Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:30:15 (340951): wrapper (7.7.26015): starting
09:30:15 (340951): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 09:30:15] Arguments: --nthreads 8
[2025-06-04 09:30:15] Threads: 8
[2025-06-04 09:30:15] Checking for CVMFS
[2025-06-04 09:30:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 09:30:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 09:30:15] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 09:30:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 09:30:16] 2.12.6.0 1636016 23550 455736 146781 0 68 26816634 32935936 16265 16776704 1 130919646 99.630 116906802 26392 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 09:30:16] CVMFS is ok
[2025-06-04 09:30:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 09:30:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 09:30:16] Further information can be found at the LHC@home message board.
[2025-06-04 09:30:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 09:30:16] Checking for apptainer binary...
[2025-06-04 09:30:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 09:30:16] Running /usr/bin/apptainer --version
[2025-06-04 09:30:16] apptainer version 1.4.1-1.el9
[2025-06-04 09:30:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 09:30:16] c6-2-11-4.aglt2.org
[2025-06-04 09:30:16] apptainer works
[2025-06-04 09:30:16] Set ATHENA_PROC_NUMBER=8
[2025-06-04 09:30:16] Set ATHENA_CORE_NUMBER=8
[2025-06-04 09:30:16] Starting ATLAS job with PandaID=6678365475
[2025-06-04 09:30:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 10:44:16]  *** The last 200 lines of the pilot log: ***
[2025-06-04 10:44:16]  guid=dd6cd7bf-b8f1-4512-b4bb-853ff2eeecba
[2025-06-04 10:44:16]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 10:44:16]  is_altstaged=None
[2025-06-04 10:44:16]  is_tar=False
[2025-06-04 10:44:16]  lfn=log.45006595._054506.job.log.tgz.1
[2025-06-04 10:44:16]  mtime=0
[2025-06-04 10:44:16]  protocol_id=None
[2025-06-04 10:44:16]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 10:44:16]  replicas=None
[2025-06-04 10:44:16]  scope=mc23_13p6TeV
[2025-06-04 10:44:16]  status=None
[2025-06-04 10:44:16]  status_code=0
[2025-06-04 10:44:16]  storage_token=
[2025-06-04 10:44:16]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6678365475/log.45006595._054506.job.log.tgz.1
[2025-06-04 10:44:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ad/2d/log.45006595._054506.job.log.tgz.1
[2025-06-04 10:44:16]  workdir=None
[2025-06-04 10:44:16] ]
[2025-06-04 10:44:16] 2025-06-04 14:43:48,672 | INFO     | transferring file log.45006595._054506.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6678365475/log.45006595._054506.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 10:44:16] 2025-06-04 14:43:48,672 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6678365475/log.45006595._054506.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._054506.job
[2025-06-04 10:44:16] 2025-06-04 14:43:48,690 | INFO     | adding to output.list: log.45006595._054506.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ad/2d/log.45006595._054506.job.log.tg
[2025-06-04 10:44:16] 2025-06-04 14:43:48,690 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 10:44:16] 2025-06-04 14:43:48,691 | INFO     | summary of transferred files:
[2025-06-04 10:44:16] 2025-06-04 14:43:48,691 | INFO     |  -- lfn=log.45006595._054506.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 10:44:16] 2025-06-04 14:43:48,691 | INFO     | stage-out finished correctly
[2025-06-04 10:44:16] 2025-06-04 14:43:50,965 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 10:44:16] 2025-06-04 14:43:53,203 | INFO     | job 6678365475 has state=finished
