Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:41:58 (4156672): wrapper (7.7.26015): starting
00:41:58 (4156672): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 00:41:58] Arguments: --nthreads 12
[2025-06-05 00:41:58] Threads: 12
[2025-06-05 00:41:58] Checking for CVMFS
[2025-06-05 00:41:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 00:41:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 00:41:59] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 00:42:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 00:42:00] 2.12.7.0 8883 8372 177016 146797 3 419 34352670 46080001 35211 130560 0 57469476 99.931 12039138 22396 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-06-05 00:42:00] CVMFS is ok
[2025-06-05 00:42:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 00:42:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 00:42:00] Further information can be found at the LHC@home message board.
[2025-06-05 00:42:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 00:42:00] Checking for apptainer binary...
[2025-06-05 00:42:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 00:42:00] Running /usr/bin/apptainer --version
[2025-06-05 00:42:00] apptainer version 1.4.1-1.el9
[2025-06-05 00:42:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 00:42:01] mff2102.farm.particle.cz
[2025-06-05 00:42:01] apptainer works
[2025-06-05 00:42:01] Set ATHENA_PROC_NUMBER=12
[2025-06-05 00:42:01] Set ATHENA_CORE_NUMBER=12
[2025-06-05 00:42:01] Starting ATLAS job with PandaID=6679017608
[2025-06-05 00:42:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 02:10:59]  *** The last 200 lines of the pilot log: ***
[2025-06-05 02:10:59] 2025-06-05 00:09:29,593 | INFO     | monitor loop #359: job 0:6679017608 is in state 'finished'
[2025-06-05 02:10:59] 2025-06-05 00:09:29,593 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:10:59] 2025-06-05 00:09:29,920 | INFO     | job 6679017608 has state=finished
[2025-06-05 02:10:59] 2025-06-05 00:09:29,920 | INFO     | preparing for final server update for job 6679017608 in state='finished'
[2025-06-05 02:10:59] 2025-06-05 00:09:29,920 | INFO     | this job has now completed (state=finished)
[2025-06-05 02:10:59] 2025-06-05 00:09:29,921 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 02:10:59] 2025-06-05 00:09:29,921 | INFO     | log transfer has been attempted: DONE
[2025-06-05 02:10:59] 2025-06-05 00:09:29,921 | INFO     | job 6679017608 has finished - writing final server update
[2025-06-05 02:10:59] 2025-06-05 00:09:29,921 | INFO     | total number of processed events: 400 (read)
[2025-06-05 02:10:59] 2025-06-05 00:09:29,937 | INFO     | executing command: lscpu
[2025-06-05 02:10:59] 2025-06-05 00:09:30,091 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 02:10:59] 2025-06-05 00:09:32,098 | INFO     | monitor loop #360: job 0:6679017608 is in state 'finished'
[2025-06-05 02:10:59] 2025-06-05 00:09:32,098 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:10:59] 2025-06-05 00:09:33,628 | INFO     | PID=4178770 has CPU usage=15.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-05 02:10:59] 2025-06-05 00:09:33,628 | INFO     | .. there are 92 such processes running
[2025-06-05 02:10:59] 2025-06-05 00:09:34,606 | INFO     | monitor loop #361: job 0:6679017608 is in state 'finished'
[2025-06-05 02:10:59] 2025-06-05 00:09:34,609 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:10:59] 2025-06-05 00:09:37,114 | INFO     | monitor loop #362: job 0:6679017608 is in state 'finished'
[2025-06-05 02:10:59] 2025-06-05 00:09:37,114 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:10:59] 2025-06-05 00:09:39,619 | INFO     | monitor loop #363: job 0:6679017608 is in state 'finished'
[2025-06-05 02:10:59] 2025-06-05 00:09:39,619 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:10:59] 2025-06-05 00:09:42,125 | INFO     | monitor loop #364: job 0:6679017608 is in state 'finished'
[2025-06-05 02:10:59] 2025-06-05 00:09:42,125 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:10:59] 2025-06-05 00:09:44,630 | INFO     | monitor loop #365: job 0:6679017608 is in state 'finished'
