Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:33:51 (4096452): wrapper (7.7.26015): starting
00:33:51 (4096452): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 00:33:51] Arguments: --nthreads 12
[2025-06-05 00:33:51] Threads: 12
[2025-06-05 00:33:51] Checking for CVMFS
[2025-06-05 00:33:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 00:33:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 00:33:52] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 00:33:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 00:33:53] 2.12.7.0 8883 8364 171624 146797 3 398 34328480 46080000 37510 130560 0 57430828 99.931 12035484 22395 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-06-05 00:33:53] CVMFS is ok
[2025-06-05 00:33:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 00:33:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 00:33:53] Further information can be found at the LHC@home message board.
[2025-06-05 00:33:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 00:33:53] Checking for apptainer binary...
[2025-06-05 00:33:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 00:33:53] Running /usr/bin/apptainer --version
[2025-06-05 00:33:53] apptainer version 1.4.1-1.el9
[2025-06-05 00:33:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 00:41:52] mff2102.farm.particle.cz
[2025-06-05 00:41:52] apptainer works
[2025-06-05 00:41:53] Set ATHENA_PROC_NUMBER=12
[2025-06-05 00:41:53] Set ATHENA_CORE_NUMBER=12
[2025-06-05 00:41:53] Starting ATLAS job with PandaID=6678363868
[2025-06-05 00:41:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 02:10:59]  *** The last 200 lines of the pilot log: ***
[2025-06-05 02:10:59] 2025-06-05 00:02:55,220 | INFO     | stage-out finished correctly
[2025-06-05 02:10:59] 2025-06-05 00:02:55,382 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 02:10:59] 2025-06-05 00:02:55,894 | WARNING  | process 29784 can no longer be monitored (due to stat problems) - aborting
[2025-06-05 02:10:59] 2025-06-05 00:02:55,894 | INFO     | using path: /scratch/.boinc/slots/6/PanDA_Pilot-6678363868/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 02:10:59] 2025-06-05 00:02:56,686 | INFO     | job 6678363868 has state=finished
[2025-06-05 02:10:59] 2025-06-05 00:02:56,686 | INFO     | preparing for final server update for job 6678363868 in state='finished'
[2025-06-05 02:10:59] 2025-06-05 00:02:56,686 | INFO     | this job has now completed (state=finished)
[2025-06-05 02:10:59] 2025-06-05 00:02:56,687 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 02:10:59] 2025-06-05 00:02:56,687 | INFO     | log transfer has been attempted: DONE
[2025-06-05 02:10:59] 2025-06-05 00:02:56,687 | INFO     | job 6678363868 has finished - writing final server update
[2025-06-05 02:10:59] 2025-06-05 00:02:56,687 | INFO     | total number of processed events: 400 (read)
[2025-06-05 02:10:59] 2025-06-05 00:02:56,715 | INFO     | executing command: lscpu
[2025-06-05 02:10:59] 2025-06-05 00:02:56,775 | INFO     | number of running child processes to parent process 29784: 1
[2025-06-05 02:10:59] 2025-06-05 00:02:56,778 | INFO     | maximum number of monitored processes: 6
[2025-06-05 02:10:59] 2025-06-05 00:02:56,931 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 02:10:59] 2025-06-05 00:02:59,284 | INFO     | monitor loop #331: job 0:6678363868 is in state 'finished'
[2025-06-05 02:10:59] 2025-06-05 00:02:59,284 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:10:59] 2025-06-05 00:03:01,789 | INFO     | monitor loop #332: job 0:6678363868 is in state 'finished'
[2025-06-05 02:10:59] 2025-06-05 00:03:01,789 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:10:59] 2025-06-05 00:03:04,293 | INFO     | monitor loop #333: job 0:6678363868 is in state 'finished'
[2025-06-05 02:10:59] 2025-06-05 00:03:04,293 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:10:59] 2025-06-05 00:03:06,813 | INFO     | monitor loop #334: job 0:6678363868 is in state 'finished'
