Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:30:57 (2091): wrapper (7.7.26015): starting
02:30:57 (2091): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 02:30:57] Arguments: --nthreads 8
[2025-06-05 02:30:57] Threads: 8
[2025-06-05 02:30:57] Checking for CVMFS
[2025-06-05 02:30:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 02:30:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 02:30:58] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 02:30:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 02:30:58] 2.11.2.0 13342 33919 98180 146799 1 59 20744009 25165825 3136 130560 0 17519163 99.773 18553418 2010 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 02:30:58] CVMFS is ok
[2025-06-05 02:30:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 02:30:59] Checking for apptainer binary...
[2025-06-05 02:30:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 02:30:59] Running /usr/bin/apptainer --version
[2025-06-05 02:30:59] apptainer version 1.3.2-1.el7
[2025-06-05 02:30:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 02:31:08] cg-vwn278.simple-grid.lan
[2025-06-05 02:31:08] apptainer works
[2025-06-05 02:31:08] Set ATHENA_PROC_NUMBER=8
[2025-06-05 02:31:08] Set ATHENA_CORE_NUMBER=8
[2025-06-05 02:31:08] Starting ATLAS job with PandaID=6679374221
[2025-06-05 02:31:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 06:54:46]  *** The last 200 lines of the pilot log: ***
[2025-06-05 06:54:46] 2025-06-05 04:28:23,503 | INFO     | extracted standard info from prmon json
[2025-06-05 06:54:46] 2025-06-05 04:28:23,503 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 06:54:46] 2025-06-05 04:28:23,504 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 06:54:46] 2025-06-05 04:28:23,504 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 06:54:46] 2025-06-05 04:28:23,504 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 06:54:46] 2025-06-05 04:28:23,509 | INFO     | fitting pss+swap vs Time
[2025-06-05 06:54:46] 2025-06-05 04:28:23,510 | INFO     | sum of square deviations: 3392567795.5
[2025-06-05 06:54:46] 2025-06-05 04:28:23,512 | INFO     | sum of deviations: 90958893277.99998
[2025-06-05 06:54:46] 2025-06-05 04:28:23,512 | INFO     | mean x: 1749090896.5
[2025-06-05 06:54:46] 2025-06-05 04:28:23,512 | INFO     | mean y: 2412416.6306306305
[2025-06-05 06:54:46] 2025-06-05 04:28:23,512 | INFO     | -- intersect: -46892854466.25776
[2025-06-05 06:54:46] 2025-06-05 04:28:23,512 | INFO     | intersect: -46892854466.25776
[2025-06-05 06:54:46] 2025-06-05 04:28:23,513 | INFO     | chi2: 7.910592642374786
[2025-06-05 06:54:46] 2025-06-05 04:28:23,513 | INFO     | sum of square deviations: 3168461268.0
[2025-06-05 06:54:46] 2025-06-05 04:28:23,515 | INFO     | sum of deviations: 103308094093.0
[2025-06-05 06:54:46] 2025-06-05 04:28:23,516 | INFO     | mean x: 1749090744.0
[2025-06-05 06:54:46] 2025-06-05 04:28:23,516 | INFO     | mean y: 2420638.244239631
[2025-06-05 06:54:46] 2025-06-05 04:28:23,516 | INFO     | -- intersect: -57026911859.29518
[2025-06-05 06:54:46] 2025-06-05 04:28:23,516 | INFO     | intersect: -57026911859.29518
[2025-06-05 06:54:46] 2025-06-05 04:28:23,516 | INFO     | chi2: 7.218229680033957
[2025-06-05 06:54:46] 2025-06-05 04:28:23,516 | INFO     | current chi2=7.218229680033957 (change=8.752352619347858 %)
