.850515464
[2025-06-05 06:26:54] 2025-06-05 04:19:14,737 | INFO     | -- intersect: 19762531653.803284
[2025-06-05 06:26:54] 2025-06-05 04:19:14,737 | INFO     | intersect: 19762531653.803284
[2025-06-05 06:26:54] 2025-06-05 04:19:14,737 | INFO     | chi2: 0.9048284833029666
[2025-06-05 06:26:54] 2025-06-05 04:19:14,737 | INFO     | current chi2=0.9048284833029666 (change=1.704159244182158 %)
[2025-06-05 06:26:54] 2025-06-05 04:19:14,737 | INFO     | left removable region: 20
[2025-06-05 06:26:54] 2025-06-05 04:19:14,738 | INFO     | sum of square deviations: 1605470102.0
[2025-06-05 06:26:54] 2025-06-05 04:19:14,739 | INFO     | sum of deviations: 604786635.0000008
[2025-06-05 06:26:54] 2025-06-05 04:19:14,739 | INFO     | mean x: 1749091114.0
[2025-06-05 06:26:54] 2025-06-05 04:19:14,739 | INFO     | mean y: 2504714.1734104045
[2025-06-05 06:26:54] 2025-06-05 04:19:14,739 | INFO     | -- intersect: -656384497.0468324
[2025-06-05 06:26:54] 2025-06-05 04:19:14,739 | INFO     | intersect: -656384497.0468324
[2025-06-05 06:26:54] 2025-06-05 04:19:14,739 | INFO     | chi2: 0.04604737263438893
[2025-06-05 06:26:54] 2025-06-05 04:19:14,739 | INFO     | -- intersect: -656384497.0468324
[2025-06-05 06:26:54] 2025-06-05 04:19:14,740 | INFO     | current memory leak: 0.38 B/s (using 173 data points, chi2=0.05)
[2025-06-05 06:26:54] 2025-06-05 04:19:14,741 | INFO     | ..............................
[2025-06-05 06:26:54] 2025-06-05 04:19:14,741 | INFO     | . Timing measurements:
[2025-06-05 06:26:54] 2025-06-05 04:19:14,741 | INFO     | . get job = 0 s
[2025-06-05 06:26:54] 2025-06-05 04:19:14,741 | INFO     | . initial setup = 2 s
[2025-06-05 06:26:54] 2025-06-05 04:19:14,741 | INFO     | . payload setup = 16 s
[2025-06-05 06:26:54] 2025-06-05 04:19:14,741 | INFO     | . stage-in = 0 s
[2025-06-05 06:26:54] 2025-06-05 04:19:14,741 | INFO     | . payload execution = 12424 s
[2025-06-05 06:26:54] 2025-06-05 04:19:14,741 | INFO     | . stage-out = 5 s
[2025-06-05 06:26:54] 2025-06-05 04:19:14,741 | INFO     | . log creation = 1 s
[2025-06-05 06:26:54] 2025-06-05 04:19:14,741 | INFO     | ..............................