[2025-06-05 02:10:59] 2025-06-05 00:03:06,817 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:10:59] 2025-06-05 00:03:06,840 | INFO     | PID=4179692 has CPU usage=15.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-05 02:10:59] 2025-06-05 00:03:06,841 | INFO     | .. there are 94 such processes running
[2025-06-05 02:10:59] 2025-06-05 00:03:09,322 | INFO     | monitor loop #335: job 0:6678363868 is in state 'finished'
[2025-06-05 02:10:59] 2025-06-05 00:03:09,324 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:10:59] 2025-06-05 00:03:11,831 | INFO     | monitor loop #336: job 0:6678363868 is in state 'finished'
[2025-06-05 02:10:59] 2025-06-05 00:03:11,831 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:10:59] 2025-06-05 00:03:14,336 | INFO     | monitor loop #337: job 0:6678363868 is in state 'finished'
[2025-06-05 02:10:59] 2025-06-05 00:03:14,336 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:10:59] 2025-06-05 00:03:16,843 | INFO     | monitor loop #338: job 0:6678363868 is in state 'finished'
[2025-06-05 02:10:59] 2025-06-05 00:03:16,843 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:10:59] 2025-06-05 00:03:19,351 | INFO     | monitor loop #339: job 0:6678363868 is in state 'finished'
[2025-06-05 02:10:59] 2025-06-05 00:03:19,351 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:10:59] 2025-06-05 00:03:21,859 | INFO     | monitor loop #340: job 0:6678363868 is in state 'finished'
[2025-06-05 02:10:59] 2025-06-05 00:03:21,859 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:10:59] 2025-06-05 00:03:24,365 | INFO     | monitor loop #341: job 0:6678363868 is in state 'finished'
[2025-06-05 02:10:59] 2025-06-05 00:03:24,365 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:10:59] 2025-06-05 00:03:26,410 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 02:10:59] 2025-06-05 00:03:26,410 | INFO     | using path: /scratch/.boinc/slots/6/PanDA_Pilot-6678363868/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 02:10:59] 2025-06-05 00:03:26,411 | INFO     | extracted standard info from prmon json
[2025-06-05 02:10:59] 2025-06-05 00:03:26,411 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 02:10:59] 2025-06-05 00:03:26,411 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 02:10:59] 2025-06-05 00:03:26,412 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 02:10:59] 2025-06-05 00:03:26,412 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 02:10:59] 2025-06-05 00:03:26,413 | INFO     | fitting pss+swap vs Time
[2025-06-05 02:10:59] 2025-06-05 00:03:26,418 | INFO     | sum of square deviations: 101843770.0
[2025-06-05 02:10:59] 2025-06-05 00:03:26,418 | INFO     | sum of deviations: 1605803893.9999995
[2025-06-05 02:10:59] 2025-06-05 00:03:26,418 | INFO     | mean x: 1749079532.0
[2025-06-05 02:10:59] 2025-06-05 00:03:26,418 | INFO     | mean y: 2676065.5362318843
[2025-06-05 02:10:59] 2025-06-05 00:03:26,418 | INFO     | -- intersect: -27575630623.241066
[2025-06-05 02:10:59] 2025-06-05 00:03:26,418 | INFO     | intersect: -27575630623.241066
[2025-06-05 02:10:59] 2025-06-05 00:03:26,419 | INFO     | chi2: 0.09251941436812454
[2025-06-05 02:10:59] 2025-06-05 00:03:26,419 | INFO     | -- intersect: -27575630623.241066
[2025-06-05 02:10:59] 2025-06-05 00:03:26,419 | INFO     | current memory leak: 15.77 B/s (using 69 data points, chi2=0.09)
[2025-06-05 02:10:59] 2025-06-05 00:03:26,419 | INFO     | ..............................
[2025-06-05 02:10:59] 2025-06-05 00:03:26,420 | INFO     | . Timing measurements:
[2025-06-05 02:10:59] 2025-06-05 00:03:26,420 | INFO     | . get job = 0 s
[2025-06-05 02:10:59] 2025-06-05 00:03:26,420 | INFO     | . initial setup = 4 s
[2025-06-05 02:10:59] 2025-06-05 00:03:26,420 | INFO     | . payload setup = 51 s
[2025-06-05 02:10:59] 2025-06-05 00:03:26,420 | INFO     | . stage-in = 0 s
[2025-06-05 02:10:59] 2025-06-05 00:03:26,420 | INFO     | . payload execution = 4652 s
[2025-06-05 02:10:59] 2025-06-05 00:03:26,420 | INFO     | . stage-out = 1 s
[2025-06-05 02:10:59] 2025-06-05 00:03:26,420 | INFO     | . log creation = 0 s
[2025-06-05 02:10:59] 2025-06-05 00:03:26,420 | INFO     | ..............................
