Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:49:17 (3971882): wrapper (7.7.26015): starting
15:49:17 (3971882): wrapper: running run_atlas (--nthreads 4)
[2025-06-06 15:49:17] Arguments: --nthreads 4
[2025-06-06 15:49:17] Threads: 4
[2025-06-06 15:49:17] Checking for CVMFS
[2025-06-06 15:49:17] No cvmfs_config command found, will try listing directly
[2025-06-06 15:49:17] CVMFS is ok
[2025-06-06 15:49:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 15:49:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 15:49:17] Further information can be found at the LHC@home message board.
[2025-06-06 15:49:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 15:49:17] Checking for apptainer binary...
[2025-06-06 15:49:17] which: no apptainer in ((null))
[2025-06-06 15:49:17] apptainer is not installed, using version from CVMFS
[2025-06-06 15:49:17] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 15:49:17] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot72/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2025-06-06 15:49:17] apptainer works
[2025-06-06 15:49:17] Set ATHENA_PROC_NUMBER=4
[2025-06-06 15:49:17] Set ATHENA_CORE_NUMBER=4
[2025-06-06 15:49:17] Starting ATLAS job with PandaID=6679572307
[2025-06-06 15:49:17] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot72/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 17:07:29]  *** The last 200 lines of the pilot log: ***
[2025-06-06 17:07:29] ]
[2025-06-06 17:07:29] 2025-06-06 15:07:02,858 | INFO     | transferring file log.45006595._056472.job.log.tgz.1 from /scratch/boinc/var/slot72/slots/0/PanDA_Pilot-6679572307/log.45006595._056472.job.log.tgz.1 to /scratch/b
[2025-06-06 17:07:29] 2025-06-06 15:07:02,859 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot72/slots/0/PanDA_Pilot-6679572307/log.45006595._056472.job.log.tgz.1 /scratch/boinc/var/slot72/slots/0/lo
[2025-06-06 17:07:29] 2025-06-06 15:07:02,874 | INFO     | adding to output.list: log.45006595._056472.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cb/13/log.45006595._056472.job.log.tg
[2025-06-06 17:07:29] 2025-06-06 15:07:02,875 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 17:07:29] 2025-06-06 15:07:02,875 | INFO     | summary of transferred files:
[2025-06-06 17:07:29] 2025-06-06 15:07:02,875 | INFO     |  -- lfn=log.45006595._056472.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 17:07:29] 2025-06-06 15:07:02,875 | INFO     | stage-out finished correctly
[2025-06-06 17:07:29] 2025-06-06 15:07:04,396 | WARNING  | process 3983252 can no longer be monitored (due to stat problems) - aborting
[2025-06-06 17:07:29] 2025-06-06 15:07:04,397 | INFO     | using path: /scratch/boinc/var/slot72/slots/0/PanDA_Pilot-6679572307/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 17:07:29] 2025-06-06 15:07:04,397 | INFO     | using path: /scratch/boinc/var/slot72/slots/0/PanDA_Pilot-6679572307/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 17:07:29] 2025-06-06 15:07:04,398 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2598411 B
[2025-06-06 17:07:29] 2025-06-06 15:07:04,398 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15793 B
[2025-06-06 17:07:29] 2025-06-06 15:07:04,398 | INFO     | executing command: df -mP /scratch/boinc/var/slot72/slots/0
[2025-06-06 17:07:29] 2025-06-06 15:07:04,411 | INFO     | sufficient remaining disk space (3381100806144 B)
[2025-06-06 17:07:29] 2025-06-06 15:07:04,412 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-06 17:07:29] 2025-06-06 15:07:04,413 | INFO     | size of work directory /scratch/boinc/var/slot72/slots/0/PanDA_Pilot-6679572307: 2896606 B (within 2537553920 B limit)
[2025-06-06 17:07:29] 2025-06-06 15:07:04,413 | INFO     | pfn file=/scratch/boinc/var/slot72/slots/0/PanDA_Pilot-6679572307/HITS.45006595._056472.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-06 17:07:29] 2025-06-06 15:07:04,413 | INFO     | total size of present files: 0 B (workdir size: 2896606 B)
[2025-06-06 17:07:29] 2025-06-06 15:07:04,413 | INFO     | output file size check: skipping output file /scratch/boinc/var/slot72/slots/0/PanDA_Pilot-6679572307/HITS.45006595._056472.pool.root.1 since it does not exist
[2025-06-06 17:07:29] 2025-06-06 15:07:04,443 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 17:07:29] 2025-06-06 15:07:05,309 | INFO     | PID=3975845 has CPU usage=11.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-06 17:07:29] 2025-06-06 15:07:05,309 | INFO     | .. there are 3 such processes running
[2025-06-06 17:07:29] 2025-06-06 15:07:05,316 | INFO     | number of running child processes to parent process 3983252: 1
[2025-06-06 17:07:29] 2025-06-06 15:07:05,316 | INFO     | maximum number of monitored processes: 6
[2025-06-06 17:07:29] 2025-06-06 15:07:06,908 | INFO     | job 6679572307 has state=finished
[2025-06-06 17:07:29] 2025-06-06 15:07:06,908 | INFO     | preparing for final server update for job 6679572307 in state='finished'
[2025-06-06 17:07:29] 2025-06-06 15:07:06,909 | INFO     | this job has now completed (state=finished)
[2025-06-06 17:07:29] 2025-06-06 15:07:06,909 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 17:07:29] 2025-06-06 15:07:06,909 | INFO     | log transfer has been attempted: DONE
[2025-06-06 17:07:29] 2025-06-06 15:07:06,909 | INFO     | job 6679572307 has finished - writing final server update
[2025-06-06 17:07:29] 2025-06-06 15:07:06,909 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2763358/.job.ad'
[2025-06-06 17:07:29] 2025-06-06 15:07:06,909 | INFO     | total number of processed events: 400 (read)
[2025-06-06 17:07:29] 2025-06-06 15:07:06,914 | INFO     | executing command: lscpu
[2025-06-06 17:07:29] 2025-06-06 15:07:06,981 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 17:07:29] 2025-06-06 15:07:07,819 | INFO     | monitor loop #345: job 0:6679572307 is in state 'finished'
[2025-06-06 17:07:29] 2025-06-06 15:07:07,819 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 17:07:29] 2025-06-06 15:07:10,312 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-06 17:07:29] 2025-06-06 15:07:10,312 | INFO     | using path: /scratch/boinc/var/slot72/slots/0/PanDA_Pilot-6679572307/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 17:07:29] 2025-06-06 15:07:10,313 | INFO     | extracted standard info from prmon json
[2025-06-06 17:07:29] 2025-06-06 15:07:10,313 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 17:07:29] 2025-06-06 15:07:10,313 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 17:07:29] 2025-06-06 15:07:10,313 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 17:07:29] 2025-06-06 15:07:10,313 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 17:07:29] 2025-06-06 15:07:10,314 | INFO     | fitting pss+swap vs Time
[2025-06-06 17:07:29] 2025-06-06 15:07:10,314 | INFO     | sum of square deviations: 101843770.0
[2025-06-06 17:07:29] 2025-06-06 15:07:10,315 | INFO     | sum of deviations: -12169073.000000022
[2025-06-06 17:07:29] 2025-06-06 15:07:10,315 | INFO     | mean x: 1749220171.0
[2025-06-06 17:07:29] 2025-06-06 15:07:10,315 | INFO     | mean y: 2346124.275362319
[2025-06-06 17:07:29] 2025-06-06 15:07:10,315 | INFO     | -- intersect: 211356336.23011932
[2025-06-06 17:07:29] 2025-06-06 15:07:10,315 | INFO     | intersect: 211356336.23011932
[2025-06-06 17:07:29] 2025-06-06 15:07:10,315 | INFO     | chi2: 0.004870329469239966
[2025-06-06 17:07:29] 2025-06-06 15:07:10,315 | INFO     | -- intersect: 211356336.23011932
[2025-06-06 17:07:29] 2025-06-06 15:07:10,315 | INFO     | current memory leak: -0.12 B/s (using 69 data points, chi2=0.00)
[2025-06-06 17:07:29] 2025-06-06 15:07:10,315 | INFO     | ..............................
[2025-06-06 17:07:29] 2025-06-06 15:07:10,315 | INFO     | . Timing measurements:
[2025-06-06 17:07:29] 2025-06-06 15:07:10,315 | INFO     | . get job = 0 s
[2025-06-06 17:07:29] 2025-06-06 15:07:10,315 | INFO     | . initial setup = 1 s
[2025-06-06 17:07:29] 2025-06-06 15:07:10,315 | INFO     | . payload setup = 6 s
[2025-06-06 17:07:29] 2025-06-06 15:07:10,316 | INFO     | . stage-in = 0 s
[2025-06-06 17:07:29] 2025-06-06 15:07:10,316 | INFO     | . payload execution = 4630 s
[2025-06-06 17:07:29] 2025-06-06 15:07:10,316 | INFO     | . stage-out = 0 s
[2025-06-06 17:07:29] 2025-06-06 15:07:10,316 | INFO     | . log creation = 0 s
[2025-06-06 17:07:29] 2025-06-06 15:07:10,316 | INFO     | ..............................
[2025-06-06 17:07:29] 2025-06-06 15:07:10,426 | INFO     | 
[2025-06-06 17:07:29] 2025-06-06 15:07:10,427 | INFO     | job summary report
[2025-06-06 17:07:29] 2025-06-06 15:07:10,427 | INFO     | --------------------------------------------------
[2025-06-06 17:07:29] 2025-06-06 15:07:10,427 | INFO     | PanDA job id: 6679572307
[2025-06-06 17:07:29] 2025-06-06 15:07:10,427 | INFO     | task id: 45006595
[2025-06-06 17:07:29] 2025-06-06 15:07:10,427 | INFO     | errors: (none)
[2025-06-06 17:07:29] 2025-06-06 15:07:10,427 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 17:07:29] 2025-06-06 15:07:10,427 | INFO     | pilot state: finished 
[2025-06-06 17:07:29] 2025-06-06 15:07:10,427 | INFO     | transexitcode: 0
[2025-06-06 17:07:29] 2025-06-06 15:07:10,427 | INFO     | exeerrorcode: 0
[2025-06-06 17:07:29] 2025-06-06 15:07:10,427 | INFO     | exeerrordiag: 
[2025-06-06 17:07:29] 2025-06-06 15:07:10,427 | INFO     | exitcode: 0
[2025-06-06 17:07:29] 2025-06-06 15:07:10,427 | INFO     | exitmsg: OK
[2025-06-06 17:07:29] 2025-06-06 15:07:10,427 | INFO     | cpuconsumptiontime: 17686 s
[2025-06-06 17:07:29] 2025-06-06 15:07:10,427 | INFO     | nevents: 400
[2025-06-06 17:07:29] 2025-06-06 15:07:10,427 | INFO     | neventsw: 0
[2025-06-06 17:07:29] 2025-06-06 15:07:10,427 | INFO     | pid: 3983252
[2025-06-06 17:07:29] 2025-06-06 15:07:10,427 | INFO     | pgrp: 3983252
[2025-06-06 17:07:29] 2025-06-06 15:07:10,428 | INFO     | corecount: 4
[2025-06-06 17:07:29] 2025-06-06 15:07:10,428 | INFO     | event service: False
[2025-06-06 17:07:29] 2025-06-06 15:07:10,428 | INFO     | sizes: {0: 2396456, 1: 2397323, 5: 2397529, 11: 2397585, 4641: 2423715, 4642: 2432678, 4644: 2432890, 4650: 2433060}
[2025-06-06 17:07:29] 2025-06-06 15:07:10,428 | INFO     | --------------------------------------------------
[2025-06-06 17:07:29] 2025-06-06 15:07:10,428 | INFO     | 
[2025-06-06 17:07:29] 2025-06-06 15:07:10,428 | INFO     | executing command: ls -lF /scratch/boinc/var/slot72/slots/0
[2025-06-06 17:07:29] 2025-06-06 15:07:10,445 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 17:07:29] 2025-06-06 15:07:10,445 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 17:07:29] 2025-06-06 15:07:10,445 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 17:07:29] 2025-06-06 15:07:10,445 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 17:07:29] 2025-06-06 15:07:10,445 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 17:07:29] 2025-06-06 15:07:10,445 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 17:07:29] 2025-06-06 15:07:10,445 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 17:07:29] 2025-06-06 15:07:10,445 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 17:07:29] 2025-06-06 15:07:10,445 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 17:07:29] 2025-06-06 15:07:10,445 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 17:07:29] 2025-06-06 15:07:10,445 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 17:07:29] 2025-06-06 15:07:10,445 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 17:07:29] 2025-06-06 15:07:10,445 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 17:07:29] 2025-06-06 15:07:10,446 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 17:07:29] 2025-06-06 15:07:10,446 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 17:07:29] 2025-06-06 15:07:10,446 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 17:07:29] 2025-06-06 15:07:10,446 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 17:07:29] 2025-06-06 15:07:10,446 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 17:07:29] 2025-06-06 15:07:10,446 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 17:07:29] 2025-06-06 15:07:10,446 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 17:07:29] 2025-06-06 15:07:10,446 | INFO     | job 6679572307 has completed (purged errors)
[2025-06-06 17:07:29] 2025-06-06 15:07:10,446 | INFO     | overall cleanup function is called
[2025-06-06 17:07:29] 2025-06-06 15:07:11,454 | INFO     | --- collectZombieJob: --- 10, [3983252]
[2025-06-06 17:07:29] 2025-06-06 15:07:11,454 | INFO     | zombie collector waiting for pid 3983252
[2025-06-06 17:07:29] 2025-06-06 15:07:11,454 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 17:07:29] 2025-06-06 15:07:11,454 | INFO     | collected zombie processes
[2025-06-06 17:07:29] 2025-06-06 15:07:11,454 | INFO     | will attempt to kill all subprocesses of pid=3983252
[2025-06-06 17:07:29] 2025-06-06 15:07:11,743 | INFO     | process IDs to be killed: [3983252] (in reverse order)
[2025-06-06 17:07:29] 2025-06-06 15:07:11,843 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 17:07:29] 2025-06-06 15:07:11,843 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 17:07:29] 2025-06-06 15:07:11,856 | INFO     | did not find any defunct processes belonging to 3983252
[2025-06-06 17:07:29] 2025-06-06 15:07:11,865 | INFO     | did not find any defunct processes belonging to 3983252
[2025-06-06 17:07:29] 2025-06-06 15:07:11,865 | INFO     | ready for new job
[2025-06-06 17:07:29] 2025-06-06 15:07:11,865 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 17:07:29] 2025-06-06 15:07:11,866 | INFO     | **************************************
[2025-06-06 17:07:29] 2025-06-06 15:07:11,867 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 17:07:29] 2025-06-06 15:07:11,867 | INFO     | **************************************
[2025-06-06 17:07:29] 2025-06-06 15:07:11,867 | INFO     | 
[2025-06-06 17:07:29] 2025-06-06 15:07:11,872 | INFO     | architecture information:
[2025-06-06 17:07:29] 2025-06-06 15:07:11,872 | INFO     | executing command: cat /etc/os-release
[2025-06-06 17:07:29] 2025-06-06 15:07:11,885 | INFO     | cat /etc/os-release:
[2025-06-06 17:07:29] NAME="CentOS Linux"
[2025-06-06 17:07:29] VERSION="7 (Core)"
[2025-06-06 17:07:29] ID="centos"
[2025-06-06 17:07:29] ID_LIKE="rhel fedora"
[2025-06-06 17:07:29] VERSION_ID="7"
[2025-06-06 17:07:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 17:07:29] ANSI_COLOR="0;31"
[2025-06-06 17:07:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 17:07:29] HOME_URL="https://www.centos.org/"
[2025-06-06 17:07:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 17:07:29] 
[2025-06-06 17:07:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 17:07:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 17:07:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 17:07:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 17:07:29] 
[2025-06-06 17:07:29] 2025-06-06 15:07:11,885 | INFO     | **************************************
[2025-06-06 17:07:29] 2025-06-06 15:07:12,328 | INFO     | 4667s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-06 17:07:29] 2025-06-06 15:07:12,388 | INFO     | executing command: df -mP /scratch/boinc/var/slot72/slots/0
[2025-06-06 17:07:29] 2025-06-06 15:07:12,401 | INFO     | sufficient remaining disk space (3381101854720 B)
[2025-06-06 17:07:29] 2025-06-06 15:07:12,402 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 17:07:29] 2025-06-06 15:07:12,402 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 17:07:29] 2025-06-06 15:07:12,402 | INFO     | update_server=False
[2025-06-06 17:07:29] 2025-06-06 15:07:12,402 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 17:07:29] 2025-06-06 15:07:12,433 | INFO     | all data control threads have been joined
[2025-06-06 17:07:29] 2025-06-06 15:07:12,798 | INFO     | all job control threads have been joined
[2025-06-06 17:07:29] 2025-06-06 15:07:12,826 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-06 17:07:29] 2025-06-06 15:07:12,826 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-06 17:07:29] 2025-06-06 15:07:12,826 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 17:07:29] 2025-06-06 15:07:12,826 | INFO     | will abort loop
[2025-06-06 17:07:29] 2025-06-06 15:07:13,292 | INFO     | all payload control threads have been joined
[2025-06-06 17:07:29] 2025-06-06 15:07:13,333 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 17:07:29] 2025-06-06 15:07:13,333 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 17:07:29] 2025-06-06 15:07:13,333 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 17:07:29] 2025-06-06 15:07:13,407 | INFO     | [job] retrieve thread has finished
[2025-06-06 17:07:29] 2025-06-06 15:07:13,412 | INFO     | [data] copytool_in thread has finished
[2025-06-06 17:07:29] 2025-06-06 15:07:13,438 | INFO     | [data] control thread has finished
[2025-06-06 17:07:29] 2025-06-06 15:07:13,440 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 17:07:29] 2025-06-06 15:07:13,803 | INFO     | [job] control thread has finished
[2025-06-06 17:07:29] 2025-06-06 15:07:13,831 | INFO     | [job] job monitor thread has finished
[2025-06-06 17:07:29] 2025-06-06 15:07:14,002 | INFO     | [payload] validate_post thread has finished
[2025-06-06 17:07:29] 2025-06-06 15:07:14,298 | INFO     | [payload] control thread has finished
[2025-06-06 17:07:29] 2025-06-06 15:07:14,372 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 17:07:29] 2025-06-06 15:07:14,533 | INFO     | [job] validate thread has finished
[2025-06-06 17:07:29] 2025-06-06 15:07:14,795 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 17:07:29] 2025-06-06 15:07:14,801 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 17:07:29] 2025-06-06 15:07:14,943 | INFO     | [payload] failed_post thread has finished
[2025-06-06 17:07:29] 2025-06-06 15:07:15,008 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 17:07:29] 2025-06-06 15:07:15,382 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 17:07:29] 2025-06-06 15:07:15,445 | INFO     | [data] copytool_out thread has finished
[2025-06-06 17:07:29] 2025-06-06 15:07:16,387 | INFO     | [job] queue monitor thread has finished
[2025-06-06 17:07:29] 2025-06-06 15:07:19,014 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 17:07:29] 2025-06-06 15:07:22,923 | INFO     | job.realtimelogging is not enabled
[2025-06-06 17:07:29] 2025-06-06 15:07:23,929 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 17:07:29] 2025-06-06 15:07:24,212 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23221561087808)>', '<ExcThread(monitor, started 23221315258112)>']
[2025-06-06 17:07:29] 2025-06-06 15:07:24,388 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 17:07:29] 2025-06-06 15:07:24,388 | INFO     | [monitor] control thread has ended
[2025-06-06 17:07:29] 2025-06-06 15:07:29,238 | INFO     | all workflow threads have been joined
[2025-06-06 17:07:29] 2025-06-06 15:07:29,238 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 17:07:29] 2025-06-06 15:07:29,238 | INFO     | traces error code: 0
[2025-06-06 17:07:29] 2025-06-06 15:07:29,239 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 17:07:29] 2025-06-06 15:07:29,331 [wrapper] ==== pilot stdout END ====
[2025-06-06 17:07:29] 2025-06-06 15:07:29,334 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 17:07:29] 2025-06-06 15:07:29,336 [wrapper] pilotpid: 3975845
[2025-06-06 17:07:29] 2025-06-06 15:07:29,338 [wrapper] Pilot exit status: 0
[2025-06-06 17:07:29] 2025-06-06 15:07:29,346 [wrapper] pandaids: 6679572307
[2025-06-06 17:07:29] 2025-06-06 15:07:29,418 [wrapper] cleanup supervisor_pilot 4088879 3975846
[2025-06-06 17:07:29] 2025-06-06 15:07:29,420 [wrapper] Test setup, not cleaning
[2025-06-06 17:07:29] 2025-06-06 15:07:29,423 [wrapper] apfmon messages muted
[2025-06-06 17:07:29] 2025-06-06 15:07:29,425 [wrapper] ==== wrapper stdout END ====
[2025-06-06 17:07:29] 2025-06-06 15:07:29,427 [wrapper] ==== wrapper stderr END ====
[2025-06-06 17:07:29]  *** Error codes and diagnostics ***
[2025-06-06 17:07:29]     "exeErrorCode": 0,
[2025-06-06 17:07:29]     "exeErrorDiag": "",
[2025-06-06 17:07:29]     "pilotErrorCode": 0,
[2025-06-06 17:07:29]     "pilotErrorDiag": "",
[2025-06-06 17:07:29]  *** Listing of results directory ***
[2025-06-06 17:07:29] total 386912
[2025-06-06 17:07:29] -rw-r--r-- 1 boinc boinc    495897 Jun  4 11:04 pilot3.tar.gz
[2025-06-06 17:07:29] -rw-r--r-- 1 boinc boinc      5111 Jun  4 11:08 queuedata.json
[2025-06-06 17:07:29] -rwx------ 1 boinc boinc     37140 Jun  4 11:09 runpilot2-wrapper.sh
[2025-06-06 17:07:29] -rw-r--r-- 1 boinc boinc       100 Jun  6 15:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 17:07:29] -rwxr-xr-x 1 boinc boinc      7986 Jun  6 15:49 run_atlas
[2025-06-06 17:07:29] -rw-r--r-- 1 boinc boinc       105 Jun  6 15:49 job.xml
[2025-06-06 17:07:29] -rw-r--r-- 2 boinc boinc 214065004 Jun  6 15:49 EVNT.45006593._000076.pool.root.1
[2025-06-06 17:07:29] -rw-r--r-- 2 boinc boinc     15093 Jun  6 15:49 start_atlas.sh
[2025-06-06 17:07:29] drwxrwx--x 2 boinc boinc      4096 Jun  6 15:49 shared
[2025-06-06 17:07:29] -rw-r--r-- 2 boinc boinc    508879 Jun  6 15:49 input.tar.gz
[2025-06-06 17:07:29] -rw-r--r-- 1 boinc boinc      6687 Jun  6 15:49 init_data.xml
[2025-06-06 17:07:29] -rw-r--r-- 1 boinc boinc         0 Jun  6 15:49 boinc_lockfile
[2025-06-06 17:07:29] -rw-r--r-- 1 boinc boinc      2521 Jun  6 15:49 pandaJob.out
[2025-06-06 17:07:29] -rw------- 1 boinc boinc    985728 Jun  6 15:49 agis_schedconf.cvmfs.json
[2025-06-06 17:07:29] -rw------- 1 boinc boinc   1598969 Jun  6 15:49 agis_ddmendpoints.agis.ALL.json
[2025-06-06 17:07:29] drwx------ 4 boinc boinc      4096 Jun  6 15:49 pilot3
[2025-06-06 17:07:29] -rw------- 1 boinc boinc 176866998 Jun  6 17:06 HITS.45006595._056472.pool.root.1
[2025-06-06 17:07:29] -rw-r--r-- 1 boinc boinc       529 Jun  6 17:06 boinc_task_state.xml
[2025-06-06 17:07:29] -rw------- 1 boinc boinc      1028 Jun  6 17:06 memory_monitor_summary.json
[2025-06-06 17:07:29] -rw------- 1 boinc boinc        95 Jun  6 17:07 pilot_heartbeat.json
[2025-06-06 17:07:29] -rw------- 1 boinc boinc    250446 Jun  6 17:07 log.45006595._056472.job.log.tgz.1
[2025-06-06 17:07:29] -rw------- 1 boinc boinc      7686 Jun  6 17:07 heartbeat.json
[2025-06-06 17:07:29] -rw-r--r-- 1 boinc boinc        27 Jun  6 17:07 wrapper_checkpoint.txt
[2025-06-06 17:07:29] -rw-r--r-- 1 boinc boinc      8192 Jun  6 17:07 boinc_mmap_file
[2025-06-06 17:07:29] -rw------- 1 boinc boinc      4737 Jun  6 17:07 pilotlog.txt
[2025-06-06 17:07:29] -rw------- 1 boinc boinc    464906 Jun  6 17:07 log.45006595._056472.job.log.1
[2025-06-06 17:07:29] -rw------- 1 boinc boinc       357 Jun  6 17:07 output.list
[2025-06-06 17:07:29] -rw-r--r-- 1 boinc boinc       620 Jun  6 17:07 runtime_log
[2025-06-06 17:07:29] -rw------- 1 boinc boinc    737280 Jun  6 17:07 result.tar.gz
[2025-06-06 17:07:29] -rw-r--r-- 1 boinc boinc      9025 Jun  6 17:07 runtime_log.err
[2025-06-06 17:07:29] -rw------- 1 boinc boinc       661 Jun  6 17:07 1DKNDmNJzg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmBxnKDm3hJkmn.diag
[2025-06-06 17:07:29] -rw-r--r-- 1 boinc boinc     22544 Jun  6 17:07 stderr.txt
[2025-06-06 17:07:29] HITS file was successfully produced:
[2025-06-06 17:07:29] -rw------- 1 boinc boinc 176866998 Jun  6 17:06 shared/HITS.pool.root.1
[2025-06-06 17:07:29]  *** Contents of shared directory: ***
[2025-06-06 17:07:29] total 383016
[2025-06-06 17:07:29] -rw-r--r-- 2 boinc boinc 214065004 Jun  6 15:49 ATLAS.root_0
[2025-06-06 17:07:29] -rw-r--r-- 2 boinc boinc     15093 Jun  6 15:49 start_atlas.sh
[2025-06-06 17:07:29] -rw-r--r-- 2 boinc boinc    508879 Jun  6 15:49 input.tar.gz
[2025-06-06 17:07:29] -rw------- 1 boinc boinc 176866998 Jun  6 17:06 HITS.pool.root.1
[2025-06-06 17:07:29] -rw------- 1 boinc boinc    737280 Jun  6 17:07 result.tar.gz
17:07:30 (3971882): run_atlas exited; CPU time 17794.394015
17:07:30 (3971882): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN