Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
15:27:57 (2203801): wrapper (7.7.26015): starting
15:27:57 (2203801): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 15:27:57] Arguments: --nthreads 12
[2025-06-04 15:27:57] Threads: 12
[2025-06-04 15:27:57] Checking for CVMFS
[2025-06-04 15:27:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 15:27:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 15:27:59] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 15:28:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 15:28:01] 2.12.7.0 29207 2088 76684 146786 1 58 2215359 4096000 17284 130560 17 27089458 99.999 545206 140 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-04 15:28:01] CVMFS is ok
[2025-06-04 15:28:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 15:28:01] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-04 15:28:01] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-04 15:28:01] Further information can be found at the LHC@home message board.
[2025-06-04 15:28:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 15:28:01] Checking for apptainer binary...
[2025-06-04 15:28:01] apptainer is not installed, using version from CVMFS
[2025-06-04 15:28:01] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 15:28:03] epyc7v12
[2025-06-04 15:28:03] apptainer works
[2025-06-04 15:28:03] Set ATHENA_PROC_NUMBER=12
[2025-06-04 15:28:03] Set ATHENA_CORE_NUMBER=12
[2025-06-04 15:28:04] Starting ATLAS job with PandaID=6679504777
[2025-06-04 15:28:04] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 20:09:22]  *** The last 200 lines of the pilot log: ***
[2025-06-04 20:09:22] 2025-06-04 20:08:56,075 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 20:09:22] 2025-06-04 20:08:56,085 | INFO     | fitting pss+swap vs Time
[2025-06-04 20:09:22] 2025-06-04 20:08:56,090 | INFO     | sum of square deviations: 6103348208.166689
[2025-06-04 20:09:22] 2025-06-04 20:08:56,092 | INFO     | sum of deviations: 119120867154.22223
[2025-06-04 20:09:22] 2025-06-04 20:08:56,092 | INFO     | mean x: 1749059463.9444444
[2025-06-04 20:09:22] 2025-06-04 20:08:56,092 | INFO     | mean y: 2597800.0814814814
[2025-06-04 20:09:22] 2025-06-04 20:08:56,092 | INFO     | -- intersect: -34134317372.245693
[2025-06-04 20:09:22] 2025-06-04 20:08:56,093 | INFO     | intersect: -34134317372.245693
[2025-06-04 20:09:22] 2025-06-04 20:08:56,093 | INFO     | chi2: 5.443768468974873
[2025-06-04 20:09:22] 2025-06-04 20:08:56,097 | INFO     | sum of square deviations: 5770550659.660403
[2025-06-04 20:09:22] 2025-06-04 20:08:56,100 | INFO     | sum of deviations: 136441655360.86781
[2025-06-04 20:09:22] 2025-06-04 20:08:56,100 | INFO     | mean x: 1749059311.45283
[2025-06-04 20:09:22] 2025-06-04 20:08:56,100 | INFO     | mean y: 2605599.109433962
[2025-06-04 20:09:22] 2025-06-04 20:08:56,100 | INFO     | -- intersect: -41352987974.86813
[2025-06-04 20:09:22] 2025-06-04 20:08:56,100 | INFO     | intersect: -41352987974.86813
[2025-06-04 20:09:22] 2025-06-04 20:08:56,101 | INFO     | chi2: 4.629161180770929
[2025-06-04 20:09:22] 2025-06-04 20:08:56,101 | INFO     | current chi2=4.629161180770929 (change=14.964032597024543 %)
[2025-06-04 20:09:22] 2025-06-04 20:08:56,101 | INFO     | right removable region: 264