[2025-06-05 06:54:46] 2025-06-05 04:28:23,517 | INFO     | right removable region: 216
[2025-06-05 06:54:46] 2025-06-05 04:28:23,517 | INFO     | sum of square deviations: 3168461268.0
[2025-06-05 06:54:46] 2025-06-05 04:28:23,519 | INFO     | sum of deviations: 14826689829.000002
[2025-06-05 06:54:46] 2025-06-05 04:28:23,519 | INFO     | mean x: 1749091049.0
[2025-06-05 06:54:46] 2025-06-05 04:28:23,519 | INFO     | mean y: 2464181.198156682
[2025-06-05 06:54:46] 2025-06-05 04:28:23,519 | INFO     | -- intersect: -8182338558.263087
[2025-06-05 06:54:46] 2025-06-05 04:28:23,519 | INFO     | intersect: -8182338558.263087
[2025-06-05 06:54:46] 2025-06-05 04:28:23,520 | INFO     | chi2: 2.9302673305347406
[2025-06-05 06:54:46] 2025-06-05 04:28:23,520 | INFO     | current chi2=2.9302673305347406 (change=62.95767633339966 %)
[2025-06-05 06:54:46] 2025-06-05 04:28:23,520 | INFO     | sum of square deviations: 2954447953.0
[2025-06-05 06:54:46] 2025-06-05 04:28:23,522 | INFO     | sum of deviations: -31836445736.5
[2025-06-05 06:54:46] 2025-06-05 04:28:23,522 | INFO     | mean x: 1749091201.5
[2025-06-05 06:54:46] 2025-06-05 04:28:23,522 | INFO     | mean y: 2497281.4481132077
[2025-06-05 06:54:46] 2025-06-05 04:28:23,523 | INFO     | -- intersect: 18850298295.576973
[2025-06-05 06:54:46] 2025-06-05 04:28:23,523 | INFO     | intersect: 18850298295.576973
[2025-06-05 06:54:46] 2025-06-05 04:28:23,523 | INFO     | chi2: 0.9722040639485361
[2025-06-05 06:54:46] 2025-06-05 04:28:23,523 | INFO     | current chi2=0.9722040639485361 (change=66.82200105711448 %)
[2025-06-05 06:54:46] 2025-06-05 04:28:23,524 | INFO     | sum of square deviations: 2750295288.0
[2025-06-05 06:54:46] 2025-06-05 04:28:23,525 | INFO     | sum of deviations: -36648181460.0
[2025-06-05 06:54:46] 2025-06-05 04:28:23,525 | INFO     | mean x: 1749091354.0
[2025-06-05 06:54:46] 2025-06-05 04:28:23,525 | INFO     | mean y: 2500846.8212560387
[2025-06-05 06:54:46] 2025-06-05 04:28:23,526 | INFO     | -- intersect: 23309459052.79739
[2025-06-05 06:54:46] 2025-06-05 04:28:23,526 | INFO     | intersect: 23309459052.79739
[2025-06-05 06:54:46] 2025-06-05 04:28:23,526 | INFO     | chi2: 0.9305294864006128
[2025-06-05 06:54:46] 2025-06-05 04:28:23,526 | INFO     | current chi2=0.9305294864006128 (change=4.286608037685523 %)
[2025-06-05 06:54:46] 2025-06-05 04:28:23,526 | INFO     | left removable region: 30
[2025-06-05 06:54:46] 2025-06-05 04:28:23,527 | INFO     | sum of square deviations: 1995283922.5
[2025-06-05 06:54:46] 2025-06-05 04:28:23,528 | INFO     | sum of deviations: -1036772469.9999986
[2025-06-05 06:54:46] 2025-06-05 04:28:23,528 | INFO     | mean x: 1749091628.5
[2025-06-05 06:54:46] 2025-06-05 04:28:23,528 | INFO     | mean y: 2493286.8279569894
[2025-06-05 06:54:46] 2025-06-05 04:28:23,528 | INFO     | -- intersect: 911341409.8881301
[2025-06-05 06:54:46] 2025-06-05 04:28:23,529 | INFO     | intersect: 911341409.8881301
[2025-06-05 06:54:46] 2025-06-05 04:28:23,529 | INFO     | chi2: 0.038016553964084765
[2025-06-05 06:54:46] 2025-06-05 04:28:23,529 | INFO     | -- intersect: 911341409.8881301
[2025-06-05 06:54:46] 2025-06-05 04:28:23,529 | INFO     | current memory leak: -0.52 B/s (using 186 data points, chi2=0.04)
[2025-06-05 06:54:46] 2025-06-05 04:28:23,530 | INFO     | ..............................
[2025-06-05 06:54:46] 2025-06-05 04:28:23,530 | INFO     | . Timing measurements:
[2025-06-05 06:54:46] 2025-06-05 04:28:23,531 | INFO     | . get job = 0 s
[2025-06-05 06:54:46] 2025-06-05 04:28:23,531 | INFO     | . initial setup = 3 s
[2025-06-05 06:54:46] 2025-06-05 04:28:23,531 | INFO     | . payload setup = 152 s
[2025-06-05 06:54:46] 2025-06-05 04:28:23,531 | INFO     | . stage-in = 0 s
[2025-06-05 06:54:46] 2025-06-05 04:28:23,531 | INFO     | . payload execution = 13651 s
[2025-06-05 06:54:46] 2025-06-05 04:28:23,531 | INFO     | . stage-out = 2 s
[2025-06-05 06:54:46] 2025-06-05 04:28:23,531 | INFO     | . log creation = 0 s
[2025-06-05 06:54:46] 2025-06-05 04:28:23,531 | INFO     | ..............................
[2025-06-05 06:54:46] 2025-06-05 04:28:23,661 | INFO     | 
[2025-06-05 06:54:46] 2025-06-05 04:28:23,661 | INFO     | job summary report
[2025-06-05 06:54:46] 2025-06-05 04:28:23,662 | INFO     | --------------------------------------------------
[2025-06-05 06:54:46] 2025-06-05 04:28:23,662 | INFO     | PanDA job id: 6679374221
[2025-06-05 06:54:46] 2025-06-05 04:28:23,662 | INFO     | task id: 45006595
[2025-06-05 06:54:46] 2025-06-05 04:28:23,662 | INFO     | errors: (none)
[2025-06-05 06:54:46] 2025-06-05 04:28:23,662 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 06:54:46] 2025-06-05 04:28:23,662 | INFO     | pilot state: finished 
[2025-06-05 06:54:46] 2025-06-05 04:28:23,662 | INFO     | transexitcode: 0
[2025-06-05 06:54:46] 2025-06-05 04:28:23,662 | INFO     | exeerrorcode: 0
[2025-06-05 06:54:46] 2025-06-05 04:28:23,662 | INFO     | exeerrordiag: 
[2025-06-05 06:54:46] 2025-06-05 04:28:23,662 | INFO     | exitcode: 0
[2025-06-05 06:54:46] 2025-06-05 04:28:23,663 | INFO     | exitmsg: OK
[2025-06-05 06:54:46] 2025-06-05 04:28:23,663 | INFO     | cpuconsumptiontime: 49950 s
[2025-06-05 06:54:46] 2025-06-05 04:28:23,663 | INFO     | nevents: 400
[2025-06-05 06:54:46] 2025-06-05 04:28:23,663 | INFO     | neventsw: 0
[2025-06-05 06:54:46] 2025-06-05 04:28:23,663 | INFO     | pid: 13918
[2025-06-05 06:54:46] 2025-06-05 04:28:23,663 | INFO     | pgrp: 13918
[2025-06-05 06:54:46] 2025-06-05 04:28:23,663 | INFO     | corecount: 8
[2025-06-05 06:54:46] 2025-06-05 04:28:23,663 | INFO     | event service: False
[2025-06-05 06:54:46] 2025-06-05 04:28:23,663 | INFO     | sizes: {0: 2397070, 1: 2397269, 12: 2397269, 23: 2397297, 33: 2397325, 44: 2397381, 55: 2397537, 65: 2397565, 76: 2397593, 87: 2397649, 91: 2397883, 98: 2398191, 1
[2025-06-05 06:54:46] 2025-06-05 04:28:23,663 | INFO     | --------------------------------------------------
[2025-06-05 06:54:46] 2025-06-05 04:28:23,663 | INFO     | 
[2025-06-05 06:54:46] 2025-06-05 04:28:23,664 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-05 06:54:46] 2025-06-05 04:28:23,701 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 06:54:46] 2025-06-05 04:28:23,701 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 06:54:46] 2025-06-05 04:28:23,701 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 06:54:46] 2025-06-05 04:28:23,701 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 06:54:46] 2025-06-05 04:28:23,702 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 06:54:46] 2025-06-05 04:28:23,702 