Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-04 16:16:44 (3123568): Detected: vboxwrapper 26206
2025-06-04 16:16:44 (3123568): Detected: BOINC client v8.2.2
2025-06-04 16:16:45 (3123568): Detected: VirtualBox VboxManage Interface (Version: 7.0.20)
2025-06-04 16:16:45 (3123568): Successfully copied 'init_data.xml' to the shared directory.
2025-06-04 16:16:46 (3123568): Create VM. (boinc_85ec36a19bed65ef, slot#25)
2025-06-04 16:16:46 (3123568): Setting Memory Size for VM. (4096MB)
2025-06-04 16:16:47 (3123568): Setting CPU Count for VM. (1)
2025-06-04 16:16:47 (3123568): Setting Chipset Options for VM.
2025-06-04 16:16:47 (3123568): Setting Graphics Controller Options for VM.
2025-06-04 16:16:48 (3123568): Setting Boot Options for VM.
2025-06-04 16:16:48 (3123568): Setting Network Configuration for NAT.
2025-06-04 16:16:48 (3123568): Enabling VM Network Access.
2025-06-04 16:16:49 (3123568): Disabling USB Support for VM.
2025-06-04 16:16:49 (3123568): Disabling COM Port Support for VM.
2025-06-04 16:16:49 (3123568): Disabling LPT Port Support for VM.
2025-06-04 16:16:49 (3123568): Disabling Audio Support for VM.
2025-06-04 16:16:50 (3123568): Disabling Clipboard Support for VM.
2025-06-04 16:16:50 (3123568): Disabling Drag and Drop Support for VM.
2025-06-04 16:16:50 (3123568): Adding storage controller(s) to VM.
2025-06-04 16:16:51 (3123568): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-04 16:16:51 (3123568): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-04 16:16:52 (3123568): forwarding host port 43553 to guest port 80
2025-06-04 16:16:52 (3123568): Enabling remote desktop for VM.
2025-06-04 16:16:53 (3123568): Enabling shared directory for VM.
2025-06-04 16:16:53 (3123568): Starting VM using VBoxManage interface. (boinc_85ec36a19bed65ef, slot#25)
2025-06-04 16:16:55 (3123568): Successfully started VM. (PID = '3124377')
2025-06-04 16:16:55 (3123568): Reporting VM Process ID to BOINC.
2025-06-04 16:16:55 (3123568): Guest Log: BIOS: VirtualBox 7.0.20
2025-06-04 16:16:55 (3123568): Guest Log: CPUID EDX: 0x178bfbff
2025-06-04 16:16:55 (3123568): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-04 16:16:55 (3123568): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-04 16:16:55 (3123568): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-04 16:16:55 (3123568): Detected: Web Application Enabled (http://localhost:43553)
2025-06-04 16:16:55 (3123568): Detected: Remote Desktop Enabled (localhost:49135)
2025-06-04 16:16:55 (3123568): Preference change detected
2025-06-04 16:16:55 (3123568): Setting CPU throttle for VM. (100%)
2025-06-04 16:16:55 (3123568): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 16:16:57 (3123568): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-04 16:16:57 (3123568): Guest Log: BIOS: Booting from Hard Disk...
2025-06-04 16:17:00 (3123568): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-04 16:17:00 (3123568): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-04 16:17:00 (3123568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-04 16:17:00 (3123568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-04 16:17:00 (3123568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-04 16:17:00 (3123568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-04 16:17:00 (3123568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-04 16:17:00 (3123568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-04 16:17:00 (3123568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-04 16:17:00 (3123568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-04 16:17:00 (3123568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-04 16:17:00 (3123568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-04 16:17:00 (3123568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-04 16:17:00 (3123568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-04 16:17:00 (3123568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-04 16:17:00 (3123568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-04 16:17:00 (3123568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-04 16:17:00 (3123568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-04 16:17:00 (3123568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-04 16:17:00 (3123568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-04 16:17:00 (3123568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-04 16:17:00 (3123568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-04 16:17:00 (3123568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-04 16:17:00 (3123568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-04 16:17:00 (3123568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-04 16:17:00 (3123568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-04 16:17:00 (3123568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-04 16:17:00 (3123568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-04 16:17:00 (3123568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-04 16:17:00 (3123568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-04 16:17:00 (3123568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-04 16:17:00 (3123568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-04 16:17:06 (3123568): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-04 16:17:06 (3123568): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-04 16:17:19 (3123568): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-04 16:17:19 (3123568): Guest Log: 00:00:00.000218 main     Log opened 2025-06-04T14:17:16.549255000Z
2025-06-04 16:17:19 (3123568): Guest Log: 00:00:00.000344 main     OS Product: Linux
2025-06-04 16:17:19 (3123568): Guest Log: 00:00:00.000387 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-04 16:17:19 (3123568): Guest Log: 00:00:00.000414 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-04 16:17:19 (3123568): Guest Log: 00:00:00.000439 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-04 16:17:19 (3123568): Guest Log: 00:00:00.000449 main     Process ID: 1239
2025-06-04 16:17:19 (3123568): Guest Log: 00:00:00.000450 main     Package type: LINUX_64BITS_GENERIC
2025-06-04 16:17:19 (3123568): Guest Log: 00:00:00.002500 main     5.2.32 r132073 started. Verbose level = 0
2025-06-04 16:17:19 (3123568): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-04 16:17:19 (3123568): Guest Log: [INFO] Mounting shared directory
2025-06-04 16:17:19 (3123568): Guest Log: [INFO] Checking for init_data.xml
2025-06-04 16:17:21 (3123568): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-04 16:17:21 (3123568): Guest Log: [INFO] Detected branch: prod
2025-06-04 16:17:21 (3123568): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-04 16:17:21 (3123568): Guest Log: Copying input files
2025-06-04 16:17:22 (3123568): Guest Log: Copied input files into RunAtlas.
2025-06-04 16:17:22 (3123568): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-06-04 16:17:30 (3123568): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-04 16:17:30 (3123568): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-04 16:17:30 (3123568): Guest Log: 2.6.3.0 1508 0 29536 146781 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-06-04 16:17:30 (3123568): Guest Log: copied the webapp to /var/www