[2025-06-04 20:09:22] 2025-06-04 20:08:56,105 | INFO     | sum of square deviations: 5770477459.660403
[2025-06-04 20:09:22] 2025-06-04 20:08:56,108 | INFO     | sum of deviations: 27968201887.188633
[2025-06-04 20:09:22] 2025-06-04 20:08:56,108 | INFO     | mean x: 1749059616.45283
[2025-06-04 20:09:22] 2025-06-04 20:08:56,108 | INFO     | mean y: 2639502.2150943396
[2025-06-04 20:09:22] 2025-06-04 20:08:56,108 | INFO     | -- intersect: -8474657707.184339
[2025-06-04 20:09:22] 2025-06-04 20:08:56,108 | INFO     | intersect: -8474657707.184339
[2025-06-04 20:09:22] 2025-06-04 20:08:56,108 | INFO     | chi2: 1.5325796435219026
[2025-06-04 20:09:22] 2025-06-04 20:08:56,109 | INFO     | current chi2=1.5325796435219026 (change=71.84708254481467 %)
[2025-06-04 20:09:22] 2025-06-04 20:08:56,109 | INFO     | sum of square deviations: 5449932523.615366
[2025-06-04 20:09:22] 2025-06-04 20:08:56,115 | INFO     | sum of deviations: -6188481125.692303
[2025-06-04 20:09:22] 2025-06-04 20:08:56,116 | INFO     | mean x: 1749059768.9615386
[2025-06-04 20:09:22] 2025-06-04 20:08:56,116 | INFO     | mean y: 2655669.3307692306
[2025-06-04 20:09:22] 2025-06-04 20:08:56,116 | INFO     | -- intersect: 1988739592.5764468
[2025-06-04 20:09:22] 2025-06-04 20:08:56,116 | INFO     | intersect: 1988739592.5764468
[2025-06-04 20:09:22] 2025-06-04 20:08:56,116 | INFO     | chi2: 0.8984932043219981
[2025-06-04 20:09:22] 2025-06-04 20:08:56,116 | INFO     | current chi2=0.8984932043219981 (change=41.37380017280926 %)
[2025-06-04 20:09:22] 2025-06-04 20:08:56,117 | INFO     | sum of square deviations: 5141480837.529404
[2025-06-04 20:09:22] 2025-06-04 20:08:56,119 | INFO     | sum of deviations: -9702003341.176468
[2025-06-04 20:09:22] 2025-06-04 20:08:56,119 | INFO     | mean x: 1749059921.4705882
[2025-06-04 20:09:22] 2025-06-04 20:08:56,120 | INFO     | mean y: 2657370.6431372548
[2025-06-04 20:09:22] 2025-06-04 20:08:56,120 | INFO     | -- intersect: 3303143308.1108465
[2025-06-04 20:09:22] 2025-06-04 20:08:56,120 | INFO     | intersect: 3303143308.1108465
[2025-06-04 20:09:22] 2025-06-04 20:08:56,120 | INFO     | chi2: 0.8676475620204223
[2025-06-04 20:09:22] 2025-06-04 20:08:56,120 | INFO     | current chi2=0.8676475620204223 (change=3.4330412465224946 %)
[2025-06-04 20:09:22] 2025-06-04 20:08:56,120 | INFO     | left removable region: 30
[2025-06-04 20:09:22] 2025-06-04 20:08:56,121 | INFO     | sum of square deviations: 3972896115.982887
[2025-06-04 20:09:22] 2025-06-04 20:08:56,123 | INFO     | sum of deviations: 9699538135.008553
[2025-06-04 20:09:22] 2025-06-04 20:08:56,123 | INFO     | mean x: 1749060196.008547
[2025-06-04 20:09:22] 2025-06-04 20:08:56,123 | INFO     | mean y: 2666343.4957264955
[2025-06-04 20:09:22] 2025-06-04 20:08:56,123 | INFO     | -- intersect: -4267537451.5041604
[2025-06-04 20:09:22] 2025-06-04 20:08:56,123 | INFO     | intersect: -4267537451.5041604
[2025-06-04 20:09:22] 2025-06-04 20:08:56,123 | INFO     | chi2: 0.0008517856144454924
[2025-06-04 20:09:22] 2025-06-04 20:08:56,124 | INFO     | -- intersect: -4267537451.5041604
[2025-06-04 20:09:22] 2025-06-04 20:08:56,124 | INFO     | current memory leak: 2.44 B/s (using 234 data points, chi2=0.00)
[2025-06-04 20:09:22] 2025-06-04 20:08:56,124 | INFO     | ..............................
[2025-06-04 20:09:22] 2025-06-04 20:08:56,125 | INFO     | . Timing measurements:
[2025-06-04 20:09:22] 2025-06-04 20:08:56,125 | INFO     | . get job = 0 s
[2025-06-04 20:09:22] 2025-06-04 20:08:56,125 | INFO     | . initial setup = 8 s
[2025-06-04 20:09:22] 2025-06-04 20:08:56,125 | INFO     | . payload setup = 111 s
[2025-06-04 20:09:22] 2025-06-04 20:08:56,125 | INFO     | . stage-in = 0 s
[2025-06-04 20:09:22] 2025-06-04 20:08:56,125 | INFO     | . payload execution = 16467 s
[2025-06-04 20:09:22] 2025-06-04 20:08:56,125 | INFO     | . stage-out = 1 s
[2025-06-04 20:09:22] 2025-06-04 20:08:56,125 | INFO     | . log creation = 0 s
[2025-06-04 20:09:22] 2025-06-04 20:08:56,125 | INFO     | ..............................
[2025-06-04 20:09:22] 2025-06-04 20:08:56,281 | INFO     | 
[2025-06-04 20:09:22] 2025-06-04 20:08:56,281 | INFO     | job summary report
[2025-06-04 20:09:22] 2025-06-04 20:08:56,281 | INFO     | --------------------------------------------------
[2025-06-04 20:09:22] 2025-06-04 20:08:56,282 | INFO     | PanDA job id: 6679504777
[2025-06-04 20:09:22] 2025-06-04 20:08:56,282 | INFO     | task id: 44871837
[2025-06-04 20:09:22] 2025-06-04 20:08:56,282 | INFO     | errors: (none)
[2025-06-04 20:09:22] 2025-06-04 20:08:56,282 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 20:09:22] 2025-06-04 20:08:56,282 | INFO     | pilot state: finished 
[2025-06-04 20:09:22] 2025-06-04 20:08:56,282 | INFO     | transexitcode: 0
[2025-06-04 20:09:22] 2025-06-04 20:08:56,282 | INFO     | exeerrorcode: 0
[2025-06-04 20:09:22] 2025-06-04 20:08:56,282 | INFO     | exeerrordiag: 
[2025-06-04 20:09:22] 2025-06-04 20:08:56,282 | INFO     | exitcode: 0
[2025-06-04 20:09:22] 2025-06-04 20:08:56,282 | INFO     | exitmsg: OK
[2025-06-04 20:09:22] 2025-06-04 20:08:56,282 | INFO     | cpuconsumptiontime: 58857 s
[2025-06-04 20:09:22] 2025-06-04 20:08:56,283 | INFO     | nevents: 400
[2025-06-04 20:09:22] 2025-06-04 20:08:56,283 | INFO     | neventsw: 0
[2025-06-04 20:09:22] 2025-06-04 20:08:56,283 | INFO     | pid: 2219867
[2025-06-04 20:09:22] 2025-06-04 20:08:56,283 | INFO     | pgrp: 2219867
[2025-06-04 20:09:22] 2025-06-04 20:08:56,283 | INFO     | corecount: 12
[2025-06-04 20:09:22] 2025-06-04 20:08:56,283 | INFO     | event service: False
[2025-06-04 20:09:22] 2025-06-04 20:08:56,283 | INFO     | sizes: {0: 2397139, 1: 2397223, 2: 2397422, 13: 2397422, 24: 2397478, 35: 2397506, 46: 2397662, 54: 2397896, 57: 2397924, 16582: 2428889, 16583: 2428888, 16585: 24
[2025-06-04 20:09:22] 2025-06-04 20:08:56,283 | INFO     | --------------------------------------------------
[2025-06-04 20:09:22] 2025-06-04 20:08:56,283 | INFO     | 
[2025-06-04 20:09:22] 2025-06-04 20:08:56,283 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/15
[2025-06-04 20:09:22] 2025-06-04 20:08:56,654 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 20:09:22] 2025-06-04 20:08:56,654 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 20:09:22] 2025-06-04 20:08:56,654 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 20:09:22] 2025-06-04 20:08:56,654 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 20:09:22] 2025-06-04 20:08:56,655 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 20:09:22] 2025-06-04 20:08:56,655 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 20:09:22] 