[2025-06-05 06:26:54] 2025-06-05 04:19:14,929 | INFO     | 
[2025-06-05 06:26:54] 2025-06-05 04:19:14,929 | INFO     | job summary report
[2025-06-05 06:26:54] 2025-06-05 04:19:14,929 | INFO     | --------------------------------------------------
[2025-06-05 06:26:54] 2025-06-05 04:19:14,929 | INFO     | PanDA job id: 6678365361
[2025-06-05 06:26:54] 2025-06-05 04:19:14,929 | INFO     | task id: 45006595
[2025-06-05 06:26:54] 2025-06-05 04:19:14,929 | INFO     | errors: (none)
[2025-06-05 06:26:54] 2025-06-05 04:19:14,930 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 06:26:54] 2025-06-05 04:19:14,930 | INFO     | pilot state: finished 
[2025-06-05 06:26:54] 2025-06-05 04:19:14,930 | INFO     | transexitcode: 0
[2025-06-05 06:26:54] 2025-06-05 04:19:14,930 | INFO     | exeerrorcode: 0
[2025-06-05 06:26:54] 2025-06-05 04:19:14,930 | INFO     | exeerrordiag: 
[2025-06-05 06:26:54] 2025-06-05 04:19:14,930 | INFO     | exitcode: 0
[2025-06-05 06:26:54] 2025-06-05 04:19:14,930 | INFO     | exitmsg: OK
[2025-06-05 06:26:54] 2025-06-05 04:19:14,930 | INFO     | cpuconsumptiontime: 47109 s
[2025-06-05 06:26:54] 2025-06-05 04:19:14,930 | INFO     | nevents: 400
[2025-06-05 06:26:54] 2025-06-05 04:19:14,930 | INFO     | neventsw: 0
[2025-06-05 06:26:54] 2025-06-05 04:19:14,930 | INFO     | pid: 13329
[2025-06-05 06:26:54] 2025-06-05 04:19:14,930 | INFO     | pgrp: 13329
[2025-06-05 06:26:54] 2025-06-05 04:19:14,930 | INFO     | corecount: 8
[2025-06-05 06:26:54] 2025-06-05 04:19:14,930 | INFO     | event service: False
[2025-06-05 06:26:54] 2025-06-05 04:19:14,931 | INFO     | sizes: {0: 2397171, 1: 2397370, 11: 2397576, 12: 2397604, 12444: 2426779, 12450: 2435720, 12452: 2435904, 12549: 2436074}
[2025-06-05 06:26:54] 2025-06-05 04:19:14,931 | INFO     | --------------------------------------------------
[2025-06-05 06:26:54] 2025-06-05 04:19:14,931 | INFO     | 
[2025-06-05 06:26:54] 2025-06-05 04:19:14,931 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-05 06:26:54] 2025-06-05 04:19:14,975 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 06:26:54] 2025-06-05 04:19:14,976 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 06:26:54] 2025-06-05 04:19:14,976 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 06:26:54] 2025-06-05 04:19:14,976 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 06:26:54] 2025-06-05 04:19:14,976 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 06:26:54] 2025-06-05 04:19:14,976 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 06:26:54] 2025-06-05 04:19:14,976 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 06:26:54] 2025-06-05 04:19:14,976 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 06:26:54] 2025-06-05 04:19:14,976 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 06:26:54] 2025-06-05 04:19:14,976 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 06:26:54] 2025-06-05 04:19:14,977 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 06:26:54] 2025-06-05 04:19:14,977 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 06:26:54] 2025-06-05 04:19:14,977 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 06:26:54] 2025-06-05 04:19:14,977 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 06:26:54] 2025-06-05 04:19:14,977 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 06:26:54] 2025-06-05 04:19:14,977 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 06:26:54] 2025-06-05 04:19:14,977 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 06:26:54] 2025-06-05 04:19:14,977 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 06:26:54] 2025-06-05 04:19:14,977 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 06:26:54] 2025-06-05 04:19:14,977 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 06:26:54] 2025-06-05 04:19:14,977 | INFO     | job 6678365361 has completed (purged errors)