2025-06-04 16:17:31 (3123568): Guest Log: core_number=1
2025-06-04 16:17:31 (3123568): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-04 16:17:31 (3123568): Guest Log:  *** Starting ATLAS job. (PandaID=6679399374 taskID=45006595) ***
2025-06-04 17:55:55 (3123568): Status Report: Elapsed Time: '6000.000000'
2025-06-04 17:55:55 (3123568): Status Report: CPU Time: '5533.070000'
2025-06-04 19:34:56 (3123568): Status Report: Elapsed Time: '12000.000000'
2025-06-04 19:34:56 (3123568): Status Report: CPU Time: '11476.130000'
2025-06-04 21:13:57 (3123568): Status Report: Elapsed Time: '18000.000000'
2025-06-04 21:13:57 (3123568): Status Report: CPU Time: '17418.800000'
2025-06-04 22:52:57 (3123568): Status Report: Elapsed Time: '24000.000000'
2025-06-04 22:52:57 (3123568): Status Report: CPU Time: '23361.430000'
2025-06-05 00:31:58 (3123568): Status Report: Elapsed Time: '30000.000000'
2025-06-05 00:31:58 (3123568): Status Report: CPU Time: '29304.760000'
2025-06-05 02:10:58 (3123568): Status Report: Elapsed Time: '36000.000000'
2025-06-05 02:10:58 (3123568): Status Report: CPU Time: '35247.070000'
2025-06-05 03:49:59 (3123568): Status Report: Elapsed Time: '42000.000000'
2025-06-05 03:49:59 (3123568): Status Report: CPU Time: '41189.390000'
2025-06-05 05:28:00 (3123568): Guest Log:  *** Job finished ***
2025-06-05 05:28:00 (3123568): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-05 05:28:00 (3123568): Guest Log: 2025-06-05 03:27:46,295 | INFO     | end of generic workflow (traces error code: 0)
2025-06-05 05:28:00 (3123568): Guest Log: 2025-06-05 03:27:46,295 | INFO     | traces error code: 0
2025-06-05 05:28:00 (3123568): Guest Log: 2025-06-05 03:27:46,295 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-05 05:28:00 (3123568): Guest Log: 2025-06-05 03:27:59,952 | INFO     | PID=5750 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-06-05 05:28:00 (3123568): Guest Log: 2025-06-05 03:27:59,954 | INFO     | found 0 job(s) in 20 queues
2025-06-05 05:28:00 (3123568): Guest Log: 2025-06-05 03:27:59,954 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-06-05 05:28:00 (3123568): Guest Log: 2025-06-05 03:27:59,954 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-06-05 05:28:00 (3123568): Guest Log: 2025-06-05 03:27:59,955 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-05 05:28:00 (3123568): Guest Log: 2025-06-05 03:27:59,955 | CRITICAL | thread 'MainThread' is not alive
2025-06-05 05:28:00 (3123568): Guest Log: 2025-06-05 03:27:59,955 | INFO     | [monitor] control thread has ended
2025-06-05 05:28:00 (3123568): Guest Log: 2025-06-05 03:28:00,094 [wrapper] ==== pilot stdout END ====
2025-06-05 05:28:00 (3123568): Guest Log: 2025-06-05 03:28:00,099 [wrapper] ==== wrapper stdout RESUME ====
2025-06-05 05:28:00 (3123568): Guest Log: 2025-06-05 03:28:00,104 [wrapper] pilotpid: 5750
2025-06-05 05:28:00 (3123568): Guest Log: 2025-06-05 03:28:00,109 [wrapper] Pilot exit status: 0
2025-06-05 05:28:00 (3123568): Guest Log: 2025-06-05 03:28:00,136 [wrapper] pandaids: 6679399374
2025-06-05 05:28:00 (3123568): Guest Log: 2025-06-05 03:28:00,168 [wrapper] cleanup supervisor_pilot  3075 5751
2025-06-05 05:28:00 (3123568): Guest Log: 2025-06-05 03:28:00,174 [wrapper] Test setup, not cleaning
2025-06-05 05:28:00 (3123568): Guest Log: 2025-06-05 03:28:00,180 [wrapper] apfmon messages muted
2025-06-05 05:28:00 (3123568): Guest Log: 2025-06-05 03:28:00,185 [wrapper] ==== wrapper stdout END ====
2025-06-05 05:28:00 (3123568): Guest Log: 2025-06-05 03:28:00,190 [wrapper] ==== wrapper stderr END ====
2025-06-05 05:28:00 (3123568): Guest Log:  *** Error codes and diagnostics ***
2025-06-05 05:28:00 (3123568): Guest Log:     "exeErrorCode": 0,
2025-06-05 05:28:00 (3123568): Guest Log:     "exeErrorDiag": "",
2025-06-05 05:28:00 (3123568): Guest Log:     "pilotErrorCode": 0,
2025-06-05 05:28:00 (3123568): Guest Log:     "pilotErrorDiag": "",
2025-06-05 05:28:00 (3123568): Guest Log:  *** Listing of results directory ***
2025-06-05 05:28:00 (3123568): Guest Log: total 189744
2025-06-05 05:28:00 (3123568): Guest Log: -rw-r--r--. 1 atlas atlas    549845 Jun  2 09:40 pilot3.tar.gz