[2025-06-04 10:44:16] 2025-06-04 14:43:53,203 | INFO     | preparing for final server update for job 6678365475 in state='finished'
[2025-06-04 10:44:16] 2025-06-04 14:43:53,204 | INFO     | this job has now completed (state=finished)
[2025-06-04 10:44:16] 2025-06-04 14:43:53,204 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 10:44:16] 2025-06-04 14:43:53,204 | INFO     | log transfer has been attempted: DONE
[2025-06-04 10:44:16] 2025-06-04 14:43:53,204 | INFO     | job 6678365475 has finished - writing final server update
[2025-06-04 10:44:16] 2025-06-04 14:43:53,204 | INFO     | total number of processed events: 400 (read)
[2025-06-04 10:44:16] 2025-06-04 14:43:53,221 | INFO     | executing command: lscpu
[2025-06-04 10:44:16] 2025-06-04 14:43:53,311 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 10:44:16] 2025-06-04 14:43:54,501 | WARNING  | process 351544 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 10:44:16] 2025-06-04 14:43:54,501 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678365475/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 10:44:16] 2025-06-04 14:43:54,719 | INFO     | number of running child processes to parent process 351544: 1
[2025-06-04 10:44:16] 2025-06-04 14:43:54,720 | INFO     | maximum number of monitored processes: 6
[2025-06-04 10:44:16] 2025-06-04 14:43:56,283 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 10:44:16] 2025-06-04 14:43:56,283 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678365475/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 10:44:16] 2025-06-04 14:43:56,284 | INFO     | extracted standard info from prmon json
[2025-06-04 10:44:16] 2025-06-04 14:43:56,284 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 10:44:16] 2025-06-04 14:43:56,284 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 10:44:16] 2025-06-04 14:43:56,284 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 10:44:16] 2025-06-04 14:43:56,284 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 10:44:16] 2025-06-04 14:43:56,286 | INFO     | fitting pss+swap vs Time
[2025-06-04 10:44:16] 2025-06-04 14:43:56,286 | INFO     | sum of square deviations: 85136480.0
[2025-06-04 10:44:16] 2025-06-04 14:43:56,287 | INFO     | sum of deviations: 6437944270.0
[2025-06-04 10:44:16] 2025-06-04 14:43:56,287 | INFO     | mean x: 1749046107.0
[2025-06-04 10:44:16] 2025-06-04 14:43:56,287 | INFO     | mean y: 2282336.292307692
[2025-06-04 10:44:16] 2025-06-04 14:43:56,287 | INFO     | -- intersect: -132259015787.92491
[2025-06-04 10:44:16] 2025-06-04 14:43:56,287 | INFO     | intersect: -132259015787.92491
[2025-06-04 10:44:16] 2025-06-04 14:43:56,287 | INFO     | chi2: 0.767544094076004
[2025-06-04 10:44:16] 2025-06-04 14:43:56,287 | INFO     | -- intersect: -132259015787.92491
[2025-06-04 10:44:16] 2025-06-04 14:43:56,287 | INFO     | current memory leak: 75.62 B/s (using 65 data points, chi2=0.77)
[2025-06-04 10:44:16] 2025-06-04 14:43:56,288 | INFO     | ..............................
[2025-06-04 10:44:16] 2025-06-04 14:43:56,288 | INFO     | . Timing measurements:
[2025-06-04 10:44:16] 2025-06-04 14:43:56,288 | INFO     | . get job = 0 s
[2025-06-04 10:44:16] 2025-06-04 14:43:56,288 | INFO     | . initial setup = 2 s
[2025-06-04 10:44:16] 2025-06-04 14:43:56,288 | INFO     | . payload setup = 5 s
[2025-06-04 10:44:16] 2025-06-04 14:43:56,288 | INFO     | . stage-in = 0 s
[2025-06-04 10:44:16] 2025-06-04 14:43:56,288 | INFO     | . payload execution = 4381 s
[2025-06-04 10:44:16] 2025-06-04 14:43:56,288 | INFO     | . stage-out = 0 s
[2025-06-04 10:44:16] 2025-06-04 14:43:56,288 | INFO     | . log creation = 0 s
[2025-06-04 10:44:16] 2025-06-04 14:43:56,288 | INFO     | ..............................
