Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
10:27:13 (4006713): wrapper (7.7.26015): starting
10:27:13 (4006713): wrapper: running run_atlas (--nthreads 4)
[2025-06-04 10:27:13] Arguments: --nthreads 4
[2025-06-04 10:27:13] Threads: 4
[2025-06-04 10:27:13] Checking for CVMFS
[2025-06-04 10:27:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 10:27:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 10:27:13] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 10:27:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 10:27:14] 2.12.6.0 2389267 2745 53088 146786 2 56 4079466 6144000 5626 130560 0 14282134 99.998 701641 5032 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://192.168.1.30:3128 1
[2025-06-04 10:27:14] CVMFS is ok
[2025-06-04 10:27:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 10:27:14] Checking for apptainer binary...
[2025-06-04 10:27:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 10:27:14] Running /usr/bin/apptainer --version
[2025-06-04 10:27:14] apptainer version 1.3.4
[2025-06-04 10:27:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 10:27:14] Starfish-Cruncher
[2025-06-04 10:27:14] apptainer works
[2025-06-04 10:27:14] Set ATHENA_PROC_NUMBER=4
[2025-06-04 10:27:14] Set ATHENA_CORE_NUMBER=4
[2025-06-04 10:27:14] Starting ATLAS job with PandaID=6678855457
[2025-06-04 10:27:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 12:19:36]  *** The last 200 lines of the pilot log: ***
[2025-06-04 12:19:36] 2025-06-04 17:19:18,996 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 12:19:36] 2025-06-04 17:19:18,996 | INFO     | log transfer has been attempted: DONE
[2025-06-04 12:19:36] 2025-06-04 17:19:18,997 | INFO     | job 6678855457 has finished - writing final server update
[2025-06-04 12:19:36] 2025-06-04 17:19:18,997 | INFO     | total number of processed events: 400 (read)
[2025-06-04 12:19:36] 2025-06-04 17:19:18,999 | INFO     | executing command: lscpu
[2025-06-04 12:19:36] 2025-06-04 17:19:19,030 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 12:19:36] 2025-06-04 17:19:21,076 | INFO     | monitor loop #501: job 0:6678855457 is in state 'finished'
[2025-06-04 12:19:36] 2025-06-04 17:19:21,076 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 12:19:36] 2025-06-04 17:19:21,936 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 12:19:36] 2025-06-04 17:19:21,936 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6678855457/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 12:19:36] 2025-06-04 17:19:21,937 | INFO     | extracted standard info from prmon json
[2025-06-04 12:19:36] 2025-06-04 17:19:21,937 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 12:19:36] 2025-06-04 17:19:21,937 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 12:19:36] 2025-06-04 17:19:21,937 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 12:19:36] 2025-06-04 17:19:21,937 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 12:19:36] 2025-06-04 17:19:21,939 | INFO     | fitting pss+swap vs Time
[2025-06-04 12:19:36] 2025-06-04 17:19:21,939 | INFO     | sum of square deviations: 412686807.5
[2025-06-04 12:19:36] 2025-06-04 17:19:21,939 | INFO     | sum of deviations: 1149921979.9999955
[2025-06-04 12:19:36] 2025-06-04 17:19:21,940 | INFO     | mean x: 1749054191.5
[2025-06-04 12:19:36] 2025-06-04 17:19:21,940 | INFO     | mean y: 2337878.290909091
[2025-06-04 12:19:36] 2025-06-04 17:19:21,940 | INFO     | -- intersect: -4871275289.042944