[2025-06-05 02:10:59] 2025-06-05 00:09:44,630 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:10:59] 2025-06-05 00:09:47,135 | INFO     | monitor loop #366: job 0:6679017608 is in state 'finished'
[2025-06-05 02:10:59] 2025-06-05 00:09:47,135 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:10:59] 2025-06-05 00:09:49,640 | INFO     | monitor loop #367: job 0:6679017608 is in state 'finished'
[2025-06-05 02:10:59] 2025-06-05 00:09:49,640 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:10:59] 2025-06-05 00:09:52,145 | INFO     | monitor loop #368: job 0:6679017608 is in state 'finished'
[2025-06-05 02:10:59] 2025-06-05 00:09:52,145 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:10:59] 2025-06-05 00:09:54,654 | INFO     | monitor loop #369: job 0:6679017608 is in state 'finished'
[2025-06-05 02:10:59] 2025-06-05 00:09:54,654 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:10:59] 2025-06-05 00:09:56,679 | INFO     | PID=4178770 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-05 02:10:59] 2025-06-05 00:09:56,680 | INFO     | .. there are 92 such processes running
[2025-06-05 02:10:59] 2025-06-05 00:09:57,163 | INFO     | monitor loop #370: job 0:6679017608 is in state 'finished'
[2025-06-05 02:10:59] 2025-06-05 00:09:57,163 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:10:59] 2025-06-05 00:09:59,666 | INFO     | monitor loop #371: job 0:6679017608 is in state 'finished'
[2025-06-05 02:10:59] 2025-06-05 00:09:59,666 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:10:59] 2025-06-05 00:10:02,170 | INFO     | monitor loop #372: job 0:6679017608 is in state 'finished'
[2025-06-05 02:10:59] 2025-06-05 00:10:02,170 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:10:59] 2025-06-05 00:10:03,339 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 02:10:59] 2025-06-05 00:10:03,339 | INFO     | using path: /scratch/.boinc/slots/5/PanDA_Pilot-6679017608/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 02:10:59] 2025-06-05 00:10:03,340 | INFO     | extracted standard info from prmon json
[2025-06-05 02:10:59] 2025-06-05 00:10:03,340 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 02:10:59] 2025-06-05 00:10:03,340 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 02:10:59] 2025-06-05 00:10:03,340 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 02:10:59] 2025-06-05 00:10:03,340 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 02:10:59] 2025-06-05 00:10:03,342 | INFO     | fitting pss+swap vs Time
[2025-06-05 02:10:59] 2025-06-05 00:10:03,347 | INFO     | sum of square deviations: 136095575.0
[2025-06-05 02:10:59] 2025-06-05 00:10:03,347 | INFO     | sum of deviations: 3036261366.5
[2025-06-05 02:10:59] 2025-06-05 00:10:03,347 | INFO     | mean x: 1749079746.5
[2025-06-05 02:10:59] 2025-06-05 00:10:03,347 | INFO     | mean y: 2661139.3552631577
[2025-06-05 02:10:59] 2025-06-05 00:10:03,348 | INFO     | -- intersect: -39018910731.9239
[2025-06-05 02:10:59] 2025-06-05 00:10:03,348 | INFO     | intersect: -39018910731.9239
[2025-06-05 02:10:59] 2025-06-05 00:10:03,348 | INFO     | chi2: 0.14837486434574618
[2025-06-05 02:10:59] 2025-06-05 00:10:03,348 | INFO     | -- intersect: -39018910731.9239
[2025-06-05 02:10:59] 2025-06-05 00:10:03,348 | INFO     | current memory leak: 22.31 B/s (using 76 data points, chi2=0.15)
[2025-06-05 02:10:59] 2025-06-05 00:10:03,349 | INFO     | ..............................
[2025-06-05 02:10:59] 2025-06-05 00:10:03,349 | INFO     | . Timing measurements:
[2025-06-05 02:10:59] 2025-06-05 00:10:03,349 | INFO     | . get job = 0 s
[2025-06-05 02:10:59] 2025-06-05 00:10:03,349 | INFO     | . initial setup = 4 s
[2025-06-05 02:10:59] 2025-06-05 00:10:03,349 | INFO     | . payload setup = 53 s
[2025-06-05 02:10:59] 2025-06-05 00:10:03,349 | INFO     | . stage-in = 0 s
[2025-06-05 02:10:59] 2025-06-05 00:10:03,349 | INFO     | . payload execution = 5044 s
[2025-06-05 02:10:59] 2025-06-05 00:10:03,349 | INFO     | . stage-out = 1 s
[2025-06-05 02:10:59] 2025-06-05 00:10:03,349 | INFO     | . log creation = 0 s
[2025-06-05 02:10:59] 2025-06-05 00:10:03,349 | INFO     | ..............................
[2025-06-05 02:10:59] 2025-06-05 00:10:03,462 | INFO     | 
[2025-06-05 02:10:59] 2025-06-05 00:10:03,462 | INFO     | job summary report
[2025-06-05 02:10:59] 2025-06-05 00:10:03,462 | INFO     | --------------------------------------------------
[2025-06-05 02:10:59] 2025-06-05 00:10:03,462 | INFO     | PanDA job id: 6679017608
[2025-06-05 02:10:59] 2025-06-05 00:10:03,462 | INFO     | task id: 45006595
[2025-06-05 02:10:59] 2025-06-05 00:10:03,462 | INFO     | errors: (none)
[2025-06-05 02:10:59] 2025-06-05 00:10:03,462 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 02:10:59] 2025-06-05 00:10:03,462 | INFO     | pilot state: finished 
[2025-06-05 02:10:59] 2025-06-05 00:10:03,462 | INFO     | transexitcode: 0
[2025-06-05 02:10:59] 2025-06-05 00:10:03,463 | INFO     | exeerrorcode: 0
[2025-06-05 02:10:59] 2025-06-05 00:10:03,463 | INFO     | exeerrordiag: 
[2025-06-05 02:10:59] 2025-06-05 00:10:03,463 | INFO     | exitcode: 0
[2025-06-05 02:10:59] 2025-06-05 00:10:03,463 | INFO     | exitmsg: OK
[2025-06-05 02:10:59] 2025-06-05 00:10:03,463 | INFO     | cpuconsumptiontime: 33168 s
[2025-06-05 02:10:59] 2025-06-05 00:10:03,463 | INFO     | nevents: 400
[2025-06-05 02:10:59] 2025-06-05 00:10:03,463 | INFO     | neventsw: 0
[2025-06-05 02:10:59] 2025-06-05 00:10:03,463 | INFO     | pid: 29760
[2025-06-05 02:10:59] 2025-06-05 00:10:03,463 | INFO     | pgrp: 29760
[2025-06-05 02:10:59] 2025-06-05 00:10:03,463 | INFO     | corecount: 12
[2025-06-05 02:10:59] 2025-06-05 00:10:03,463 | INFO     | event service: False
[2025-06-05 02:10:59] 2025-06-05 00:10:03,463 | INFO     | sizes: {0: 2397121, 1: 2397320, 12: 2397320, 23: 2397348, 33: 2397376, 36: 2397638, 44: 2397794, 5101: 2424159, 5102: 2433102, 5104: 2433158, 5140: 2433328}
[2025-06-05 02:10:59] 2025-06-05 00:10:03,463 | INFO     | --------------------------------------------------
[2025-06-05 02:10:59] 2025-06-05 00:10:03,463 | INFO     | 
[2025-06-05 02:10:59] 2025-06-05 00:10:03,464 | INFO     | executing command: ls -lF /scratch/.boinc/slots/5
[2025-06-05 02:10:59] 2025-06-05 00:10:03,622 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:10:03,622 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:10:03,622 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:10:03,622 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:10:03,622 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:10:03,623 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:10:03,623 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:10:03,623 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:10:03,623 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:10:03,623 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:10:03,623 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:10:03,623 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:10:03,623 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:10:03,623 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:10:03,623 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:10:03,623 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:10:03,623 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:10:03,623 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 02:10:59] 2025-06-05 00:10:03,624 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:10:03,624 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:10:03,624 | INFO     | job 6679017608 has completed (purged errors)
[2025-06-05 02:10:59] 2025-06-05 00:10:03,624 | INFO     | overall cleanup function is called
[2025-06-05 02:10:59] 2025-06-05 00:10:04,635 | INFO     | --- collectZombieJob: --- 10, [29760]
[2025-06-05 02:10:59] 2025-06-05 00:10:04,637 | INFO     | zombie collector waiting for pid 29760