[2025-06-04 10:44:16] 2025-06-04 14:43:56,382 | INFO     | 
[2025-06-04 10:44:16] 2025-06-04 14:43:56,382 | INFO     | job summary report
[2025-06-04 10:44:16] 2025-06-04 14:43:56,383 | INFO     | --------------------------------------------------
[2025-06-04 10:44:16] 2025-06-04 14:43:56,383 | INFO     | PanDA job id: 6678365475
[2025-06-04 10:44:16] 2025-06-04 14:43:56,383 | INFO     | task id: 45006595
[2025-06-04 10:44:16] 2025-06-04 14:43:56,383 | INFO     | errors: (none)
[2025-06-04 10:44:16] 2025-06-04 14:43:56,383 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 10:44:16] 2025-06-04 14:43:56,383 | INFO     | pilot state: finished 
[2025-06-04 10:44:16] 2025-06-04 14:43:56,383 | INFO     | transexitcode: 0
[2025-06-04 10:44:16] 2025-06-04 14:43:56,383 | INFO     | exeerrorcode: 0
[2025-06-04 10:44:16] 2025-06-04 14:43:56,383 | INFO     | exeerrordiag: 
[2025-06-04 10:44:16] 2025-06-04 14:43:56,383 | INFO     | exitcode: 0
[2025-06-04 10:44:16] 2025-06-04 14:43:56,383 | INFO     | exitmsg: OK
[2025-06-04 10:44:16] 2025-06-04 14:43:56,383 | INFO     | cpuconsumptiontime: 29149 s
[2025-06-04 10:44:16] 2025-06-04 14:43:56,383 | INFO     | nevents: 400
[2025-06-04 10:44:16] 2025-06-04 14:43:56,383 | INFO     | neventsw: 0
[2025-06-04 10:44:16] 2025-06-04 14:43:56,383 | INFO     | pid: 351544
[2025-06-04 10:44:16] 2025-06-04 14:43:56,383 | INFO     | pgrp: 351544
[2025-06-04 10:44:16] 2025-06-04 14:43:56,384 | INFO     | corecount: 8
[2025-06-04 10:44:16] 2025-06-04 14:43:56,384 | INFO     | event service: False
[2025-06-04 10:44:16] 2025-06-04 14:43:56,384 | INFO     | sizes: {0: 2396514, 1: 2397370, 5: 2397576, 12: 2397632, 4387: 2423635, 4389: 2432576, 4391: 2432760, 4397: 2432930}
[2025-06-04 10:44:16] 2025-06-04 14:43:56,384 | INFO     | --------------------------------------------------
[2025-06-04 10:44:16] 2025-06-04 14:43:56,384 | INFO     | 
[2025-06-04 10:44:16] 2025-06-04 14:43:56,384 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 10:44:16] 2025-06-04 14:43:56,398 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 10:44:16] 2025-06-04 14:43:56,399 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 10:44:16] 2025-06-04 14:43:56,399 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 10:44:16] 2025-06-04 14:43:56,399 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 10:44:16] 2025-06-04 14:43:56,399 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 10:44:16] 2025-06-04 14:43:56,399 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 10:44:16] 2025-06-04 14:43:56,399 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 10:44:16] 2025-06-04 14:43:56,399 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 10:44:16] 2025-06-04 14:43:56,399 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 10:44:16] 2025-06-04 14:43:56,399 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 10:44:16] 2025-06-04 14:43:56,399 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 10:44:16] 2025-06-04 14:43:56,399 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 10:44:16] 2025-06-04 14:43:56,399 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 10:44:16] 2025-06-04 14:43:56,400 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 10:44:16] 2025-06-04 14:43:56,400 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 10:44:16] 2025-06-04 14:43:56,400 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 10:44:16] 2025-06-04 14:43:56,400 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 10:44:16] 2025-06-04 14:43:56,400 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 10:44:16] 2025-06-04 14:43:56,400 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 10:44:16] 2025-06-04 14:43:56,400 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 10:44:16] 2025-06-04 14:43:56,400 | INFO     | job 6678365475 has completed (purged errors)
[2025-06-04 10:44:16] 2025-06-04 14:43:56,400 | INFO     | overall cleanup function is called