2025-06-04 20:08:56,655 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 20:09:22] 2025-06-04 20:08:56,655 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 20:09:22] 2025-06-04 20:08:56,655 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 20:09:22] 2025-06-04 20:08:56,655 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 20:09:22] 2025-06-04 20:08:56,655 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 20:09:22] 2025-06-04 20:08:56,655 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 20:09:22] 2025-06-04 20:08:56,655 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 20:09:22] 2025-06-04 20:08:56,655 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 20:09:22] 2025-06-04 20:08:56,656 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 20:09:22] 2025-06-04 20:08:56,656 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 20:09:22] 2025-06-04 20:08:56,656 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 20:09:22] 2025-06-04 20:08:56,656 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 20:09:22] 2025-06-04 20:08:56,656 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 20:09:22] 2025-06-04 20:08:56,656 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 20:09:22] 2025-06-04 20:08:56,656 | INFO     | job 6679504777 has completed (purged errors)
[2025-06-04 20:09:22] 2025-06-04 20:08:56,656 | INFO     | overall cleanup function is called
[2025-06-04 20:09:22] 2025-06-04 20:08:57,681 | INFO     | --- collectZombieJob: --- 10, [2219867]
[2025-06-04 20:09:22] 2025-06-04 20:08:57,682 | INFO     | zombie collector waiting for pid 2219867
[2025-06-04 20:09:22] 2025-06-04 20:08:57,682 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 20:09:22] 2025-06-04 20:08:57,682 | INFO     | collected zombie processes
[2025-06-04 20:09:22] 2025-06-04 20:08:57,682 | INFO     | will attempt to kill all subprocesses of pid=2219867
[2025-06-04 20:09:22] 2025-06-04 20:08:58,978 | INFO     | process IDs to be killed: [2219867] (in reverse order)
[2025-06-04 20:09:22] 2025-06-04 20:09:00,182 | INFO     | PID=2207920 has CPU usage=7.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 20:09:22] 2025-06-04 20:09:00,183 | INFO     | .. there are 30 such processes running
[2025-06-04 20:09:22] 2025-06-04 20:09:01,681 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 20:09:22] 2025-06-04 20:09:01,681 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 20:09:22] 2025-06-04 20:09:01,702 | INFO     | did not find any defunct processes belonging to 2219867
[2025-06-04 20:09:22] 2025-06-04 20:09:01,722 | INFO     | did not find any defunct processes belonging to 2219867
[2025-06-04 20:09:22] 2025-06-04 20:09:01,722 | INFO     | ready for new job
[2025-06-04 20:09:22] 2025-06-04 20:09:01,724 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 20:09:22] 2025-06-04 20:09:01,727 | INFO     | **************************************
[2025-06-04 20:09:22] 2025-06-04 20:09:01,727 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 20:09:22] 2025-06-04 20:09:01,727 | INFO     | **************************************
[2025-06-04 20:09:22] 2025-06-04 20:09:01,727 | INFO     | 
[2025-06-04 20:09:22] 2025-06-04 20:09:01,772 | INFO     | architecture information:
[2025-06-04 20:09:22] 2025-06-04 20:09:01,781 | INFO     | executing command: cat /etc/os-release
[2025-06-04 20:09:22] 2025-06-04 20:09:01,914 | INFO     | cat /etc/os-release:
[2025-06-04 20:09:22] NAME="CentOS Linux"
[2025-06-04 20:09:22] VERSION="7 (Core)"
[2025-06-04 20:09:22] ID="centos"
[2025-06-04 20:09:22] ID_LIKE="rhel fedora"
[2025-06-04 20:09:22] VERSION_ID="7"
[2025-06-04 20:09:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 20:09:22] ANSI_COLOR="0;31"
[2025-06-04 20:09:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 20:09:22] HOME_URL="https://www.centos.org/"
[2025-06-04 20:09:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 20:09:22] 
[2025-06-04 20:09:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 20:09:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 20:09:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 20:09:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 20:09:22] 
[2025-06-04 20:09:22] 2025-06-04 20:09:01,915 | INFO     | **************************************
[2025-06-04 20:09:22] 2025-06-04 20:09:02,418 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/15
[2025-06-04 20:09:22] 2025-06-04 20:09:02,590 | INFO     | sufficient remaining disk space (317487841280 B)
[2025-06-04 20:09:22] 2025-06-04 20:09:02,590 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 20:09:22] 2025-06-04 20:09:02,591 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 20:09:22] 2025-06-04 20:09:02,591 | INFO     | update_server=False
[2025-06-04 20:09:22] 2025-06-04 20:09:02,591 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 20:09:22] 2025-06-04 20:09:02,591 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 20:09:22] 2025-06-04 20:09:02,593 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 20:09:22] 2025-06-04 20:09:02,594 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 20:09:22] 2025-06-04 20:09:02,594 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 20:09:22] 2025-06-04 20:09:02,594 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 20:09:22] 2025-06-04 20:09:02,809 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 20:09:22] 2025-06-04 20:09:02,810 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 20:09:22] 2025-06-04 20:09:02,810 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 20:09:22] 2025-06-04 20:09:02,810 | INFO     | will abort loop
[2025-06-04 20:09:22] 2025-06-04 20:09:03,598 | INFO     | [job] retrieve thread has finished
[2025-06-04 20:09:22] 2025-06-04 20:09:03,598 | INFO     | all payload control threads have been joined
[2025-06-04 20:09:22] 2025-06-04 20:09:03,696 | INFO     | all data control threads have been joined
[2025-06-04 20:09:22] 2025-06-04 20:09:03,702 | INFO     | [payload] failed_post thread has finished
[2025-06-04 20:09:22] 2025-06-04 20:09:03,818 | INFO     | [job] job monitor thread has finished
[2025-06-04 20:09:22] 2025-06-04 20:09:03,822 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 20:09:22] 2025-06-04 20:09:03,889 | INFO     | [payload] validate_post thread has finished
[2025-06-04 20:09:22] 2025-06-04 20:09:04,049 | INFO     | all job control threads have been joined
[2025-06-04 20:09:22] 2025-06-04 20:09:04,062 | INFO     | [job] validate thread has finished
[2025-06-04 20:09:22] 2025-06-04 20:09:04,281 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 20:09:22] 2025-06-04 20:09:04,287 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 20:09:22] 2025-06-04 20:09:04,597 | INFO     | [data] copytool_out thread has finished
[2025-06-04 20:09:22] 2025-06-04 20:09:04,604 | INFO     | [payload] control thread has finished
[2025-06-04 20:09:22] 2025-06-04 20:09:04,705 | INFO     | [data] control thread has finished
[2025-06-04 20:09:22] 2025-06-04 20:09:04,725 | INFO     | [data] copytool_in thread has finished
[2025-06-04 20:09:22] 2025-06-04 20:09:05,053 | INFO     | [job] control thread has finished
[2025-06-04 20:09:22] 2025-06-04 20:09:05,325 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 20:09:22] 2025-06-04 20:09:05,809 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 20:09:22] 2025-06-04 20:09:06,329 | INFO     | [job] queue monitor thread has finished
[2025-06-04 20:09:22] 2025-06-04 20:09:09,825 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 20:09:22] 2025-06-04 20:09:13,141 | INFO     | job.realtimelogging is not enabled
[2025-06-04 20:09:22] 2025-06-04 20:09:14,145 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 20:09:22] 2025-06-04 20:09:14,889 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140111841793856)>', '<ExcThread(monitor, started 140111396189952)>']
[2025-06-04 20:09:22] 2025-06-04 20:09:15,681 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 20:09:22] 2025-06-04 20:09:15,682 | INFO     | [monitor] control thread has ended
[2025-06-04 20:09:22] 2025-06-04 20:09:19,917 | INFO     | all workflow threads have been joined
[2025-06-04 20:09:22] 2025-06-04 20:09:19,918 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 20:09:22] 2025-06-04 20:09:19,918 | INFO     | traces error code: 0
[2025-06-04 20:09:22] 2025-06-04 20:09:19,918 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 20:09:22] 2025-06-04 20:09:20,369 [wrapper] ==== pilot stdout END ====
[2025-06-04 20:09:22] 2025-06-04 20:09:20,433 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 20:09:22] 2025-06-04 20:09:20,505 [wrapper] pilotpid: 2207920
[2025-06-04 20:09:22] 2025-06-04 20:09:20,561 [wrapper] Pilot exit status: 0
[2025-06-04 20:09:22] 2025-06-04 20:09:20,785 [wrapper] pandaids: 6679504777
[2025-06-04 20:09:22] 2025-06-04 20:09:21,317 [wrapper] cleanup supervisor_pilot 3732668 2207921
[2025-06-04 20:09:22] 2025-06-04 20:09:21,362 [wrapper] Test setup, not cleaning
[2025-06-04 20:09:22] 2025-06-04 20:09:21,410 [wrapper] apfmon messages muted
[2025-06-04 20:09:22] 2025-06-04 20:09:21,465 [wrapper] ==== wrapper stdout END ====
[2025-06-04 20:09:22] 2025-06-04 20:09:21,533 [wrapper] ==== wrapper stderr END ====
[2025-06-04 20:09:22]  *** Error codes and diagnostics ***
[2025-06-04 20:09:22]     "exeErrorCode": 0,
[2025-06-04 20:09:22]     "exeErrorDiag": "",
[2025-06-04 20:09:22]     "pilotErrorCode": 0,
[2025-06-04 20:09:22]     "pilotErrorDiag": "",
[2025-06-04 20:09:22]  *** Listing of results directory ***
[2025-06-04 20:09:22] total 424476
[2025-06-04 20:09:22] -rw-r--r-- 1 boinc boinc    495897 Jun  4 09:04 pilot3.tar.gz
[2025-06-04 20:09:22] -rw-r--r-- 1 boinc boinc      5111 Jun  4 09:06 queuedata.json
[2025-06-04 20:09:22] -rwx------ 1 boinc boinc     37140 Jun  4 09:07 runpilot2-wrapper.sh
[2025-06-04 20:09:22] -rw-rw-r-- 1 boinc boinc       100 Jun  4 15:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 20:09:22] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 15:27 run_atlas
[2025-06-04 20:09:22] -rw-rw-r-- 1 boinc boinc       105 Jun  4 15:27 job.xml
[2025-06-04 20:09:22] -rw-rw-r-- 1 boinc boinc      6951 Jun  4 15:27 init_data.xml
[2025-06-04 20:09:22] -rw-r--r-- 2 boinc boinc 227322494 Jun  4 15:27 EVNT.44871834._002667.pool.root.1
[2025-06-04 20:09:22] -rw-r--r-- 2 boinc boinc     15093 Jun  4 15:27 start_atlas.sh
[2025-06-04 20:09:22] drwxrwx--x 2 boinc boinc      4096 Jun  4 15:27 shared
[2025-06-04 20:09:22] -rw-r--r-- 2 boinc boinc    508882 Jun  4 15:27 input.tar.gz
[2025-06-04 20:09:22] -rw-rw-r-- 1 boinc boinc         0 Jun  4 15:27 boinc_lockfile
[2025-06-04 20:09:22] -rw-rw-r-- 1 boinc boinc      2559 Jun  4 15:28 pandaJob.out
[2025-06-04 20:09:22] -rw------- 1 boinc boinc    990989 Jun  4 15:29 agis_schedconf.cvmfs.json
[2025-06-04 20:09:22] drwx------ 4 boinc boinc      4096 Jun  4 15:29 pilot3
[2025-06-04 20:09:22] -rw------- 1 boinc boinc 199935812 Jun  4 20:07 HITS.44871837._102195.pool.root.1
[2025-06-04 20:09:22] -rw-rw-r-- 1 boinc boinc       531 Jun  4 20:07 boinc_task_state.xml
[2025-06-04 20:09:22] -rw------- 1 boinc boinc      1023 Jun  4 20:07 memory_monitor_summary.json
[2025-06-04 20:09:22] -rw------- 1 boinc boinc   1598969 Jun  4 20:08 agis_ddmendpoints.agis.ALL.json
[2025-06-04 20:09:22] -rw------- 1 boinc boinc    463264 Jun  4 20:08 log.44871837._102195.job.log.tgz.1
[2025-06-04 20:09:22] -rw------- 1 boinc boinc        95 Jun  4 20:08 pilot_heartbeat.json
[2025-06-04 20:09:22] -rw------- 1 boinc boinc      7657 Jun  4 20:08 heartbeat.json
[2025-06-04 20:09:22] -rw------- 1 boinc boinc      4759 Jun  4 20:09 pilotlog.txt
[2025-06-04 20:09:22] -rw-rw-r-- 1 boinc boinc      8192 Jun  4 20:09 boinc_mmap_file
[2025-06-04 20:09:22] -rw-rw-r-- 1 boinc boinc        28 Jun  4 20:09 wrapper_checkpoint.txt
[2025-06-04 20:09:22] -rw------- 1 boinc boinc   1321664 Jun  4 20:09 log.44871837._102195.job.log.1
[2025-06-04 20:09:22] -rw------- 1 boinc boinc       357 Jun  4 20:09 output.list
[2025-06-04 20:09:22] -rw-rw-r-- 1 boinc boinc       620 Jun  4 20:09 runtime_log
[2025-06-04 20:09:22] -rw------- 1 boinc boinc   1802240 Jun  4 20:09 result.tar.gz
[2025-06-04 20:09:22] -rw-rw-r-- 1 boinc boinc      8978 Jun  4 20:09 runtime_log.err
[2025-06-04 20:09:22] -rw------- 1 boinc boinc       657 Jun  4 20:09 KnQNDmyGzg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmhvnKDm7fRnGo.diag
[2025-06-04 20:09:22] -rw-rw-r-- 1 boinc boinc     21224 Jun  4 20:09 stderr.txt
[2025-06-04 20:09:22] HITS file was successfully produced:
[2025-06-04 20:09:22] -rw------- 1 boinc boinc 199935812 Jun  4 20:07 shared/HITS.pool.root.1
[2025-06-04 20:09:22]  *** Contents of shared directory: ***
[2025-06-04 20:09:22] total 419532
[2025-06-04 20:09:22] -rw-r--r-- 2 boinc boinc 227322494 Jun  4 15:27 ATLAS.root_0
[2025-06-04 20:09:22] -rw-r--r-- 2 boinc boinc     15093 Jun  4 15:27 start_atlas.sh
[2025-06-04 20:09:22] -rw-r--r-- 2 boinc boinc    508882 Jun  4 15:27 input.tar.gz
[2025-06-04 20:09:22] -rw------- 1 boinc boinc 199935812 Jun  4 20:07 HITS.pool.root.1
[2025-06-04 20:09:22] -rw------- 1 boinc boinc   1802240 Jun  4 20:09 result.tar.gz
20:09:24 (2203801): run_atlas exited; CPU time 59871.371996
20:09:24 (2203801): called boinc_finish(0)

</stderr_txt>
]]>

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