[2025-06-05 02:10:59] 2025-06-05 00:10:04,637 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 02:10:59] 2025-06-05 00:10:04,637 | INFO     | collected zombie processes
[2025-06-05 02:10:59] 2025-06-05 00:10:04,637 | INFO     | will attempt to kill all subprocesses of pid=29760
[2025-06-05 02:10:59] 2025-06-05 00:10:05,518 | INFO     | process IDs to be killed: [29760] (in reverse order)
[2025-06-05 02:10:59] 2025-06-05 00:10:05,848 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 02:10:59] 2025-06-05 00:10:05,849 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 02:10:59] 2025-06-05 00:10:05,882 | INFO     | did not find any defunct processes belonging to 29760
[2025-06-05 02:10:59] 2025-06-05 00:10:05,911 | INFO     | did not find any defunct processes belonging to 29760
[2025-06-05 02:10:59] 2025-06-05 00:10:05,911 | INFO     | ready for new job
[2025-06-05 02:10:59] 2025-06-05 00:10:05,911 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 02:10:59] 2025-06-05 00:10:05,913 | INFO     | **************************************
[2025-06-05 02:10:59] 2025-06-05 00:10:05,913 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 02:10:59] 2025-06-05 00:10:05,913 | INFO     | **************************************
[2025-06-05 02:10:59] 2025-06-05 00:10:05,913 | INFO     | 
[2025-06-05 02:10:59] 2025-06-05 00:10:05,919 | INFO     | architecture information:
[2025-06-05 02:10:59] 2025-06-05 00:10:05,920 | INFO     | executing command: cat /etc/os-release
[2025-06-05 02:10:59] 2025-06-05 00:10:05,992 | INFO     | cat /etc/os-release:
[2025-06-05 02:10:59] NAME="CentOS Linux"
[2025-06-05 02:10:59] VERSION="7 (Core)"
[2025-06-05 02:10:59] ID="centos"
[2025-06-05 02:10:59] ID_LIKE="rhel fedora"
[2025-06-05 02:10:59] VERSION_ID="7"
[2025-06-05 02:10:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 02:10:59] ANSI_COLOR="0;31"
[2025-06-05 02:10:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 02:10:59] HOME_URL="https://www.centos.org/"
[2025-06-05 02:10:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 02:10:59] 
[2025-06-05 02:10:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 02:10:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 02:10:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 02:10:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 02:10:59] 
[2025-06-05 02:10:59] 2025-06-05 00:10:05,992 | INFO     | **************************************
[2025-06-05 02:10:59] 2025-06-05 00:10:06,496 | INFO     | executing command: df -mP /scratch/.boinc/slots/5
[2025-06-05 02:10:59] 2025-06-05 00:10:06,633 | INFO     | sufficient remaining disk space (1659150270464 B)
[2025-06-05 02:10:59] 2025-06-05 00:10:06,633 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 02:10:59] 2025-06-05 00:10:06,633 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 02:10:59] 2025-06-05 00:10:06,633 | INFO     | update_server=False
[2025-06-05 02:10:59] 2025-06-05 00:10:06,633 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 02:10:59] 2025-06-05 00:10:06,635 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 02:10:59] 2025-06-05 00:10:06,636 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 02:10:59] 2025-06-05 00:10:06,636 | INFO     | aborting loop
[2025-06-05 02:10:59] 2025-06-05 00:10:06,715 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 02:10:59] 2025-06-05 00:10:06,715 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 02:10:59] 2025-06-05 00:10:06,715 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 02:10:59] 2025-06-05 00:10:06,822 | INFO     | all data control threads have been joined
[2025-06-05 02:10:59] 2025-06-05 00:10:07,487 | INFO     | all payload control threads have been joined
[2025-06-05 02:10:59] 2025-06-05 00:10:07,581 | INFO     | all job control threads have been joined
[2025-06-05 02:10:59] 2025-06-05 00:10:07,640 | INFO     | [job] retrieve thread has finished
[2025-06-05 02:10:59] 2025-06-05 00:10:07,642 | INFO     | [job] job monitor thread has finished
[2025-06-05 02:10:59] 2025-06-05 00:10:07,702 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 02:10:59] 2025-06-05 00:10:07,722 | INFO     | [data] copytool_in thread has finished
[2025-06-05 02:10:59] 2025-06-05 00:10:07,773 | INFO     | [job] validate thread has finished
[2025-06-05 02:10:59] 2025-06-05 00:10:07,827 | INFO     | [data] control thread has finished
[2025-06-05 02:10:59] 2025-06-05 00:10:08,037 | INFO     | [payload] failed_post thread has finished
[2025-06-05 02:10:59] 2025-06-05 00:10:08,285 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 02:10:59] 2025-06-05 00:10:08,376 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 02:10:59] 2025-06-05 00:10:08,479 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 02:10:59] 2025-06-05 00:10:08,486 | INFO     | [payload] validate_post thread has finished
[2025-06-05 02:10:59] 2025-06-05 00:10:08,493 | INFO     | [payload] control thread has finished
[2025-06-05 02:10:59] 2025-06-05 00:10:08,588 | INFO     | [job] control thread has finished
[2025-06-05 02:10:59] 2025-06-05 00:10:08,642 | INFO     | [data] copytool_out thread has finished
[2025-06-05 02:10:59] 2025-06-05 00:10:08,720 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 02:10:59] 2025-06-05 00:10:09,486 | INFO     | [job] queue monitor thread has finished
[2025-06-05 02:10:59] 2025-06-05 00:10:09,549 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 02:10:59] 2025-06-05 00:10:13,558 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 02:10:59] 2025-06-05 00:10:13,897 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140644811687744)>', '<ExcThread(monitor, started 140644316071680)>']
[2025-06-05 02:10:59] 2025-06-05 00:10:14,763 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 02:10:59] 2025-06-05 00:10:14,763 | INFO     | [monitor] control thread has ended
[2025-06-05 02:10:59] 2025-06-05 00:10:18,923 | INFO     | all workflow threads have been joined
[2025-06-05 02:10:59] 2025-06-05 00:10:18,923 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 02:10:59] 2025-06-05 00:10:18,923 | INFO     | traces error code: 0
[2025-06-05 02:10:59] 2025-06-05 00:10:18,923 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 02:10:59] 2025-06-05 00:10:19,169 [wrapper] ==== pilot stdout END ====
[2025-06-05 02:10:59] 2025-06-05 00:10:19,190 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 02:10:59] 2025-06-05 00:10:19,200 [wrapper] pilotpid: 4178770
[2025-06-05 02:10:59] 2025-06-05 00:10:19,217 [wrapper] Pilot exit status: 0
[2025-06-05 02:10:59] 2025-06-05 00:10:19,340 [wrapper] pandaids: 6679017608
[2025-06-05 02:10:59] 2025-06-05 00:10:19,677 [wrapper] cleanup supervisor_pilot  626315 4178771
[2025-06-05 02:10:59] 2025-06-05 00:10:19,683 [wrapper] Test setup, not cleaning
[2025-06-05 02:10:59] 2025-06-05 00:10:19,725 [wrapper] apfmon messages muted
[2025-06-05 02:10:59] 2025-06-05 00:10:19,762 [wrapper] ==== wrapper stdout END ====
[2025-06-05 02:10:59] 2025-06-05 00:10:19,776 [wrapper] ==== wrapper stderr END ====
[2025-06-05 02:10:59]  *** Error codes and diagnostics ***
[2025-06-05 02:10:59]     "exeErrorCode": 0,
[2025-06-05 02:10:59]     "exeErrorDiag": "",
[2025-06-05 02:10:59]     "pilotErrorCode": 0,
[2025-06-05 02:10:59]     "pilotErrorDiag": "",
[2025-06-05 02:10:59]  *** Listing of results directory ***
[2025-06-05 02:10:59] total 383400
[2025-06-05 02:10:59] -rw-r--r-- 1 boinc boinc    495897 Jun  4 10:31 pilot3.tar.gz
[2025-06-05 02:10:59] -rw-r--r-- 1 boinc boinc      5111 Jun  4 10:43 queuedata.json
[2025-06-05 02:10:59] -rwx------ 1 boinc boinc     37140 Jun  4 10:43 runpilot2-wrapper.sh
[2025-06-05 02:10:59] -rw-r--r-- 1 boinc boinc       100 Jun  5 00:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 02:10:59] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 00:41 run_atlas
[2025-06-05 02:10:59] -rw-r--r-- 1 boinc boinc       105 Jun  5 00:41 job.xml
[2025-06-05 02:10:59] -rw-r--r-- 1 boinc boinc      6664 Jun  5 00:41 init_data.xml
[2025-06-05 02:10:59] -rw-r--r-- 2 boinc boinc 216096826 Jun  5 00:41 EVNT.45006593._001444.pool.root.1
[2025-06-05 02:10:59] -rw-r--r-- 2 boinc boinc     15093 Jun  5 00:41 start_atlas.sh
[2025-06-05 02:10:59] drwxrwx--x 2 boinc boinc      4096 Jun  5 00:41 shared
[2025-06-05 02:10:59] -rw-r--r-- 2 boinc boinc    508885 Jun  5 00:41 input.tar.gz
[2025-06-05 02:10:59] -rw-r--r-- 1 boinc boinc         0 Jun  5 00:41 boinc_lockfile
[2025-06-05 02:10:59] -rw-r--r-- 1 boinc boinc      2524 Jun  5 00:42 pandaJob.out
[2025-06-05 02:10:59] -rw------- 1 boinc boinc    987032 Jun  5 00:43 agis_schedconf.cvmfs.json
[2025-06-05 02:10:59] -rw------- 1 boinc boinc   1598969 Jun  5 00:43 agis_ddmendpoints.agis.ALL.json
[2025-06-05 02:10:59] drwx------ 4 boinc boinc      4096 Jun  5 00:43 pilot3
[2025-06-05 02:10:59] -rw------- 1 boinc boinc 170967100 Jun  5 02:08 HITS.45006595._055780.pool.root.1
[2025-06-05 02:10:59] -rw-r--r-- 1 boinc boinc       529 Jun  5 02:08 boinc_task_state.xml
[2025-06-05 02:10:59] -rw------- 1 boinc boinc      1025 Jun  5 02:09 memory_monitor_summary.json
[2025-06-05 02:10:59] -rw------- 1 boinc boinc    378009 Jun  5 02:09 log.45006595._055780.job.log.tgz.1
[2025-06-05 02:10:59] -rw------- 1 boinc boinc        95 Jun  5 02:09 pilot_heartbeat.json
[2025-06-05 02:10:59] -rw------- 1 boinc boinc      7695 Jun  5 02:10 heartbeat.json
[2025-06-05 02:10:59] -rw------- 1 boinc boinc      4356 Jun  5 02:10 pilotlog.txt
[2025-06-05 02:10:59] -rw------- 1 boinc boinc    472944 Jun  5 02:10 log.45006595._055780.job.log.1
[2025-06-05 02:10:59] -rw------- 1 boinc boinc       357 Jun  5 02:10 output.list
[2025-06-05 02:10:59] -rw-r--r-- 1 boinc boinc       620 Jun  5 02:10 runtime_log
[2025-06-05 02:10:59] -rw------- 1 boinc boinc    870400 Jun  5 02:10 result.tar.gz
[2025-06-05 02:10:59] -rw-r--r-- 1 boinc boinc      8720 Jun  5 02:10 runtime_log.err
[2025-06-05 02:10:59] -rw------- 1 boinc boinc       662 Jun  5 02:10 HIMMDm0tyg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmkyaKDmQYFZyn.diag
[2025-06-05 02:10:59] -rw-r--r-- 1 boinc boinc        26 Jun  5 02:10 wrapper_checkpoint.txt
[2025-06-05 02:10:59] -rw-r--r-- 1 boinc boinc      8192 Jun  5 02:10 boinc_mmap_file
[2025-06-05 02:10:59] -rw-r--r-- 1 boinc boinc     22414 Jun  5 02:10 stderr.txt
[2025-06-05 02:10:59] HITS file was successfully produced:
[2025-06-05 02:10:59] -rw------- 1 boinc boinc 170967100 Jun  5 02:08 shared/HITS.pool.root.1
[2025-06-05 02:10:59]  *** Contents of shared directory: ***
[2025-06-05 02:10:59] total 379372
[2025-06-05 02:10:59] -rw-r--r-- 2 boinc boinc 216096826 Jun  5 00:41 ATLAS.root_0
[2025-06-05 02:10:59] -rw-r--r-- 2 boinc boinc     15093 Jun  5 00:41 start_atlas.sh
[2025-06-05 02:10:59] -rw-r--r-- 2 boinc boinc    508885 Jun  5 00:41 input.tar.gz
[2025-06-05 02:10:59] -rw------- 1 boinc boinc 170967100 Jun  5 02:08 HITS.pool.root.1
[2025-06-05 02:10:59] -rw------- 1 boinc boinc    870400 Jun  5 02:10 result.tar.gz
02:11:00 (4156672): run_atlas exited; CPU time 33471.928531
02:11:00 (4156672): called boinc_finish(0)

</stderr_txt>
]]>

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