[2025-06-05 02:10:59] 2025-06-05 00:03:26,713 | INFO     | 
[2025-06-05 02:10:59] 2025-06-05 00:03:26,713 | INFO     | job summary report
[2025-06-05 02:10:59] 2025-06-05 00:03:26,713 | INFO     | --------------------------------------------------
[2025-06-05 02:10:59] 2025-06-05 00:03:26,713 | INFO     | PanDA job id: 6678363868
[2025-06-05 02:10:59] 2025-06-05 00:03:26,713 | INFO     | task id: 45006595
[2025-06-05 02:10:59] 2025-06-05 00:03:26,713 | INFO     | errors: (none)
[2025-06-05 02:10:59] 2025-06-05 00:03:26,713 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 02:10:59] 2025-06-05 00:03:26,713 | INFO     | pilot state: finished 
[2025-06-05 02:10:59] 2025-06-05 00:03:26,713 | INFO     | transexitcode: 0
[2025-06-05 02:10:59] 2025-06-05 00:03:26,714 | INFO     | exeerrorcode: 0
[2025-06-05 02:10:59] 2025-06-05 00:03:26,714 | INFO     | exeerrordiag: 
[2025-06-05 02:10:59] 2025-06-05 00:03:26,714 | INFO     | exitcode: 0
[2025-06-05 02:10:59] 2025-06-05 00:03:26,714 | INFO     | exitmsg: OK
[2025-06-05 02:10:59] 2025-06-05 00:03:26,714 | INFO     | cpuconsumptiontime: 34512 s
[2025-06-05 02:10:59] 2025-06-05 00:03:26,714 | INFO     | nevents: 400
[2025-06-05 02:10:59] 2025-06-05 00:03:26,714 | INFO     | neventsw: 0
[2025-06-05 02:10:59] 2025-06-05 00:03:26,714 | INFO     | pid: 29784
[2025-06-05 02:10:59] 2025-06-05 00:03:26,714 | INFO     | pgrp: 29784
[2025-06-05 02:10:59] 2025-06-05 00:03:26,714 | INFO     | corecount: 12
[2025-06-05 02:10:59] 2025-06-05 00:03:26,714 | INFO     | event service: False
[2025-06-05 02:10:59] 2025-06-05 00:03:26,714 | INFO     | sizes: {0: 2397172, 1: 2397371, 12: 2397371, 22: 2397399, 33: 2397689, 44: 2397689, 4708: 2423938, 4711: 2432937, 4742: 2433051}
[2025-06-05 02:10:59] 2025-06-05 00:03:26,714 | INFO     | --------------------------------------------------
[2025-06-05 02:10:59] 2025-06-05 00:03:26,714 | INFO     | 
[2025-06-05 02:10:59] 2025-06-05 00:03:26,715 | INFO     | executing command: ls -lF /scratch/.boinc/slots/6
[2025-06-05 02:10:59] 2025-06-05 00:03:26,805 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:03:26,805 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:03:26,805 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:03:26,806 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:03:26,806 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:03:26,806 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:03:26,806 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:03:26,806 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:03:26,806 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:03:26,806 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:03:26,806 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:03:26,806 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:03:26,806 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:03:26,806 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:03:26,806 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:03:26,807 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:03:26,807 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:03:26,807 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 02:10:59] 2025-06-05 00:03:26,807 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:03:26,807 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 02:10:59] 2025-06-05 00:03:26,807 | INFO     | job 6678363868 has completed (purged errors)
[2025-06-05 02:10:59] 2025-06-05 00:03:26,807 | INFO     | overall cleanup function is called
[2025-06-05 02:10:59] 2025-06-05 00:03:27,819 | INFO     | --- collectZombieJob: --- 10, [29784]
[2025-06-05 02:10:59] 2025-06-05 00:03:27,819 | INFO     | zombie collector waiting for pid 29784