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 06:54:46] 2025-06-05 04:28:23,702 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 06:54:46] 2025-06-05 04:28:23,702 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 06:54:46] 2025-06-05 04:28:23,702 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 06:54:46] 2025-06-05 04:28:23,702 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 06:54:46] 2025-06-05 04:28:23,702 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 06:54:46] 2025-06-05 04:28:23,702 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 06:54:46] 2025-06-05 04:28:23,702 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 06:54:46] 2025-06-05 04:28:23,702 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 06:54:46] 2025-06-05 04:28:23,703 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 06:54:46] 2025-06-05 04:28:23,703 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 06:54:46] 2025-06-05 04:28:23,703 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 06:54:46] 2025-06-05 04:28:23,703 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 06:54:46] 2025-06-05 04:28:23,703 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 06:54:46] 2025-06-05 04:28:23,703 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 06:54:46] 2025-06-05 04:28:23,703 | INFO     | job 6679374221 has completed (purged errors)
[2025-06-05 06:54:46] 2025-06-05 04:28:23,703 | INFO     | overall cleanup function is called
[2025-06-05 06:54:46] 2025-06-05 04:28:24,713 | INFO     | --- collectZombieJob: --- 10, [13918]
[2025-06-05 06:54:46] 2025-06-05 04:28:24,713 | INFO     | zombie collector waiting for pid 13918
[2025-06-05 06:54:46] 2025-06-05 04:28:24,713 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 06:54:46] 2025-06-05 04:28:24,714 | INFO     | collected zombie processes
[2025-06-05 06:54:46] 2025-06-05 04:28:24,714 | INFO     | will attempt to kill all subprocesses of pid=13918
[2025-06-05 06:54:46] 2025-06-05 04:28:24,825 | INFO     | process IDs to be killed: [13918] (in reverse order)
[2025-06-05 06:54:46] 2025-06-05 04:28:26,035 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 06:54:46] 2025-06-05 04:28:26,035 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 06:54:46] 2025-06-05 04:28:26,039 | INFO     | did not find any defunct processes belonging to 13918
[2025-06-05 06:54:46] 2025-06-05 04:28:26,042 | INFO     | did not find any defunct processes belonging to 13918
[2025-06-05 06:54:46] 2025-06-05 04:28:26,043 | INFO     | ready for new job
[2025-06-05 06:54:46] 2025-06-05 04:28:26,043 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 06:54:46] 2025-06-05 04:28:26,045 | INFO     | **************************************
[2025-06-05 06:54:46] 2025-06-05 04:28:26,045 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 06:54:46] 2025-06-05 04:28:26,046 | INFO     | **************************************
[2025-06-05 06:54:46] 2025-06-05 04:28:26,046 | INFO     | 
[2025-06-05 06:54:46] 2025-06-05 04:28:26,046 | INFO     | pilot is running in a VM
[2025-06-05 06:54:46] 2025-06-05 04:28:26,047 | INFO     | architecture information:
[2025-06-05 06:54:46] 2025-06-05 04:28:26,056 | INFO     | executing command: cat /etc/os-release