[2025-06-04 12:19:36] 2025-06-04 17:19:21,940 | INFO     | intersect: -4871275289.042944
[2025-06-04 12:19:36] 2025-06-04 17:19:21,940 | INFO     | chi2: 1.5001594103112634
[2025-06-04 12:19:36] 2025-06-04 17:19:21,940 | INFO     | sum of square deviations: 358927660.0
[2025-06-04 12:19:36] 2025-06-04 17:19:21,941 | INFO     | sum of deviations: 1396775132.9999986
[2025-06-04 12:19:36] 2025-06-04 17:19:21,941 | INFO     | mean x: 1749054039.0
[2025-06-04 12:19:36] 2025-06-04 17:19:21,941 | INFO     | mean y: 2338578.961904762
[2025-06-04 12:19:36] 2025-06-04 17:19:21,941 | INFO     | -- intersect: -6804144900.044449
[2025-06-04 12:19:36] 2025-06-04 17:19:21,941 | INFO     | intersect: -6804144900.044449
[2025-06-04 12:19:36] 2025-06-04 17:19:21,941 | INFO     | chi2: 1.5023340407697963
[2025-06-04 12:19:36] 2025-06-04 17:19:21,941 | INFO     | current chi2=1.5023340407697963 (change=-0.14495995849411938 %)
[2025-06-04 12:19:36] 2025-06-04 17:19:21,941 | INFO     | right removable region: 104
[2025-06-04 12:19:36] 2025-06-04 17:19:21,941 | INFO     | sum of square deviations: 358927660.0
[2025-06-04 12:19:36] 2025-06-04 17:19:21,942 | INFO     | sum of deviations: -12989913521.999998
[2025-06-04 12:19:36] 2025-06-04 17:19:21,942 | INFO     | mean x: 1749054344.0
[2025-06-04 12:19:36] 2025-06-04 17:19:21,942 | INFO     | mean y: 2376994.838095238
[2025-06-04 12:19:36] 2025-06-04 17:19:21,942 | INFO     | -- intersect: 63302220405.731636
[2025-06-04 12:19:36] 2025-06-04 17:19:21,942 | INFO     | intersect: 63302220405.731636
[2025-06-04 12:19:36] 2025-06-04 17:19:21,942 | INFO     | chi2: 0.040285810288914536
[2025-06-04 12:19:36] 2025-06-04 17:19:21,942 | INFO     | current chi2=0.040285810288914536 (change=97.31456470478989 %)
[2025-06-04 12:19:36] 2025-06-04 17:19:21,942 | INFO     | sum of square deviations: 310052325.0
[2025-06-04 12:19:36] 2025-06-04 17:19:21,943 | INFO     | sum of deviations: -11323832721.999998
[2025-06-04 12:19:36] 2025-06-04 17:19:21,943 | INFO     | mean x: 1749054496.5
[2025-06-04 12:19:36] 2025-06-04 17:19:21,943 | INFO     | mean y: 2371782.18
[2025-06-04 12:19:36] 2025-06-04 17:19:21,943 | INFO     | -- intersect: 63881913856.337746
[2025-06-04 12:19:36] 2025-06-04 17:19:21,943 | INFO     | intersect: 63881913856.337746
[2025-06-04 12:19:36] 2025-06-04 17:19:21,943 | INFO     | chi2: 0.04015977604080078
[2025-06-04 12:19:36] 2025-06-04 17:19:21,943 | INFO     | current chi2=0.04015977604080078 (change=0.31285022495485637 %)
[2025-06-04 12:19:36] 2025-06-04 17:19:21,943 | INFO     | left removable region: 20
[2025-06-04 12:19:36] 2025-06-04 17:19:21,943 | INFO     | sum of square deviations: 183761585.0
[2025-06-04 12:19:36] 2025-06-04 17:19:21,944 | INFO     | sum of deviations: -6852240318.5
[2025-06-04 12:19:36] 2025-06-04 17:19:21,944 | INFO     | mean x: 1749054618.5
[2025-06-04 12:19:36] 2025-06-04 17:19:21,944 | INFO     | mean y: 2359996.464285714
[2025-06-04 12:19:36] 2025-06-04 17:19:21,944 | INFO     | -- intersect: 65222425311.77128
[2025-06-04 12:19:36] 2025-06-04 17:19:21,944 | INFO     | intersect: 65222425311.77128
[2025-06-04 12:19:36] 2025-06-04 17:19:21,944 | INFO     | chi2: 0.03449742439373897
[2025-06-04 12:19:36] 2025-06-04 17:19:21,944 | INFO     | -- intersect: 65222425311.77128
[2025-06-04 12:19:36] 2025-06-04 17:19:21,944 | INFO     | current memory leak: -37.29 B/s (using 84 data points, chi2=0.03)
[2025-06-04 12:19:36] 2025-06-04 17:19:21,944 | INFO     | ..............................
[2025-06-04 12:19:36] 2025-06-04 17:19:21,944 | INFO     | . Timing measurements:
[2025-06-04 12:19:36] 2025-06-04 17:19:21,944 | INFO     | . get job = 0 s
[2025-06-04 12:19:36] 2025-06-04 17:19:21,945 | INFO     | . initial setup = 3 s
[2025-06-04 12:19:36] 2025-06-04 17:19:21,945 | INFO     | . payload setup = 5 s
[2025-06-04 12:19:36] 2025-06-04 17:19:21,945 | INFO     | . stage-in = 0 s
[2025-06-04 12:19:36] 2025-06-04 17:19:21,945 | INFO     | . payload execution = 6692 s
[2025-06-04 12:19:36] 2025-06-04 17:19:21,945 | INFO     | . stage-out = 0 s
[2025-06-04 12:19:36] 2025-06-04 17:19:21,945 | INFO     | . log creation = 0 s
[2025-06-04 12:19:36] 2025-06-04 17:19:21,945 | INFO     | ..............................
[2025-06-04 12:19:36] 2025-06-04 17:19:22,017 | INFO     | 
[2025-06-04 12:19:36] 2025-06-04 17:19:22,017 | INFO     | job summary report
[2025-06-04 12:19:36] 2025-06-04 17:19:22,017 | INFO     | --------------------------------------------------
[2025-06-04 12:19:36] 2025-06-04 17:19:22,018 | INFO     | PanDA job id: 6678855457
[2025-06-04 12:19:36] 2025-06-04 17:19:22,018 | INFO     | task id: 45006595
[2025-06-04 12:19:36] 2025-06-04 17:19:22,018 | INFO     | errors: (none)
[2025-06-04 12:19:36] 2025-06-04 17:19:22,018 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 12:19:36] 2025-06-04 17:19:22,018 | INFO     | pilot state: finished 
[2025-06-04 12:19:36] 2025-06-04 17:19:22,018 | INFO     | transexitcode: 0
[2025-06-04 12:19:36] 2025-06-04 17:19:22,018 | INFO     | exeerrorcode: 0
[2025-06-04 12:19:36] 2025-06-04 17:19:22,018 | INFO     | exeerrordiag: 
[2025-06-04 12:19:36] 2025-06-04 17:19:22,018 | INFO     | exitcode: 0
[2025-06-04 12:19:36] 2025-06-04 17:19:22,018 | INFO     | exitmsg: OK
[2025-06-04 12:19:36] 2025-06-04 17:19:22,018 | INFO     | cpuconsumptiontime: 25567 s
[2025-06-04 12:19:36] 2025-06-04 17:19:22,018 | INFO     | nevents: 400
[2025-06-04 12:19:36] 2025-06-04 17:19:22,018 | INFO     | neventsw: 0
[2025-06-04 12:19:36] 2025-06-04 17:19:22,018 | INFO     | pid: 4019532
[2025-06-04 12:19:36] 2025-06-04 17:19:22,018 | INFO     | pgrp: 4019532
[2025-06-04 12:19:36] 2025-06-04 17:19:22,018 | INFO     | corecount: 4
[2025-06-04 12:19:36] 2025-06-04 17:19:22,018 | INFO     | event service: False
[2025-06-04 12:19:36] 2025-06-04 17:19:22,018 | INFO     | sizes: {0: 2397297, 3: 2397503, 11: 2397531, 6701: 2433555, 6702: 2433555, 6705: 2433725}
[2025-06-04 12:19:36] 2025-06-04 17:19:22,018 | INFO     | --------------------------------------------------
[2025-06-04 12:19:36] 2025-06-04 17:19:22,018 | INFO     | 
[2025-06-04 12:19:36] 2025-06-04 17:19:22,019 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-06-04 12:19:36] 2025-06-04 17:19:22,035 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 12:19:36] 2025-06-04 17:19:22,036 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 12:19:36] 2025-06-04 17:19:22,036 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 12:19:36] 2025-06-04 17:19:22,036 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 12:19:36] 2025-06-04 17:19:22,036 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 12:19:36] 2025-06-04 17:19:22,036 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 12:19:36] 2025-06-04 17:19:22,036 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 12:19:36] 2025-06-04 17:19:22,036 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 12:19:36] 2025-06-04 17:19:22,036 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 12:19:36] 2025-06-04 17:19:22,036 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 12:19:36] 2025-06-04 17:19:22,036 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 12:19:36] 2025-06-04 17:19:22,036 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 12:19:36] 2025-06-04 17:19:22,036 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 12:19:36] 2025-06-04 17:19:22,036 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 12:19:36] 2025-06-04 17:19:22,036 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 12:19:36] 2025-06-04 17:19:22,036 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 12:19:36] 2025-06-04 17:19:22,036 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 12:19:36] 2025-06-04 17:19:22,036 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 12:19:36] 2025-06-04 17:19:22,037 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 12:19:36] 2025-06-04 17:19:22,037 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 12:19:36] 2025-06-04 17:19:22,037 | INFO     | job 6678855457 has completed (purged errors)
[2025-06-04 12:19:36] 2025-06-04 17:19:22,037 | INFO     | overall cleanup function is called
[2025-06-04 12:19:36] 2025-06-04 17:19:23,044 | INFO     | --- collectZombieJob: --- 10, [4019532]
[2025-06-04 12:19:36] 2025-06-04 17:19:23,044 | INFO     | zombie collector waiting for pid 4019532
[2025-06-04 12:19:36] 2025-06-04 17:19:23,044 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 12:19:36] 2025-06-04 17:19:23,044 | INFO     | collected zombie processes
[2025-06-04 12:19:36] 2025-06-04 17:19:23,044 | INFO     | will attempt to kill all subprocesses of pid=4019532
[2025-06-04 12:19:36] 2025-06-04 17:19:23,197 | INFO     | process IDs to be killed: [4019532] (in reverse order)
[2025-06-04 12:19:36] 2025-06-04 17:19:23,250 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 12:19:36] 2025-06-04 17:19:23,251 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 12:19:36] 2025-06-04 17:19:23,255 | INFO     | did not find any defunct processes belonging to 4019532
[2025-06-04 12:19:36] 2025-06-04 17:19:23,259 | INFO     | did not find any defunct processes belonging to 4019532
[2025-06-04 12:19:36] 2025-06-04 17:19:23,259 | INFO     | ready for new job
[2025-06-04 12:19:36] 2025-06-04 17:19:23,259 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 12:19:36] 2025-06-04 17:19:23,260 | INFO     | **************************************
[2025-06-04 12:19:36] 2025-06-04 17:19:23,260 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 12:19:36] 2025-06-04 17:19:23,260 | INFO     | **************************************
[2025-06-04 12:19:36] 2025-06-04 17:19:23,260 | INFO     | 
[2025-06-04 12:19:36] 2025-06-04 17:19:23,262 | INFO     | architecture information:
[2025-06-04 12:19:36] 2025-06-04 17:19:23,262 | INFO     | executing command: cat /etc/os-release
[2025-06-04 12:19:36] 2025-06-04 17:19:23,273 | INFO     | cat /etc/os-release:
[2025-06-04 12:19:36] NAME="CentOS Linux"
[2025-06-04 12:19:36] VERSION="7 (Core)"
[2025-06-04 12:19:36] ID="centos"
[2025-06-04 12:19:36] ID_LIKE="rhel fedora"
[2025-06-04 12:19:36] VERSION_ID="7"
[2025-06-04 12:19:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 12:19:36] ANSI_COLOR="0;31"
[2025-06-04 12:19:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 12:19:36] HOME_URL="https://www.centos.org/"
[2025-06-04 12:19:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 12:19:36] 
[2025-06-04 12:19:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 12:19:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 12:19:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 12:19:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 12:19:36] 
[2025-06-04 12:19:36] 2025-06-04 17:19:23,274 | INFO     | **************************************
[2025-06-04 12:19:36] 2025-06-04 17:19:23,777 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-06-04 12:19:36] 2025-06-04 17:19:23,789 | INFO     | sufficient remaining disk space (1816538382336 B)
[2025-06-04 12:19:36] 2025-06-04 17:19:23,790 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 12:19:36] 2025-06-04 17:19:23,790 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 12:19:36] 2025-06-04 17:19:23,790 | INFO     | update_server=False
[2025-06-04 12:19:36] 2025-06-04 17:19:23,790 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 12:19:36] 2025-06-04 17:19:23,790 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 12:19:36] 2025-06-04 17:19:23,863 | INFO     | all payload control threads have been joined
[2025-06-04 12:19:36] 2025-06-04 17:19:23,915 | INFO     | all data control threads have been joined
[2025-06-04 12:19:36] 2025-06-04 17:19:24,351 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 12:19:36] 2025-06-04 17:19:24,353 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 12:19:36] 2025-06-04 17:19:24,353 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 12:19:36] 2025-06-04 17:19:24,354 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 12:19:36] 2025-06-04 17:19:24,584 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 12:19:36] 2025-06-04 17:19:24,584 | INFO     | aborting loop
[2025-06-04 12:19:36] 2025-06-04 17:19:24,795 | INFO     | [job] retrieve thread has finished
[2025-06-04 12:19:36] 2025-06-04 17:19:24,796 | INFO     | [job] queue monitor thread has finished
[2025-06-04 12:19:36] 2025-06-04 17:19:24,868 | INFO     | [payload] control thread has finished
[2025-06-04 12:19:36] 2025-06-04 17:19:24,915 | INFO     | [data] control thread has finished
[2025-06-04 12:19:36] 2025-06-04 17:19:25,001 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 12:19:36] 2025-06-04 17:19:25,226 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 12:19:36] 2025-06-04 17:19:25,444 | INFO     | all job control threads have been joined
[2025-06-04 12:19:36] 2025-06-04 17:19:25,590 | INFO     | [job] job monitor thread has finished
[2025-06-04 12:19:36] 2025-06-04 17:19:25,624 | INFO     | [data] copytool_in thread has finished
[2025-06-04 12:19:36] 2025-06-04 17:19:25,704 | INFO     | [payload] validate_post thread has finished