[2025-06-05 06:26:54] 2025-06-05 04:19:14,978 | INFO     | overall cleanup function is called
[2025-06-05 06:26:54] 2025-06-05 04:19:15,987 | INFO     | --- collectZombieJob: --- 10, [13329]
[2025-06-05 06:26:54] 2025-06-05 04:19:15,987 | INFO     | zombie collector waiting for pid 13329
[2025-06-05 06:26:54] 2025-06-05 04:19:15,987 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 06:26:54] 2025-06-05 04:19:15,987 | INFO     | collected zombie processes
[2025-06-05 06:26:54] 2025-06-05 04:19:15,987 | INFO     | will attempt to kill all subprocesses of pid=13329
[2025-06-05 06:26:54] 2025-06-05 04:19:16,087 | INFO     | process IDs to be killed: [13329] (in reverse order)
[2025-06-05 06:26:54] 2025-06-05 04:19:16,702 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 06:26:54] 2025-06-05 04:19:16,703 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 06:26:54] 2025-06-05 04:19:16,706 | INFO     | did not find any defunct processes belonging to 13329
[2025-06-05 06:26:54] 2025-06-05 04:19:16,709 | INFO     | did not find any defunct processes belonging to 13329
[2025-06-05 06:26:54] 2025-06-05 04:19:16,709 | INFO     | ready for new job
[2025-06-05 06:26:54] 2025-06-05 04:19:16,710 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 06:26:54] 2025-06-05 04:19:16,712 | INFO     | **************************************
[2025-06-05 06:26:54] 2025-06-05 04:19:16,712 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 06:26:54] 2025-06-05 04:19:16,712 | INFO     | **************************************
[2025-06-05 06:26:54] 2025-06-05 04:19:16,712 | INFO     | 
[2025-06-05 06:26:54] 2025-06-05 04:19:16,713 | INFO     | pilot is running in a VM
[2025-06-05 06:26:54] 2025-06-05 04:19:16,713 | INFO     | architecture information:
[2025-06-05 06:26:54] 2025-06-05 04:19:16,720 | INFO     | executing command: cat /etc/os-release
[2025-06-05 06:26:54] 2025-06-05 04:19:16,908 | INFO     | cat /etc/os-release:
[2025-06-05 06:26:54] NAME="CentOS Linux"
[2025-06-05 06:26:54] VERSION="7 (Core)"
[2025-06-05 06:26:54] ID="centos"
[2025-06-05 06:26:54] ID_LIKE="rhel fedora"
[2025-06-05 06:26:54] VERSION_ID="7"
[2025-06-05 06:26:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 06:26:54] ANSI_COLOR="0;31"
[2025-06-05 06:26:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 06:26:54] HOME_URL="https://www.centos.org/"
[2025-06-05 06:26:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 06:26:54] 
[2025-06-05 06:26:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 06:26:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 06:26:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 06:26:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 06:26:54] 
[2025-06-05 06:26:54] 2025-06-05 04:19:16,909 | INFO     | **************************************
[2025-06-05 06:26:54] 2025-06-05 04:19:17,412 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-05 06:26:54] 2025-06-05 04:19:17,637 | INFO     | sufficient remaining disk space (497121492992 B)
[2025-06-05 06:26:54] 2025-06-05 04:19:17,637 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 06:26:54] 2025-06-05 04:19:17,637 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 06:26:54] 2025-06-05 04:19:17,637 | INFO     | update_server=False
[2025-06-05 06:26:54] 2025-06-05 04:19:17,637 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 06:26:54] 2025-06-05 04:19:17,726 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 06:26:54] 2025-06-05 04:19:17,726 | INFO     | aborting loop
[2025-06-05 06:26:54] 2025-06-05 04:19:17,847 | INFO     | all job control threads have been joined
[2025-06-05 06:26:54] 2025-06-05 04:19:18,073 | INFO     | all data control threads have been joined
[2025-06-05 06:26:54] 2025-06-05 04:19:18,542 | INFO     | all payload control threads have been joined