[2025-06-05 06:54:46] 2025-06-05 04:28:26,250 | INFO     | cat /etc/os-release:
[2025-06-05 06:54:46] NAME="CentOS Linux"
[2025-06-05 06:54:46] VERSION="7 (Core)"
[2025-06-05 06:54:46] ID="centos"
[2025-06-05 06:54:46] ID_LIKE="rhel fedora"
[2025-06-05 06:54:46] VERSION_ID="7"
[2025-06-05 06:54:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 06:54:46] ANSI_COLOR="0;31"
[2025-06-05 06:54:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 06:54:46] HOME_URL="https://www.centos.org/"
[2025-06-05 06:54:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 06:54:46] 
[2025-06-05 06:54:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 06:54:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 06:54:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 06:54:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 06:54:46] 
[2025-06-05 06:54:46] 2025-06-05 04:28:26,251 | INFO     | **************************************
[2025-06-05 06:54:46] 2025-06-05 04:28:26,754 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-05 06:54:46] 2025-06-05 04:28:26,948 | INFO     | sufficient remaining disk space (497027121152 B)
[2025-06-05 06:54:46] 2025-06-05 04:28:26,948 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 06:54:46] 2025-06-05 04:28:26,948 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 06:54:46] 2025-06-05 04:28:26,948 | INFO     | update_server=False
[2025-06-05 06:54:46] 2025-06-05 04:28:26,949 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 06:54:46] 2025-06-05 04:28:26,949 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 06:54:46] 2025-06-05 04:28:26,949 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 06:54:46] 2025-06-05 04:28:26,949 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 06:54:46] 2025-06-05 04:28:26,949 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 06:54:46] 2025-06-05 04:28:26,950 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 06:54:46] 2025-06-05 04:28:26,951 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 06:54:46] 2025-06-05 04:28:26,982 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 06:54:46] 2025-06-05 04:28:26,982 | INFO     | aborting loop
[2025-06-05 06:54:46] 2025-06-05 04:28:27,244 | INFO     | all data control threads have been joined
[2025-06-05 06:54:46] 2025-06-05 04:28:27,822 | INFO     | all payload control threads have been joined
[2025-06-05 06:54:46] 2025-06-05 04:28:27,955 | INFO     | [job] retrieve thread has finished
[2025-06-05 06:54:46] 2025-06-05 04:28:27,988 | INFO     | [job] job monitor thread has finished
[2025-06-05 06:54:46] 2025-06-05 04:28:28,133 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 06:54:46] 2025-06-05 04:28:28,249 | INFO     | [data] control thread has finished
[2025-06-05 06:54:46] 2025-06-05 04:28:28,322 | INFO     | all job control threads have been joined
[2025-06-05 06:54:46] 2025-06-05 04:28:28,415 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 06:54:46] 2025-06-05 04:28:28,496 | INFO     | [job] validate thread has finished
[2025-06-05 06:54:46] 2025-06-05 04:28:28,514 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 06:54:46] 2025-06-05 04:28:28,520 | INFO     | [payload] failed_post thread has finished