2025-06-05 05:28:00 (3123568): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  4 09:03 runpilot2-wrapper.sh
2025-06-05 05:28:00 (3123568): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  4 09:03 queuedata.json
2025-06-05 05:28:00 (3123568): Guest Log: -rw-r--r--. 1 atlas atlas      9761 Jun  4 14:17 init_data.xml
2025-06-05 05:28:00 (3123568): Guest Log: -rw-r--r--. 1 atlas atlas    564110 Jun  4 14:17 input.tar.gz
2025-06-05 05:28:00 (3123568): Guest Log: -rw-r--r--. 1 atlas atlas     15093 Jun  4 14:17 start_atlas.sh
2025-06-05 05:28:00 (3123568): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  4 14:17 EVNT.45006593._001418.pool.root.1 -> /data/./ATLAS.root_0
2025-06-05 05:28:00 (3123568): Guest Log: -rw-r--r--. 1 atlas atlas      2522 Jun  4 14:17 pandaJob.out
2025-06-05 05:28:00 (3123568): Guest Log: -rw-------. 1 atlas atlas    986819 Jun  4 14:17 agis_schedconf.cvmfs.json
2025-06-05 05:28:00 (3123568): Guest Log: drwx------. 6 atlas atlas      4096 Jun  4 14:17 pilot3
2025-06-05 05:28:00 (3123568): Guest Log: -rw-------. 1 atlas atlas 180970861 Jun  5 03:26 HITS.45006595._056255.pool.root.1
2025-06-05 05:28:00 (3123568): Guest Log: -rw-------. 1 atlas atlas      1027 Jun  5 03:27 memory_monitor_summary.json
2025-06-05 05:28:00 (3123568): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  5 03:27 agis_ddmendpoints.agis.ALL.json
2025-06-05 05:28:00 (3123568): Guest Log: -rw-------. 1 atlas atlas    578594 Jun  5 03:27 log.45006595._056255.job.log.tgz.1
2025-06-05 05:28:00 (3123568): Guest Log: -rw-------. 1 atlas atlas      7742 Jun  5 03:27 heartbeat.json
2025-06-05 05:28:00 (3123568): Guest Log: -rw-------. 1 atlas atlas        95 Jun  5 03:27 pilot_heartbeat.json
2025-06-05 05:28:00 (3123568): Guest Log: -rw-------. 1 atlas atlas       814 Jun  5 03:27 pilotlog.txt
2025-06-05 05:28:00 (3123568): Guest Log: -rw-------. 1 atlas atlas   4148643 Jun  5 03:28 log.45006595._056255.job.log.1
2025-06-05 05:28:00 (3123568): Guest Log: -rw-------. 1 atlas atlas       357 Jun  5 03:28 output.list
2025-06-05 05:28:00 (3123568): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  5 03:28 runtime_log
2025-06-05 05:28:00 (3123568): Guest Log: -rw-------. 1 atlas atlas   4751360 Jun  5 03:28 result.tar.gz
2025-06-05 05:28:00 (3123568): Guest Log: -rw-------. 1 atlas atlas       657 Jun  5 03:28 YFyLDmdCzg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmN0aKDmUf8fpn.diag
2025-06-05 05:28:00 (3123568): Guest Log: -rw-r--r--. 1 atlas atlas      8472 Jun  5 03:28 runtime_log.err
2025-06-05 05:28:00 (3123568): Guest Log: Looking for outputfile HITS.45006595._056255.pool.root.1
2025-06-05 05:28:00 (3123568): Guest Log: HITS file was successfully produced
2025-06-05 05:28:00 (3123568): Guest Log: -rw-------. 1 atlas atlas 180970861 Jun  5 03:26 /home/atlas/RunAtlas/HITS.45006595._056255.pool.root.1
2025-06-05 05:28:00 (3123568): Guest Log: Successfully finished the ATLAS job!
2025-06-05 05:28:00 (3123568): Guest Log: Copying the results back to the shared directory!
2025-06-05 05:28:01 (3123568): Guest Log:  *** Contents of shared directory: ***
2025-06-05 05:28:01 (3123568): Guest Log: total 216536
2025-06-05 05:28:01 (3123568): Guest Log: -rw-r--r--. 1 root root 216382184 Jun  4 14:16 ATLAS.root_0
2025-06-05 05:28:01 (3123568): Guest Log: -rw-r--r--. 1 root root      9761 Jun  4 14:16 init_data.xml
2025-06-05 05:28:01 (3123568): Guest Log: -rw-r--r--. 1 root root    564110 Jun  4 14:16 input.tar.gz
2025-06-05 05:28:01 (3123568): Guest Log: -rw-r--r--. 1 root root   4751360 Jun  5 03:28 result.tar.gz
2025-06-05 05:28:01 (3123568): Guest Log: -rw-r--r--. 1 root root     15093 Jun  4 14:16 start_atlas.sh
2025-06-05 05:28:01 (3123568): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-05 05:28:01 (3123568): VM Completion File Detected.
2025-06-05 05:28:01 (3123568): Powering off VM.
2025-06-05 05:28:02 (3123568): Successfully stopped VM.
2025-06-05 05:28:02 (3123568): Deregistering VM. (boinc_85ec36a19bed65ef, slot#25)
2025-06-05 05:28:02 (3123568): Removing network bandwidth throttle group from VM.
2025-06-05 05:28:02 (3123568): Removing VM from VirtualBox.
05:28:08 (3123568): called boinc_finish(0)

</stderr_txt>
]]>

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