[2025-06-04 10:44:16] 2025-06-04 14:43:57,408 | INFO     | --- collectZombieJob: --- 10, [351544]
[2025-06-04 10:44:16] 2025-06-04 14:43:57,408 | INFO     | zombie collector waiting for pid 351544
[2025-06-04 10:44:16] 2025-06-04 14:43:57,408 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 10:44:16] 2025-06-04 14:43:57,408 | INFO     | collected zombie processes
[2025-06-04 10:44:16] 2025-06-04 14:43:57,409 | INFO     | will attempt to kill all subprocesses of pid=351544
[2025-06-04 10:44:16] 2025-06-04 14:43:57,745 | INFO     | process IDs to be killed: [351544] (in reverse order)
[2025-06-04 10:44:16] 2025-06-04 14:43:57,842 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 10:44:16] 2025-06-04 14:43:57,842 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 10:44:16] 2025-06-04 14:43:57,856 | INFO     | did not find any defunct processes belonging to 351544
[2025-06-04 10:44:16] 2025-06-04 14:43:57,871 | INFO     | did not find any defunct processes belonging to 351544
[2025-06-04 10:44:16] 2025-06-04 14:43:57,871 | INFO     | ready for new job
[2025-06-04 10:44:16] 2025-06-04 14:43:57,871 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 10:44:16] 2025-06-04 14:43:57,872 | INFO     | **************************************
[2025-06-04 10:44:16] 2025-06-04 14:43:57,873 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 10:44:16] 2025-06-04 14:43:57,873 | INFO     | **************************************
[2025-06-04 10:44:16] 2025-06-04 14:43:57,873 | INFO     | 
[2025-06-04 10:44:16] 2025-06-04 14:43:57,890 | INFO     | architecture information:
[2025-06-04 10:44:16] 2025-06-04 14:43:57,890 | INFO     | executing command: cat /etc/os-release
[2025-06-04 10:44:16] 2025-06-04 14:43:57,905 | INFO     | cat /etc/os-release:
[2025-06-04 10:44:16] NAME="CentOS Linux"
[2025-06-04 10:44:16] VERSION="7 (Core)"
[2025-06-04 10:44:16] ID="centos"
[2025-06-04 10:44:16] ID_LIKE="rhel fedora"
[2025-06-04 10:44:16] VERSION_ID="7"
[2025-06-04 10:44:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 10:44:16] ANSI_COLOR="0;31"
[2025-06-04 10:44:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 10:44:16] HOME_URL="https://www.centos.org/"
[2025-06-04 10:44:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 10:44:16] 
[2025-06-04 10:44:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 10:44:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 10:44:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 10:44:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 10:44:16] 
[2025-06-04 10:44:16] 2025-06-04 14:43:57,905 | INFO     | **************************************
[2025-06-04 10:44:16] 2025-06-04 14:43:58,408 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 10:44:16] 2025-06-04 14:43:58,421 | INFO     | sufficient remaining disk space (95527370752 B)
[2025-06-04 10:44:16] 2025-06-04 14:43:58,421 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 10:44:16] 2025-06-04 14:43:58,421 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 10:44:16] 2025-06-04 14:43:58,421 | INFO     | update_server=False
[2025-06-04 10:44:16] 2025-06-04 14:43:58,421 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 10:44:16] 2025-06-04 14:43:58,422 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:44:16] 2025-06-04 14:43:58,422 | INFO     | aborting loop
[2025-06-04 10:44:16] 2025-06-04 14:43:58,808 | INFO     | all payload control threads have been joined
[2025-06-04 10:44:16] 2025-06-04 14:43:59,293 | INFO     | all data control threads have been joined
[2025-06-04 10:44:16] 2025-06-04 14:43:59,302 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 10:44:16] 2025-06-04 14:43:59,427 | INFO     | [job] retrieve thread has finished
[2025-06-04 10:44:16] 2025-06-04 14:43:59,427 | INFO     | [job] job monitor thread has finished
[2025-06-04 10:44:16] 2025-06-04 14:43:59,529 | INFO     | PID=344815 has CPU usage=14.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 10:44:16] 2025-06-04 14:43:59,530 | INFO     | .. there are 21 such processes running