[2025-06-05 06:54:46] 2025-06-05 04:28:28,685 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 06:54:46] 2025-06-05 04:28:28,827 | INFO     | [payload] control thread has finished
[2025-06-05 06:54:46] 2025-06-05 04:28:28,957 | INFO     | [data] copytool_out thread has finished
[2025-06-05 06:54:46] 2025-06-05 04:28:29,016 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 06:54:46] 2025-06-05 04:28:29,199 | INFO     | [data] copytool_in thread has finished
[2025-06-05 06:54:46] 2025-06-05 04:28:29,232 | INFO     | [payload] validate_post thread has finished
[2025-06-05 06:54:46] 2025-06-05 04:28:29,329 | INFO     | [job] control thread has finished
[2025-06-05 06:54:46] 2025-06-05 04:28:29,692 | INFO     | [job] queue monitor thread has finished
[2025-06-05 06:54:46] 2025-06-05 04:28:30,959 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 06:54:46] 2025-06-05 04:28:32,123 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140305306785600)>', '<ExcThread(monitor, started 140304996869888)>']
[2025-06-05 06:54:46] 2025-06-05 04:28:32,984 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 06:54:46] 2025-06-05 04:28:32,984 | INFO     | [monitor] control thread has ended
[2025-06-05 06:54:46] 2025-06-05 04:28:37,149 | INFO     | all workflow threads have been joined
[2025-06-05 06:54:46] 2025-06-05 04:28:37,149 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 06:54:46] 2025-06-05 04:28:37,150 | INFO     | traces error code: 0
[2025-06-05 06:54:46] 2025-06-05 04:28:37,150 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 06:54:46] 2025-06-05 04:28:37,567 [wrapper] ==== pilot stdout END ====
[2025-06-05 06:54:46] 2025-06-05 04:28:37,619 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 06:54:46] 2025-06-05 04:28:37,678 [wrapper] pilotpid: 7276
[2025-06-05 06:54:46] 2025-06-05 04:28:37,726 [wrapper] Pilot exit status: 0
[2025-06-05 06:54:46] 2025-06-05 04:28:38,089 [wrapper] pandaids: 6679374221
[2025-06-05 06:54:46] 2025-06-05 04:28:38,186 [wrapper] cleanup supervisor_pilot  8926 7277
[2025-06-05 06:54:46] 2025-06-05 04:28:38,201 [wrapper] Test setup, not cleaning
[2025-06-05 06:54:46] 2025-06-05 04:28:38,205 [wrapper] apfmon messages muted
[2025-06-05 06:54:46] 2025-06-05 04:28:38,209 [wrapper] ==== wrapper stdout END ====
[2025-06-05 06:54:46] 2025-06-05 04:28:38,212 [wrapper] ==== wrapper stderr END ====
[2025-06-05 06:54:46]  *** Error codes and diagnostics ***
[2025-06-05 06:54:46]     "exeErrorCode": 0,
[2025-06-05 06:54:46]     "exeErrorDiag": "",
[2025-06-05 06:54:46]     "pilotErrorCode": 0,
[2025-06-05 06:54:46]     "pilotErrorDiag": "",
[2025-06-05 06:54:46]  *** Listing of results directory ***
[2025-06-05 06:54:46] total 389028
[2025-06-05 06:54:46] -rw-r--r--. 1 boinc boinc    495897 Jun  4 10:46 pilot3.tar.gz
[2025-06-05 06:54:46] -rw-r--r--. 1 boinc boinc      5111 Jun  4 11:01 queuedata.json
[2025-06-05 06:54:46] -rwx------. 1 boinc boinc     37140 Jun  4 11:02 runpilot2-wrapper.sh
[2025-06-05 06:54:46] -rw-r--r--. 1 boinc boinc       100 Jun  5 02:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 06:54:46] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 02:30 run_atlas
[2025-06-05 06:54:46] -rw-r--r--. 1 boinc boinc       105 Jun  5 02:30 job.xml