[2025-06-05 02:10:59] 2025-06-05 00:03:27,819 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 02:10:59] 2025-06-05 00:03:27,819 | INFO     | collected zombie processes
[2025-06-05 02:10:59] 2025-06-05 00:03:27,819 | INFO     | will attempt to kill all subprocesses of pid=29784
[2025-06-05 02:10:59] 2025-06-05 00:03:28,650 | INFO     | process IDs to be killed: [29784] (in reverse order)
[2025-06-05 02:10:59] 2025-06-05 00:03:29,120 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 02:10:59] 2025-06-05 00:03:29,120 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 02:10:59] 2025-06-05 00:03:29,179 | INFO     | did not find any defunct processes belonging to 29784
[2025-06-05 02:10:59] 2025-06-05 00:03:29,267 | INFO     | did not find any defunct processes belonging to 29784
[2025-06-05 02:10:59] 2025-06-05 00:03:29,268 | INFO     | ready for new job
[2025-06-05 02:10:59] 2025-06-05 00:03:29,268 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 02:10:59] 2025-06-05 00:03:29,269 | INFO     | **************************************
[2025-06-05 02:10:59] 2025-06-05 00:03:29,269 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 02:10:59] 2025-06-05 00:03:29,270 | INFO     | **************************************
[2025-06-05 02:10:59] 2025-06-05 00:03:29,270 | INFO     | 
[2025-06-05 02:10:59] 2025-06-05 00:03:29,279 | INFO     | architecture information:
[2025-06-05 02:10:59] 2025-06-05 00:03:29,283 | INFO     | executing command: cat /etc/os-release
[2025-06-05 02:10:59] 2025-06-05 00:03:29,415 | INFO     | cat /etc/os-release:
[2025-06-05 02:10:59] NAME="CentOS Linux"
[2025-06-05 02:10:59] VERSION="7 (Core)"
[2025-06-05 02:10:59] ID="centos"
[2025-06-05 02:10:59] ID_LIKE="rhel fedora"
[2025-06-05 02:10:59] VERSION_ID="7"
[2025-06-05 02:10:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 02:10:59] ANSI_COLOR="0;31"
[2025-06-05 02:10:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 02:10:59] HOME_URL="https://www.centos.org/"
[2025-06-05 02:10:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 02:10:59] 
[2025-06-05 02:10:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 02:10:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 02:10:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 02:10:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 02:10:59] 
[2025-06-05 02:10:59] 2025-06-05 00:03:29,415 | INFO     | **************************************
[2025-06-05 02:10:59] 2025-06-05 00:03:29,919 | INFO     | executing command: df -mP /scratch/.boinc/slots/6
[2025-06-05 02:10:59] 2025-06-05 00:03:30,045 | INFO     | sufficient remaining disk space (1659274002432 B)
[2025-06-05 02:10:59] 2025-06-05 00:03:30,046 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 02:10:59] 2025-06-05 00:03:30,046 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 02:10:59] 2025-06-05 00:03:30,046 | INFO     | update_server=False
[2025-06-05 02:10:59] 2025-06-05 00:03:30,046 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 02:10:59] 2025-06-05 00:03:30,083 | INFO     | PID=4179692 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-05 02:10:59] 2025-06-05 00:03:30,084 | INFO     | .. there are 94 such processes running
[2025-06-05 02:10:59] 2025-06-05 00:03:30,084 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 02:10:59] 2025-06-05 00:03:30,084 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 02:10:59] 2025-06-05 00:03:30,084 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 02:10:59] 2025-06-05 00:03:30,389 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 02:10:59] 2025-06-05 00:03:30,389 | INFO     | aborting loop
[2025-06-05 02:10:59] 2025-06-05 00:03:30,419 | INFO     | all payload control threads have been joined
[2025-06-05 02:10:59] 2025-06-05 00:03:30,923 | INFO     | all data control threads have been joined
[2025-06-05 02:10:59] 2025-06-05 00:03:30,977 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 02:10:59] 2025-06-05 00:03:31,052 | INFO     | [job] retrieve thread has finished
[2025-06-05 02:10:59] 2025-06-05 00:03:31,112 | INFO     | all job control threads have been joined
[2025-06-05 02:10:59] 2025-06-05 00:03:31,236 | INFO     | [data] copytool_in thread has finished
[2025-06-05 02:10:59] 2025-06-05 00:03:31,395 | INFO     | [job] job monitor thread has finished
[2025-06-05 02:10:59] 2025-06-05 00:03:31,409 | INFO     | [payload] failed_post thread has finished
[2025-06-05 02:10:59] 2025-06-05 00:03:31,425 | INFO     | [payload] control thread has finished
[2025-06-05 02:10:59] 2025-06-05 00:03:31,558 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 02:10:59] 2025-06-05 00:03:31,565 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 02:10:59] 2025-06-05 00:03:31,754 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 02:10:59] 2025-06-05 00:03:31,878 | INFO     | [payload] validate_post thread has finished
[2025-06-05 02:10:59] 2025-06-05 00:03:31,929 | INFO     | [data] control thread has finished
[2025-06-05 02:10:59] 2025-06-05 00:03:32,119 | INFO     | [job] control thread has finished
[2025-06-05 02:10:59] 2025-06-05 00:03:32,187 | INFO     | [job] validate thread has finished
[2025-06-05 02:10:59] 2025-06-05 00:03:32,226 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 02:10:59] 2025-06-05 00:03:32,324 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 02:10:59] 2025-06-05 00:03:32,571 | INFO     | [job] queue monitor thread has finished
[2025-06-05 02:10:59] 2025-06-05 00:03:32,984 | INFO     | [data] copytool_out thread has finished
[2025-06-05 02:10:59] 2025-06-05 00:03:33,161 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 02:10:59] 2025-06-05 00:03:37,173 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 02:10:59] 2025-06-05 00:03:38,019 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139654084831040)>', '<ExcThread(monitor, started 139653000718080)>']
[2025-06-05 02:10:59] 2025-06-05 00:03:38,133 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 02:10:59] 2025-06-05 00:03:38,133 | INFO     | [monitor] control thread has ended
[2025-06-05 02:10:59] 2025-06-05 00:03:43,045 | INFO     | all workflow threads have been joined
[2025-06-05 02:10:59] 2025-06-05 00:03:43,045 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 02:10:59] 2025-06-05 00:03:43,045 | INFO     | traces error code: 0
[2025-06-05 02:10:59] 2025-06-05 00:03:43,045 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 02:10:59] 2025-06-05 00:03:43,340 [wrapper] ==== pilot stdout END ====
[2025-06-05 02:10:59] 2025-06-05 00:03:43,384 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 02:10:59] 2025-06-05 00:03:43,423 [wrapper] pilotpid: 4179692
[2025-06-05 02:10:59] 2025-06-05 00:03:43,446 [wrapper] Pilot exit status: 0
[2025-06-05 02:10:59] 2025-06-05 00:03:43,576 [wrapper] pandaids: 6678363868
[2025-06-05 02:10:59] 2025-06-05 00:03:43,988 [wrapper] cleanup supervisor_pilot  626395 4179693
[2025-06-05 02:10:59] 2025-06-05 00:03:43,994 [wrapper] Test setup, not cleaning
[2025-06-05 02:10:59] 2025-06-05 00:03:44,010 [wrapper] apfmon messages muted
[2025-06-05 02:10:59] 2025-06-05 00:03:44,040 [wrapper] ==== wrapper stdout END ====
[2025-06-05 02:10:59] 2025-06-05 00:03:44,066 [wrapper] ==== wrapper stderr END ====
[2025-06-05 02:10:59]  *** Error codes and diagnostics ***
[2025-06-05 02:10:59]     "exeErrorCode": 0,
[2025-06-05 02:10:59]     "exeErrorDiag": "",
[2025-06-05 02:10:59]     "pilotErrorCode": 0,
[2025-06-05 02:10:59]     "pilotErrorDiag": "",
[2025-06-05 02:10:59]  *** Listing of results directory ***
[2025-06-05 02:10:59] total 393104
[2025-06-05 02:10:59] -rw-r--r-- 1 boinc boinc    495897 Jun  4 06:58 pilot3.tar.gz
[2025-06-05 02:10:59] -rw-r--r-- 1 boinc boinc      5111 Jun  4 07:57 queuedata.json
[2025-06-05 02:10:59] -rwx------ 1 boinc boinc     37140 Jun  4 07:57 runpilot2-wrapper.sh
[2025-06-05 02:10:59] -rw-r--r-- 1 boinc boinc       100 Jun  5 00:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 02:10:59] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 00:33 run_atlas
[2025-06-05 02:10:59] -rw-r--r-- 1 boinc boinc       105 Jun  5 00:33 job.xml
[2025-06-05 02:10:59] -rw-r--r-- 2 boinc boinc 216561468 Jun  5 00:33 EVNT.45006593._002151.pool.root.1
[2025-06-05 02:10:59] -rw-r--r-- 1 boinc boinc      6664 Jun  5 00:33 init_data.xml
[2025-06-05 02:10:59] -rw-r--r-- 2 boinc boinc    508882 Jun  5 00:33 input.tar.gz
[2025-06-05 02:10:59] -rw-r--r-- 2 boinc boinc     15093 Jun  5 00:33 start_atlas.sh
[2025-06-05 02:10:59] drwxrwx--x 2 boinc boinc      4096 Jun  5 00:33 shared
[2025-06-05 02:10:59] -rw-r--r-- 1 boinc boinc         0 Jun  5 00:33 boinc_lockfile
[2025-06-05 02:10:59] -rw-r--r-- 1 boinc boinc      2525 Jun  5 00:41 pandaJob.out
[2025-06-05 02:10:59] -rw------- 1 boinc boinc    987032 Jun  5 00:43 agis_schedconf.cvmfs.json
[2025-06-05 02:10:59] -rw------- 1 boinc boinc   1598969 Jun  5 00:43 agis_ddmendpoints.agis.ALL.json
[2025-06-05 02:10:59] drwx------ 4 boinc boinc      4096 Jun  5 00:43 pilot3
[2025-06-05 02:10:59] -rw------- 1 boinc boinc 180546817 Jun  5 02:02 HITS.45006595._053743.pool.root.1
[2025-06-05 02:10:59] -rw-r--r-- 1 boinc boinc       529 Jun  5 02:02 boinc_task_state.xml
[2025-06-05 02:10:59] -rw------- 1 boinc boinc      1025 Jun  5 02:02 memory_monitor_summary.json
[2025-06-05 02:10:59] -rw------- 1 boinc boinc        95 Jun  5 02:02 pilot_heartbeat.json
[2025-06-05 02:10:59] -rw------- 1 boinc boinc    359489 Jun  5 02:02 log.45006595._053743.job.log.tgz.1
[2025-06-05 02:10:59] -rw------- 1 boinc boinc      7696 Jun  5 02:03 heartbeat.json
[2025-06-05 02:10:59] -rw------- 1 boinc boinc      4751 Jun  5 02:03 pilotlog.txt
[2025-06-05 02:10:59] -rw------- 1 boinc boinc    439599 Jun  5 02:03 log.45006595._053743.job.log.1
[2025-06-05 02:10:59] -rw------- 1 boinc boinc       357 Jun  5 02:03 output.list
[2025-06-05 02:10:59] -rw-r--r-- 1 boinc boinc       620 Jun  5 02:03 runtime_log
[2025-06-05 02:10:59] -rw------- 1 boinc boinc    819200 Jun  5 02:03 result.tar.gz
[2025-06-05 02:10:59] -rw------- 1 boinc boinc       662 Jun  5 02:03 UiPNDmfIwg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlQnKDmPzzQym.diag
[2025-06-05 02:10:59] -rw-r--r-- 1 boinc boinc      8720 Jun  5 02:03 runtime_log.err
[2025-06-05 02:10:59] -rw-r--r-- 1 boinc boinc        26 Jun  5 02:10 wrapper_checkpoint.txt
[2025-06-05 02:10:59] -rw-r--r-- 1 boinc boinc      8192 Jun  5 02:10 boinc_mmap_file
[2025-06-05 02:10:59] -rw-r--r-- 1 boinc boinc     22366 Jun  5 02:10 stderr.txt
[2025-06-05 02:10:59] HITS file was successfully produced:
[2025-06-05 02:10:59] -rw------- 1 boinc boinc 180546817 Jun  5 02:02 shared/HITS.pool.root.1
[2025-06-05 02:10:59]  *** Contents of shared directory: ***
[2025-06-05 02:10:59] total 389128
[2025-06-05 02:10:59] -rw-r--r-- 2 boinc boinc 216561468 Jun  5 00:33 ATLAS.root_0
[2025-06-05 02:10:59] -rw-r--r-- 2 boinc boinc    508882 Jun  5 00:33 input.tar.gz
[2025-06-05 02:10:59] -rw-r--r-- 2 boinc boinc     15093 Jun  5 00:33 start_atlas.sh
[2025-06-05 02:10:59] -rw------- 1 boinc boinc 180546817 Jun  5 02:02 HITS.pool.root.1
[2025-06-05 02:10:59] -rw------- 1 boinc boinc    819200 Jun  5 02:03 result.tar.gz
02:11:01 (4096452): run_atlas exited; CPU time 34775.973869
02:11:01 (4096452): called boinc_finish(0)

</stderr_txt>
]]>

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