[2025-06-04 12:19:36] 2025-06-04 17:19:25,764 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 12:19:36] 2025-06-04 17:19:25,906 | INFO     | [job] validate thread has finished
[2025-06-04 12:19:36] 2025-06-04 17:19:25,983 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 12:19:36] 2025-06-04 17:19:26,124 | INFO     | [payload] failed_post thread has finished
[2025-06-04 12:19:36] 2025-06-04 17:19:26,167 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 12:19:36] 2025-06-04 17:19:26,356 | INFO     | [data] copytool_out thread has finished
[2025-06-04 12:19:36] 2025-06-04 17:19:26,450 | INFO     | [job] control thread has finished
[2025-06-04 12:19:36] 2025-06-04 17:19:29,006 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 12:19:36] 2025-06-04 17:19:30,882 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 128048673490752)>', '<ExcThread(monitor, started 128048288499456)>']
[2025-06-04 12:19:36] 2025-06-04 17:19:31,384 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 12:19:36] 2025-06-04 17:19:31,384 | INFO     | [monitor] control thread has ended
[2025-06-04 12:19:36] 2025-06-04 17:19:35,908 | INFO     | all workflow threads have been joined
[2025-06-04 12:19:36] 2025-06-04 17:19:35,908 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 12:19:36] 2025-06-04 17:19:35,908 | INFO     | traces error code: 0
[2025-06-04 12:19:36] 2025-06-04 17:19:35,908 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 12:19:36] 2025-06-04 17:19:35,983 [wrapper] ==== pilot stdout END ====
[2025-06-04 12:19:36] 2025-06-04 17:19:35,985 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 12:19:36] 2025-06-04 17:19:35,987 [wrapper] pilotpid: 4010539
[2025-06-04 12:19:36] 2025-06-04 17:19:35,989 [wrapper] Pilot exit status: 0
[2025-06-04 12:19:36] 2025-06-04 17:19:35,997 [wrapper] pandaids: 6678855457
[2025-06-04 12:19:36] 2025-06-04 17:19:36,032 [wrapper] cleanup supervisor_pilot    8874 4010540
[2025-06-04 12:19:36] 2025-06-04 17:19:36,035 [wrapper] Test setup, not cleaning
[2025-06-04 12:19:36] 2025-06-04 17:19:36,037 [wrapper] apfmon messages muted
[2025-06-04 12:19:36] 2025-06-04 17:19:36,039 [wrapper] ==== wrapper stdout END ====
[2025-06-04 12:19:36] 2025-06-04 17:19:36,040 [wrapper] ==== wrapper stderr END ====
[2025-06-04 12:19:36]  *** Error codes and diagnostics ***
[2025-06-04 12:19:36]     "exeErrorCode": 0,
[2025-06-04 12:19:36]     "exeErrorDiag": "",
[2025-06-04 12:19:36]     "pilotErrorCode": 0,
[2025-06-04 12:19:36]     "pilotErrorDiag": "",
[2025-06-04 12:19:36]  *** Listing of results directory ***
[2025-06-04 12:19:36] total 391864
[2025-06-04 12:19:36] -rw-r--r-- 1 boinc boinc    495897 Jun  4 03:17 pilot3.tar.gz
[2025-06-04 12:19:36] -rwx------ 1 boinc boinc     37140 Jun  4 03:26 runpilot2-wrapper.sh
[2025-06-04 12:19:36] -rw-r--r-- 1 boinc boinc      5111 Jun  4 03:26 queuedata.json
[2025-06-04 12:19:36] -rw-r--r-- 1 boinc boinc       100 Jun  4 10:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 12:19:36] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 10:27 run_atlas
[2025-06-04 12:19:36] -rw-r--r-- 1 boinc boinc       105 Jun  4 10:27 job.xml