[2025-06-05 06:54:46] -rw-r--r--. 1 boinc boinc      6391 Jun  5 02:30 init_data.xml
[2025-06-05 06:54:46] -rw-r--r--. 2 boinc boinc 214578563 Jun  5 02:30 EVNT.45006593._001610.pool.root.1
[2025-06-05 06:54:46] -rw-r--r--. 2 boinc boinc     15093 Jun  5 02:30 start_atlas.sh
[2025-06-05 06:54:46] drwxrwx--x. 2 boinc boinc        68 Jun  5 02:30 shared
[2025-06-05 06:54:46] -rw-r--r--. 2 boinc boinc    508878 Jun  5 02:30 input.tar.gz
[2025-06-05 06:54:46] -rw-r--r--. 1 boinc boinc         0 Jun  5 02:30 boinc_lockfile
[2025-06-05 06:54:46] -rw-r--r--. 1 boinc boinc      2524 Jun  5 02:31 pandaJob.out
[2025-06-05 06:54:46] -rw-------. 1 boinc boinc    987117 Jun  5 02:34 agis_schedconf.cvmfs.json
[2025-06-05 06:54:46] drwx------. 4 boinc boinc      4096 Jun  5 02:34 pilot3
[2025-06-05 06:54:46] -rw-------. 1 boinc boinc 176785134 Jun  5 06:26 HITS.45006595._056226.pool.root.1
[2025-06-05 06:54:46] -rw-r--r--. 1 boinc boinc       531 Jun  5 06:27 boinc_task_state.xml
[2025-06-05 06:54:46] -rw-------. 1 boinc boinc      1018 Jun  5 06:27 memory_monitor_summary.json
[2025-06-05 06:54:46] -rw-------. 1 boinc boinc   1598969 Jun  5 06:27 agis_ddmendpoints.agis.ALL.json
[2025-06-05 06:54:46] -rw-------. 1 boinc boinc    398024 Jun  5 06:27 log.45006595._056226.job.log.tgz.1
[2025-06-05 06:54:46] -rw-------. 1 boinc boinc        95 Jun  5 06:27 pilot_heartbeat.json
[2025-06-05 06:54:46] -rw-------. 1 boinc boinc      7687 Jun  5 06:28 heartbeat.json
[2025-06-05 06:54:46] -rw-------. 1 boinc boinc      4539 Jun  5 06:28 pilotlog.txt
[2025-06-05 06:54:46] -rw-------. 1 boinc boinc   1191390 Jun  5 06:28 log.45006595._056226.job.log.1
[2025-06-05 06:54:46] -rw-------. 1 boinc boinc       357 Jun  5 06:28 output.list
[2025-06-05 06:54:46] -rw-r--r--. 1 boinc boinc       620 Jun  5 06:28 runtime_log
[2025-06-05 06:54:46] -rw-------. 1 boinc boinc   1607680 Jun  5 06:28 result.tar.gz
[2025-06-05 06:54:46] -rw-r--r--. 1 boinc boinc      8659 Jun  5 06:28 runtime_log.err
[2025-06-05 06:54:46] -rw-------. 1 boinc boinc       656 Jun  5 06:28 3twMDm5Bzg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmpunKDmVnqHCo.diag
[2025-06-05 06:54:46] -rw-r--r--. 1 boinc boinc      8192 Jun  5 06:54 boinc_mmap_file
[2025-06-05 06:54:46] -rw-r--r--. 1 boinc boinc        28 Jun  5 06:54 wrapper_checkpoint.txt
[2025-06-05 06:54:46] -rw-r--r--. 1 boinc boinc     20504 Jun  5 06:54 stderr.txt
[2025-06-05 06:54:46] HITS file was successfully produced:
[2025-06-05 06:54:46] -rw-------. 1 boinc boinc 176785134 Jun  5 06:26 shared/HITS.pool.root.1
[2025-06-05 06:54:46]  *** Contents of shared directory: ***
[2025-06-05 06:54:46] total 384284
[2025-06-05 06:54:46] -rw-r--r--. 2 boinc boinc 214578563 Jun  5 02:30 ATLAS.root_0
[2025-06-05 06:54:46] -rw-r--r--. 2 boinc boinc     15093 Jun  5 02:30 start_atlas.sh
[2025-06-05 06:54:46] -rw-r--r--. 2 boinc boinc    508878 Jun  5 02:30 input.tar.gz
[2025-06-05 06:54:46] -rw-------. 1 boinc boinc 176785134 Jun  5 06:26 HITS.pool.root.1
[2025-06-05 06:54:46] -rw-------. 1 boinc boinc   1607680 Jun  5 06:28 result.tar.gz
06:54:48 (2091): run_atlas exited; CPU time 50137.763852
06:54:48 (2091): called boinc_finish(0)

</stderr_txt>
]]>

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