[2025-06-04 10:44:16] 2025-06-04 14:43:59,530 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 10:44:16] 2025-06-04 14:43:59,530 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 10:44:16] 2025-06-04 14:43:59,530 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 10:44:16] 2025-06-04 14:43:59,543 | INFO     | [payload] validate_post thread has finished
[2025-06-04 10:44:16] 2025-06-04 14:43:59,596 | INFO     | all job control threads have been joined
[2025-06-04 10:44:16] 2025-06-04 14:43:59,812 | INFO     | [payload] control thread has finished
[2025-06-04 10:44:16] 2025-06-04 14:43:59,979 | INFO     | [data] copytool_in thread has finished
[2025-06-04 10:44:16] 2025-06-04 14:44:00,107 | INFO     | [payload] failed_post thread has finished
[2025-06-04 10:44:16] 2025-06-04 14:44:00,251 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 10:44:16] 2025-06-04 14:44:00,299 | INFO     | [data] control thread has finished
[2025-06-04 10:44:16] 2025-06-04 14:44:00,376 | INFO     | [job] validate thread has finished
[2025-06-04 10:44:16] 2025-06-04 14:44:00,601 | INFO     | [job] control thread has finished
[2025-06-04 10:44:16] 2025-06-04 14:44:00,713 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 10:44:16] 2025-06-04 14:44:00,853 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 10:44:16] 2025-06-04 14:44:01,308 | INFO     | [data] copytool_out thread has finished
[2025-06-04 10:44:16] 2025-06-04 14:44:01,392 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:44:16] 2025-06-04 14:44:01,565 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 10:44:16] 2025-06-04 14:44:02,398 | INFO     | [job] queue monitor thread has finished
[2025-06-04 10:44:16] 2025-06-04 14:44:05,570 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 10:44:16] 2025-06-04 14:44:08,753 | INFO     | job.realtimelogging is not enabled
[2025-06-04 10:44:16] 2025-06-04 14:44:09,758 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 10:44:16] 2025-06-04 14:44:11,270 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140235371378496)>', '<ExcThread(monitor, started 140234868107008)>']
[2025-06-04 10:44:16] 2025-06-04 14:44:11,586 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 10:44:16] 2025-06-04 14:44:11,587 | INFO     | [monitor] control thread has ended
[2025-06-04 10:44:16] 2025-06-04 14:44:16,295 | INFO     | all workflow threads have been joined
[2025-06-04 10:44:16] 2025-06-04 14:44:16,295 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 10:44:16] 2025-06-04 14:44:16,296 | INFO     | traces error code: 0
[2025-06-04 10:44:16] 2025-06-04 14:44:16,296 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 10:44:16] 2025-06-04 14:44:16,448 [wrapper] ==== pilot stdout END ====
[2025-06-04 10:44:16] 2025-06-04 14:44:16,450 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 10:44:16] 2025-06-04 14:44:16,452 [wrapper] pilotpid: 344815
[2025-06-04 10:44:16] 2025-06-04 14:44:16,455 [wrapper] Pilot exit status: 0
[2025-06-04 10:44:16] 2025-06-04 14:44:16,464 [wrapper] pandaids: 6678365475
[2025-06-04 10:44:16] 2025-06-04 14:44:16,527 [wrapper] cleanup supervisor_pilot  575988 344816
[2025-06-04 10:44:16] 2025-06-04 14:44:16,530 [wrapper] Test setup, not cleaning
[2025-06-04 10:44:16] 2025-06-04 14:44:16,533 [wrapper] apfmon messages muted
[2025-06-04 10:44:16] 2025-06-04 14:44:16,535 [wrapper] ==== wrapper stdout END ====
[2025-06-04 10:44:16] 2025-06-04 14:44:16,537 [wrapper] ==== wrapper stderr END ====
[2025-06-04 10:44:16]  *** Error codes and diagnostics ***
[2025-06-04 10:44:16]     "exeErrorCode": 0,
[2025-06-04 10:44:16]     "exeErrorDiag": "",
[2025-06-04 10:44:16]     "pilotErrorCode": 0,
[2025-06-04 10:44:16]     "pilotErrorDiag": "",
[2025-06-04 10:44:16]  *** Listing of results directory ***
[2025-06-04 10:44:16] total 393272