[2025-06-05 06:26:54] 2025-06-05 04:19:18,576 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 06:26:54] 2025-06-05 04:19:18,576 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 06:26:54] 2025-06-05 04:19:18,576 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 06:26:54] 2025-06-05 04:19:18,644 | INFO     | [job] retrieve thread has finished
[2025-06-05 06:26:54] 2025-06-05 04:19:18,732 | INFO     | [job] job monitor thread has finished
[2025-06-05 06:26:54] 2025-06-05 04:19:18,766 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 06:26:54] 2025-06-05 04:19:18,780 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 06:26:54] 2025-06-05 04:19:18,853 | INFO     | [job] control thread has finished
[2025-06-05 06:26:54] 2025-06-05 04:19:18,895 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 06:26:54] 2025-06-05 04:19:18,935 | INFO     | [job] validate thread has finished
[2025-06-05 06:26:54] 2025-06-05 04:19:18,994 | INFO     | [payload] failed_post thread has finished
[2025-06-05 06:26:54] 2025-06-05 04:19:19,016 | INFO     | [payload] validate_post thread has finished
[2025-06-05 06:26:54] 2025-06-05 04:19:19,079 | INFO     | [data] control thread has finished
[2025-06-05 06:26:54] 2025-06-05 04:19:19,548 | INFO     | [payload] control thread has finished
[2025-06-05 06:26:54] 2025-06-05 04:19:19,767 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 06:26:54] 2025-06-05 04:19:19,776 | INFO     | [data] copytool_in thread has finished
[2025-06-05 06:26:54] 2025-06-05 04:19:19,789 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 06:26:54] 2025-06-05 04:19:19,857 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 06:26:54] 2025-06-05 04:19:19,940 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 06:26:54] 2025-06-05 04:19:20,901 | INFO     | [data] copytool_out thread has finished
[2025-06-05 06:26:54] 2025-06-05 04:19:20,946 | INFO     | [job] queue monitor thread has finished
[2025-06-05 06:26:54] 2025-06-05 04:19:22,775 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 06:26:54] 2025-06-05 04:19:24,414 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139794109994816)>', '<ExcThread(monitor, started 139793883105024)>']
[2025-06-05 06:26:54] 2025-06-05 04:19:24,614 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 06:26:54] 2025-06-05 04:19:24,614 | INFO     | [monitor] control thread has ended
[2025-06-05 06:26:54] 2025-06-05 04:19:29,441 | INFO     | all workflow threads have been joined
[2025-06-05 06:26:54] 2025-06-05 04:19:29,441 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 06:26:54] 2025-06-05 04:19:29,441 | INFO     | traces error code: 0
[2025-06-05 06:26:54] 2025-06-05 04:19:29,442 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 06:26:54] 2025-06-05 04:19:29,974 [wrapper] ==== pilot stdout END ====
[2025-06-05 06:26:54] 2025-06-05 04:19:30,106 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 06:26:54] 2025-06-05 04:19:30,166 [wrapper] pilotpid: 6756
[2025-06-05 06:26:54] 2025-06-05 04:19:30,259 [wrapper] Pilot exit status: 0
[2025-06-05 06:26:54] 2025-06-05 04:19:30,830 [wrapper] pandaids: 6678365361
[2025-06-05 06:26:54] 2025-06-05 04:19:31,749 [wrapper] cleanup supervisor_pilot 26414 6757
[2025-06-05 06:26:54] 2025-06-05 04:19:31,868 [wrapper] Test setup, not cleaning
[2025-06-05 06:26:54] 2025-06-05 04:19:31,942 [wrapper] apfmon messages muted
[2025-06-05 06:26:54] 2025-06-05 04:19:31,975 [wrapper] ==== wrapper stdout END ====
[2025-06-05 06:26:54] 2025-06-05 04:19:32,031 [wrapper] ==== wrapper stderr END ====
[2025-06-05 06:26:54]  *** Error codes and diagnostics ***
[2025-06-05 06:26:54]     "exeErrorCode": 0,
[2025-06-05 06:26:54]     "exeErrorDiag": "",
[2025-06-05 06:26:54]     "pilotErrorCode": 0,
[2025-06-05 06:26:54]     "pilotErrorDiag": "",
[2025-06-05 06:26:54]  *** Listing of results directory ***
[2025-06-05 06:26:54] total 400232
[2025-06-05 06:26:54] -rw-r--r--. 1 boinc boinc    495897 Jun  4 07:59 pilot3.tar.gz
[2025-06-05 06:26:54] -rw-r--r--. 1 boinc boinc      5111 Jun  4 08:35 queuedata.json
[2025-06-05 06:26:54] -rwx------. 1 boinc boinc     37140 Jun  4 08:36 runpilot2-wrapper.sh
[2025-06-05 06:26:54] -rw-r--r--. 1 boinc boinc       100 Jun  5 02:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 06:26:54] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 02:49 run_atlas
[2025-06-05 06:26:54] -rw-r--r--. 1 boinc boinc       105 Jun  5 02:49 job.xml
[2025-06-05 06:26:54] -rw-r--r--. 2 boinc boinc 217340707 Jun  5 02:49 EVNT.45006593._002177.pool.root.1
[2025-06-05 06:26:54] -rw-r--r--. 2 boinc boinc     15093 Jun  5 02:49 start_atlas.sh
[2025-06-05 06:26:54] drwxrwx--x. 2 boinc boinc        68 Jun  5 02:49 shared
[2025-06-05 06:26:54] -rw-r--r--. 2 boinc boinc    508886 Jun  5 02:49 input.tar.gz
[2025-06-05 06:26:54] -rw-r--r--. 1 boinc boinc      6392 Jun  5 02:49 init_data.xml
[2025-06-05 06:26:54] -rw-r--r--. 1 boinc boinc         0 Jun  5 02:49 boinc_lockfile
[2025-06-05 06:26:54] -rw-r--r--. 1 boinc boinc      2525 Jun  5 02:49 pandaJob.out
[2025-06-05 06:26:54] -rw-------. 1 boinc boinc    987117 Jun  5 02:49 agis_schedconf.cvmfs.json
[2025-06-05 06:26:54] drwx------. 4 boinc boinc      4096 Jun  5 02:49 pilot3
[2025-06-05 06:26:54] -rw-------. 1 boinc boinc 185768539 Jun  5 06:16 HITS.45006595._054392.pool.root.1
[2025-06-05 06:26:54] -rw-r--r--. 1 boinc boinc       531 Jun  5 06:16 boinc_task_state.xml
[2025-06-05 06:26:54] -rw-------. 1 boinc boinc      1016 Jun  5 06:17 memory_monitor_summary.json
[2025-06-05 06:26:54] -rw-------. 1 boinc boinc   1598969 Jun  5 06:17 agis_ddmendpoints.agis.ALL.json
[2025-06-05 06:26:54] -rw-------. 1 boinc boinc    366939 Jun  5 06:17 log.45006595._054392.job.log.tgz.1
[2025-06-05 06:26:54] -rw-------. 1 boinc boinc        95 Jun  5 06:18 pilot_heartbeat.json
[2025-06-05 06:26:54] -rw-------. 1 boinc boinc      7675 Jun  5 06:19 heartbeat.json
[2025-06-05 06:26:54] -rw-------. 1 boinc boinc      4416 Jun  5 06:19 pilotlog.txt
[2025-06-05 06:26:54] -rw-------. 1 boinc boinc   1092455 Jun  5 06:19 log.45006595._054392.job.log.1
[2025-06-05 06:26:54] -rw-------. 1 boinc boinc       357 Jun  5 06:19 output.list
[2025-06-05 06:26:54] -rw-r--r--. 1 boinc boinc       620 Jun  5 06:19 runtime_log
[2025-06-05 06:26:54] -rw-------. 1 boinc boinc   1474560 Jun  5 06:19 result.tar.gz
[2025-06-05 06:26:54] -rw-r--r--. 1 boinc boinc      8659 Jun  5 06:19 runtime_log.err
[2025-06-05 06:26:54] -rw-------. 1 boinc boinc       657 Jun  5 06:19 BvgNDmyuwg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmeYnKDmtBH7in.diag
[2025-06-05 06:26:54] -rw-r--r--. 1 boinc boinc      8192 Jun  5 06:26 boinc_mmap_file
[2025-06-05 06:26:54] -rw-r--r--. 1 boinc boinc        28 Jun  5 06:26 wrapper_checkpoint.txt
[2025-06-05 06:26:54] -rw-r--r--. 1 boinc boinc     20502 Jun  5 06:26 stderr.txt
[2025-06-05 06:26:54] HITS file was successfully produced:
[2025-06-05 06:26:54] -rw-------. 1 boinc boinc 185768539 Jun  5 06:16 shared/HITS.pool.root.1
[2025-06-05 06:26:54]  *** Contents of shared directory: ***
[2025-06-05 06:26:54] total 395620
[2025-06-05 06:26:54] -rw-r--r--. 2 boinc boinc 217340707 Jun  5 02:49 ATLAS.root_0
[2025-06-05 06:26:54] -rw-r--r--. 2 boinc boinc     15093 Jun  5 02:49 start_atlas.sh
[2025-06-05 06:26:54] -rw-r--r--. 2 boinc boinc    508886 Jun  5 02:49 input.tar.gz
[2025-06-05 06:26:54] -rw-------. 1 boinc boinc 185768539 Jun  5 06:16 HITS.pool.root.1
[2025-06-05 06:26:54] -rw-------. 1 boinc boinc   1474560 Jun  5 06:19 result.tar.gz
06:26:56 (1068): run_atlas exited; CPU time 47252.731633
06:26:56 (1068): called boinc_finish(0)

</stderr_txt>
]]>

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