[2025-06-04 12:19:36] -rw-r--r-- 1 boinc boinc      9628 Jun  4 10:27 init_data.xml
[2025-06-04 12:19:36] -rw-r--r-- 2 boinc boinc 212761272 Jun  4 10:27 EVNT.45006593._000827.pool.root.1
[2025-06-04 12:19:36] -rw-r--r-- 2 boinc boinc     15093 Jun  4 10:27 start_atlas.sh
[2025-06-04 12:19:36] drwxrwx--x 2 boinc boinc      4096 Jun  4 10:27 shared
[2025-06-04 12:19:36] -rw-r--r-- 2 boinc boinc    508879 Jun  4 10:27 input.tar.gz
[2025-06-04 12:19:36] -rw-r--r-- 1 boinc boinc         0 Jun  4 10:27 boinc_lockfile
[2025-06-04 12:19:36] -rw-r--r-- 1 boinc boinc      2524 Jun  4 10:27 pandaJob.out
[2025-06-04 12:19:36] -rw------- 1 boinc boinc    990989 Jun  4 10:27 agis_schedconf.cvmfs.json
[2025-06-04 12:19:36] -rw------- 1 boinc boinc   1598969 Jun  4 10:27 agis_ddmendpoints.agis.ALL.json
[2025-06-04 12:19:36] drwx------ 4 boinc boinc      4096 Jun  4 10:27 pilot3
[2025-06-04 12:19:36] -rw------- 1 boinc boinc 182864905 Jun  4 12:18 HITS.45006595._055648.pool.root.1
[2025-06-04 12:19:36] -rw------- 1 boinc boinc        95 Jun  4 12:19 pilot_heartbeat.json
[2025-06-04 12:19:36] -rw------- 1 boinc boinc      1036 Jun  4 12:19 memory_monitor_summary.json
[2025-06-04 12:19:36] -rw------- 1 boinc boinc    253444 Jun  4 12:19 log.45006595._055648.job.log.tgz.1
[2025-06-04 12:19:36] -rw-r--r-- 1 boinc boinc       529 Jun  4 12:19 boinc_task_state.xml
[2025-06-04 12:19:36] -rw------- 1 boinc boinc      7671 Jun  4 12:19 heartbeat.json
[2025-06-04 12:19:36] -rw-r--r-- 1 boinc boinc      8192 Jun  4 12:19 boinc_mmap_file
[2025-06-04 12:19:36] -rw-r--r-- 1 boinc boinc        27 Jun  4 12:19 wrapper_checkpoint.txt
[2025-06-04 12:19:36] -rw------- 1 boinc boinc      4362 Jun  4 12:19 pilotlog.txt
[2025-06-04 12:19:36] -rw------- 1 boinc boinc    650892 Jun  4 12:19 log.45006595._055648.job.log.1
[2025-06-04 12:19:36] -rw------- 1 boinc boinc       357 Jun  4 12:19 output.list
[2025-06-04 12:19:36] -rw-r--r-- 1 boinc boinc       620 Jun  4 12:19 runtime_log
[2025-06-04 12:19:36] -rw------- 1 boinc boinc    921600 Jun  4 12:19 result.tar.gz
[2025-06-04 12:19:36] -rw------- 1 boinc boinc       653 Jun  4 12:19 XX3LDmWdyg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmNmnKDmHcZA0n.diag
[2025-06-04 12:19:36] -rw-r--r-- 1 boinc boinc      8761 Jun  4 12:19 runtime_log.err
[2025-06-04 12:19:36] -rw-r--r-- 1 boinc boinc     20781 Jun  4 12:19 stderr.txt
[2025-06-04 12:19:36] HITS file was successfully produced:
[2025-06-04 12:19:36] -rw------- 1 boinc boinc 182864905 Jun  4 12:18 shared/HITS.pool.root.1
[2025-06-04 12:19:36]  *** Contents of shared directory: ***
[2025-06-04 12:19:36] total 387780
[2025-06-04 12:19:36] -rw-r--r-- 2 boinc boinc 212761272 Jun  4 10:27 ATLAS.root_0
[2025-06-04 12:19:36] -rw-r--r-- 2 boinc boinc     15093 Jun  4 10:27 start_atlas.sh
[2025-06-04 12:19:36] -rw-r--r-- 2 boinc boinc    508879 Jun  4 10:27 input.tar.gz
[2025-06-04 12:19:36] -rw------- 1 boinc boinc 182864905 Jun  4 12:18 HITS.pool.root.1
[2025-06-04 12:19:36] -rw------- 1 boinc boinc    921600 Jun  4 12:19 result.tar.gz
12:19:37 (4006713): run_atlas exited; CPU time 25658.164111
12:19:37 (4006713): called boinc_finish(0)

</stderr_txt>
]]>

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