[2025-06-04 10:44:16] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 01:59 pilot3.tar.gz
[2025-06-04 10:44:16] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 02:35 queuedata.json
[2025-06-04 10:44:16] -rwx------. 1 boincer umatlas     37140 Jun  4 02:37 runpilot2-wrapper.sh
[2025-06-04 10:44:16] -rw-r--r--. 1 boincer umatlas       100 Jun  4 09:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 10:44:16] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 09:30 run_atlas
[2025-06-04 10:44:16] -rw-r--r--. 1 boincer umatlas       105 Jun  4 09:30 job.xml
[2025-06-04 10:44:16] -rw-r--r--. 2 boincer umatlas 215536468 Jun  4 09:30 EVNT.45006593._002181.pool.root.1
[2025-06-04 10:44:16] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 09:30 start_atlas.sh
[2025-06-04 10:44:16] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 09:30 shared
[2025-06-04 10:44:16] -rw-r--r--. 2 boincer umatlas    508880 Jun  4 09:30 input.tar.gz
[2025-06-04 10:44:16] -rw-r--r--. 1 boincer umatlas         0 Jun  4 09:30 boinc_lockfile
[2025-06-04 10:44:16] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 09:30 pandaJob.out
[2025-06-04 10:44:16] -rw-------. 1 boincer umatlas    986819 Jun  4 09:30 agis_schedconf.cvmfs.json
[2025-06-04 10:44:16] -rw-------. 1 boincer umatlas   1598969 Jun  4 09:30 agis_ddmendpoints.agis.ALL.json
[2025-06-04 10:44:16] drwx------. 4 boincer umatlas      4096 Jun  4 09:30 pilot3
[2025-06-04 10:44:16] -rw-r--r--. 1 boincer umatlas      6857 Jun  4 10:40 init_data.xml
[2025-06-04 10:44:16] -rw-------. 1 boincer umatlas        95 Jun  4 10:43 pilot_heartbeat.json
[2025-06-04 10:44:16] -rw-------. 1 boincer umatlas 181845342 Jun  4 10:43 HITS.45006595._054506.pool.root.1
[2025-06-04 10:44:16] -rw-r--r--. 1 boincer umatlas       529 Jun  4 10:43 boinc_task_state.xml
[2025-06-04 10:44:16] -rw-------. 1 boincer umatlas      1038 Jun  4 10:43 memory_monitor_summary.json
[2025-06-04 10:44:16] -rw-------. 1 boincer umatlas    314903 Jun  4 10:43 log.45006595._054506.job.log.tgz.1
[2025-06-04 10:44:16] -rw-------. 1 boincer umatlas      7720 Jun  4 10:43 heartbeat.json
[2025-06-04 10:44:16] -rw-r--r--. 1 boincer umatlas        27 Jun  4 10:44 wrapper_checkpoint.txt
[2025-06-04 10:44:16] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 10:44 boinc_mmap_file
[2025-06-04 10:44:16] -rw-------. 1 boincer umatlas      4820 Jun  4 10:44 pilotlog.txt
[2025-06-04 10:44:16] -rw-------. 1 boincer umatlas    433814 Jun  4 10:44 log.45006595._054506.job.log.1
[2025-06-04 10:44:16] -rw-------. 1 boincer umatlas       357 Jun  4 10:44 output.list
[2025-06-04 10:44:16] -rw-r--r--. 1 boincer umatlas       620 Jun  4 10:44 runtime_log
[2025-06-04 10:44:16] -rw-------. 1 boincer umatlas    768000 Jun  4 10:44 result.tar.gz
[2025-06-04 10:44:16] -rw-------. 1 boincer umatlas       652 Jun  4 10:44 RyUKDmnvwg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmNZnKDmnzBj0m.diag
[2025-06-04 10:44:16] -rw-r--r--. 1 boincer umatlas      8664 Jun  4 10:44 runtime_log.err
[2025-06-04 10:44:16] -rw-r--r--. 1 boincer umatlas     21351 Jun  4 10:44 stderr.txt
[2025-06-04 10:44:16] HITS file was successfully produced:
[2025-06-04 10:44:16] -rw-------. 1 boincer umatlas 181845342 Jun  4 10:43 shared/HITS.pool.root.1
[2025-06-04 10:44:16]  *** Contents of shared directory: ***
[2025-06-04 10:44:16] total 389348
[2025-06-04 10:44:16] -rw-r--r--. 2 boincer umatlas 215536468 Jun  4 09:30 ATLAS.root_0
[2025-06-04 10:44:16] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 09:30 start_atlas.sh
[2025-06-04 10:44:16] -rw-r--r--. 2 boincer umatlas    508880 Jun  4 09:30 input.tar.gz
[2025-06-04 10:44:16] -rw-------. 1 boincer umatlas 181845342 Jun  4 10:43 HITS.pool.root.1
[2025-06-04 10:44:16] -rw-------. 1 boincer umatlas    768000 Jun  4 10:44 result.tar.gz
10:44:17 (340951): run_atlas exited; CPU time 29320.722198
10:44:17 (340951): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN