Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:24:26 (821): wrapper (7.7.26015): starting
09:24:26 (821): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 09:24:26] Arguments: --nthreads 8
[2025-06-04 09:24:26] Threads: 8
[2025-06-04 09:24:26] Checking for CVMFS
[2025-06-04 09:24:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 09:24:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 09:24:26] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 09:24:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 09:24:27] 2.11.2.0 5091 18670 340032 146781 3 193 16649068 18432000 12455 130560 0 67502946 99.619 51077062 26925 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 09:24:27] CVMFS is ok
[2025-06-04 09:24:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 09:24:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 09:24:27] Further information can be found at the LHC@home message board.
[2025-06-04 09:24:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 09:24:27] Checking for apptainer binary...
[2025-06-04 09:24:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 09:24:27] Running /usr/bin/apptainer --version
[2025-06-04 09:24:27] apptainer version 1.3.2-1.el7
[2025-06-04 09:24:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 09:24:32] c-210-41.aglt2.org
[2025-06-04 09:24:32] apptainer works
[2025-06-04 09:24:32] Set ATHENA_PROC_NUMBER=8
[2025-06-04 09:24:32] Set ATHENA_CORE_NUMBER=8
[2025-06-04 09:24:32] Starting ATLAS job with PandaID=6679368702
[2025-06-04 09:24:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 11:30:59]  *** The last 200 lines of the pilot log: ***
[2025-06-04 11:30:59] 2025-06-04 15:30:43,816 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6679368702/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 11:30:59] 2025-06-04 15:30:43,817 | INFO     | extracted standard info from prmon json
[2025-06-04 11:30:59] 2025-06-04 15:30:43,817 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 11:30:59] 2025-06-04 15:30:43,817 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 11:30:59] 2025-06-04 15:30:43,817 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 11:30:59] 2025-06-04 15:30:43,817 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 11:30:59] 2025-06-04 15:30:43,819 | INFO     | fitting pss+swap vs Time
[2025-06-04 11:30:59] 2025-06-04 15:30:43,820 | INFO     | sum of square deviations: 549297806.7933904
[2025-06-04 11:30:59] 2025-06-04 15:30:43,820 | INFO     | sum of deviations: 9878105802.570253
[2025-06-04 11:30:59] 2025-06-04 15:30:43,820 | INFO     | mean x: 1749047339.0413222
[2025-06-04 11:30:59] 2025-06-04 15:30:43,820 | INFO     | mean y: 2438200.6859504133
[2025-06-04 11:30:59] 2025-06-04 15:30:43,820 | INFO     | -- intersect: -31450945474.03299
[2025-06-04 11:30:59] 2025-06-04 15:30:43,820 | INFO     | intersect: -31450945474.03299
[2025-06-04 11:30:59] 2025-06-04 15:30:43,821 | INFO     | chi2: 2.4817674427847103
[2025-06-04 11:30:59] 2025-06-04 15:30:43,821 | INFO     | sum of square deviations: 483977176.78448355
[2025-06-04 11:30:59] 2025-06-04 15:30:43,821 | INFO     | sum of deviations: 17350350376.534477
[2025-06-04 11:30:59] 2025-06-04 15:30:43,821 | INFO     | mean x: 1749047186.5431035
[2025-06-04 11:30:59] 2025-06-04 15:30:43,821 | INFO     | mean y: 2455028.293103448
[2025-06-04 11:30:59] 2025-06-04 15:30:43,822 | INFO     | -- intersect: -62700050311.39179
[2025-06-04 11:30:59] 2025-06-04 15:30:43,822 | INFO     | intersect: -62700050311.39179
[2025-06-04 11:30:59] 2025-06-04 15:30:43,822 | INFO     | chi2: 1.7161474340475158
[2025-06-04 11:30:59] 2025-06-04 15:30:43,822 | INFO     | current chi2=1.7161474340475158 (change=30.849788563513318 %)
[2025-06-04 11:30:59] 2025-06-04 15:30:43,822 | INFO     | sum of square deviations: 424051996.7747745
[2025-06-04 11:30:59] 2025-06-04 15:30:43,823 | INFO     | sum of deviations: 16779632307.837826
[2025-06-04 11:30:59] 2025-06-04 15:30:43,823 | INFO     | mean x: 1749047034.0450451
[2025-06-04 11:30:59] 2025-06-04 15:30:43,823 | INFO     | mean y: 2453575.4324324327
[2025-06-04 11:30:59] 2025-06-04 15:30:43,823 | INFO     | -- intersect: -69206903634.5464
[2025-06-04 11:30:59] 2025-06-04 15:30:43,823 | INFO     | intersect: -69206903634.5464
[2025-06-04 11:30:59] 2025-06-04 15:30:43,823 | INFO     | chi2: 1.718339265650395
[2025-06-04 11:30:59] 2025-06-04 15:30:43,823 | INFO     | current chi2=1.718339265650395 (change=-0.127718141191976 %)
[2025-06-04 11:30:59] 2025-06-04 15:30:43,823 | INFO     | right removable region: 110
[2025-06-04 11:30:59] 2025-06-04 15:30:43,823 | INFO     | sum of square deviations: 483974126.78448355
[2025-06-04 11:30:59] 2025-06-04 15:30:43,824 | INFO     | sum of deviations: -10761738524.568964
[2025-06-04 11:30:59] 2025-06-04 15:30:43,824 | INFO     | mean x: 1749047491.5431035
[2025-06-04 11:30:59] 2025-06-04 15:30:43,824 | INFO     | mean y: 2485630.9137931033
[2025-06-04 11:30:59] 2025-06-04 15:30:43,824 | INFO     | -- intersect: 38894630333.14913
[2025-06-04 11:30:59] 2025-06-04 15:30:43,824 | INFO     | intersect: 38894630333.14913
[2025-06-04 11:30:59] 2025-06-04 15:30:43,824 | INFO     | chi2: 0.8221955356563064
[2025-06-04 11:30:59] 2025-06-04 15:30:43,824 | INFO     | current chi2=0.8221955356563064 (change=66.87056484495793 %)
[2025-06-04 11:30:59] 2025-06-04 15:30:43,824 | INFO     | sum of square deviations: 424045896.7747745
[2025-06-04 11:30:59] 2025-06-04 15:30:43,825 | INFO     | sum of deviations: -11615645496.396397
[2025-06-04 11:30:59] 2025-06-04 15:30:43,825 | INFO     | mean x: 1749047644.0450451
[2025-06-04 11:30:59] 2025-06-04 15:30:43,825 | INFO     | mean y: 2487704.279279279
[2025-06-04 11:30:59] 2025-06-04 15:30:43,825 | INFO     | -- intersect: 47913144413.982704
[2025-06-04 11:30:59] 2025-06-04 15:30:43,825 | INFO     | intersect: 47913144413.982704
[2025-06-04 11:30:59] 2025-06-04 15:30:43,825 | INFO     | chi2: 0.8048626016356499
[2025-06-04 11:30:59] 2025-06-04 15:30:43,826 | INFO     | current chi2=0.8048626016356499 (change=2.108127965791096 %)
[2025-06-04 11:30:59] 2025-06-04 15:30:43,826 | INFO     | left removable region: 20
[2025-06-04 11:30:59] 2025-06-04 15:30:43,826 | INFO     | sum of square deviations: 226030044.32222202
[2025-06-04 11:30:59] 2025-06-04 15:30:43,826 | INFO     | sum of deviations: -2919277451.8
[2025-06-04 11:30:59] 2025-06-04 15:30:43,826 | INFO     | mean x: 1749047613.5444446
[2025-06-04 11:30:59] 2025-06-04 15:30:43,826 | INFO     | mean y: 2507592.2
[2025-06-04 11:30:59] 2025-06-04 15:30:43,826 | INFO     | -- intersect: 22592226917.59195
[2025-06-04 11:30:59] 2025-06-04 15:30:43,827 | INFO     | intersect: 22592226917.59195
[2025-06-04 11:30:59] 2025-06-04 15:30:43,827 | INFO     | chi2: 0.0018712109443450966
[2025-06-04 11:30:59] 2025-06-04 15:30:43,827 | INFO     | -- intersect: 22592226917.59195
[2025-06-04 11:30:59] 2025-06-04 15:30:43,827 | INFO     | current memory leak: -12.92 B/s (using 90 data points, chi2=0.00)
[2025-06-04 11:30:59] 2025-06-04 15:30:43,827 | INFO     | ..............................
[2025-06-04 11:30:59] 2025-06-04 15:30:43,827 | INFO     | . Timing measurements:
[2025-06-04 11:30:59] 2025-06-04 15:30:43,827 | INFO     | . get job = 0 s
[2025-06-04 11:30:59] 2025-06-04 15:30:43,827 | INFO     | . initial setup = 3 s
[2025-06-04 11:30:59] 2025-06-04 15:30:43,827 | INFO     | . payload setup = 51 s
[2025-06-04 11:30:59] 2025-06-04 15:30:43,827 | INFO     | . stage-in = 0 s
[2025-06-04 11:30:59] 2025-06-04 15:30:43,828 | INFO     | . payload execution = 7345 s
[2025-06-04 11:30:59] 2025-06-04 15:30:43,828 | INFO     | . stage-out = 1 s
[2025-06-04 11:30:59] 2025-06-04 15:30:43,828 | INFO     | . log creation = 0 s
[2025-06-04 11:30:59] 2025-06-04 15:30:43,828 | INFO     | ..............................
[2025-06-04 11:30:59] 2025-06-04 15:30:43,908 | INFO     | 
[2025-06-04 11:30:59] 2025-06-04 15:30:43,909 | INFO     | job summary report
[2025-06-04 11:30:59] 2025-06-04 15:30:43,909 | INFO     | --------------------------------------------------
[2025-06-04 11:30:59] 2025-06-04 15:30:43,909 | INFO     | PanDA job id: 6679368702
[2025-06-04 11:30:59] 2025-06-04 15:30:43,909 | INFO     | task id: 45006595
[2025-06-04 11:30:59] 2025-06-04 15:30:43,909 | INFO     | errors: (none)
[2025-06-04 11:30:59] 2025-06-04 15:30:43,909 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 11:30:59] 2025-06-04 15:30:43,909 | INFO     | pilot state: finished 
[2025-06-04 11:30:59] 2025-06-04 15:30:43,909 | INFO     | transexitcode: 0
[2025-06-04 11:30:59] 2025-06-04 15:30:43,909 | INFO     | exeerrorcode: 0
[2025-06-04 11:30:59] 2025-06-04 15:30:43,909 | INFO     | exeerrordiag: 
[2025-06-04 11:30:59] 2025-06-04 15:30:43,909 | INFO     | exitcode: 0
[2025-06-04 11:30:59] 2025-06-04 15:30:43,909 | INFO     | exitmsg: OK
[2025-06-04 11:30:59] 2025-06-04 15:30:43,910 | INFO     | cpuconsumptiontime: 30347 s
[2025-06-04 11:30:59] 2025-06-04 15:30:43,910 | INFO     | nevents: 400
[2025-06-04 11:30:59] 2025-06-04 15:30:43,910 | INFO     | neventsw: 0
[2025-06-04 11:30:59] 2025-06-04 15:30:43,910 | INFO     | pid: 12020
[2025-06-04 11:30:59] 2025-06-04 15:30:43,910 | INFO     | pgrp: 12020
[2025-06-04 11:30:59] 2025-06-04 15:30:43,910 | INFO     | corecount: 8
[2025-06-04 11:30:59] 2025-06-04 15:30:43,910 | INFO     | event service: False
[2025-06-04 11:30:59] 2025-06-04 15:30:43,910 | INFO     | sizes: {0: 2397235, 11: 2397235, 22: 2397263, 29: 2397497, 32: 2397525, 7401: 2424834, 7405: 2433775, 7406: 2433831, 7440: 2434001}
[2025-06-04 11:30:59] 2025-06-04 15:30:43,910 | INFO     | --------------------------------------------------
[2025-06-04 11:30:59] 2025-06-04 15:30:43,910 | INFO     | 
[2025-06-04 11:30:59] 2025-06-04 15:30:43,910 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-06-04 11:30:59] 2025-06-04 15:30:44,094 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 11:30:59] 2025-06-04 15:30:44,094 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 11:30:59] 2025-06-04 15:30:44,094 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 11:30:59] 2025-06-04 15:30:44,094 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 11:30:59] 2025-06-04 15:30:44,094 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 11:30:59] 2025-06-04 15:30:44,094 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 11:30:59] 2025-06-04 15:30:44,095 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 11:30:59] 2025-06-04 15:30:44,095 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 11:30:59] 2025-06-04 15:30:44,095 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 11:30:59] 2025-06-04 15:30:44,095 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 11:30:59] 2025-06-04 15:30:44,095 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 11:30:59] 2025-06-04 15:30:44,095 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 11:30:59] 2025-06-04 15:30:44,095 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 11:30:59] 2025-06-04 15:30:44,095 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 11:30:59] 2025-06-04 15:30:44,095 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 11:30:59] 2025-06-04 15:30:44,095 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 11:30:59] 2025-06-04 15:30:44,095 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 11:30:59] 2025-06-04 15:30:44,095 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 11:30:59] 2025-06-04 15:30:44,095 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 11:30:59] 2025-06-04 15:30:44,095 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 11:30:59] 2025-06-04 15:30:44,095 | INFO     | job 6679368702 has completed (purged errors)
[2025-06-04 11:30:59] 2025-06-04 15:30:44,095 | INFO     | overall cleanup function is called
[2025-06-04 11:30:59] 2025-06-04 15:30:45,104 | INFO     | --- collectZombieJob: --- 10, [12020]
[2025-06-04 11:30:59] 2025-06-04 15:30:45,104 | INFO     | zombie collector waiting for pid 12020
[2025-06-04 11:30:59] 2025-06-04 15:30:45,104 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 11:30:59] 2025-06-04 15:30:45,104 | INFO     | collected zombie processes
[2025-06-04 11:30:59] 2025-06-04 15:30:45,104 | INFO     | will attempt to kill all subprocesses of pid=12020
[2025-06-04 11:30:59] 2025-06-04 15:30:45,301 | INFO     | process IDs to be killed: [12020] (in reverse order)
[2025-06-04 11:30:59] 2025-06-04 15:30:45,703 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 11:30:59] 2025-06-04 15:30:45,703 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 11:30:59] 2025-06-04 15:30:45,710 | INFO     | did not find any defunct processes belonging to 12020
[2025-06-04 11:30:59] 2025-06-04 15:30:45,715 | INFO     | did not find any defunct processes belonging to 12020
[2025-06-04 11:30:59] 2025-06-04 15:30:45,716 | INFO     | ready for new job
[2025-06-04 11:30:59] 2025-06-04 15:30:45,716 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 11:30:59] 2025-06-04 15:30:45,717 | INFO     | **************************************
[2025-06-04 11:30:59] 2025-06-04 15:30:45,717 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 11:30:59] 2025-06-04 15:30:45,717 | INFO     | **************************************
[2025-06-04 11:30:59] 2025-06-04 15:30:45,717 | INFO     | 
[2025-06-04 11:30:59] 2025-06-04 15:30:45,720 | INFO     | architecture information:
[2025-06-04 11:30:59] 2025-06-04 15:30:45,720 | INFO     | executing command: cat /etc/os-release
[2025-06-04 11:30:59] 2025-06-04 15:30:45,837 | INFO     | cat /etc/os-release:
[2025-06-04 11:30:59] NAME="CentOS Linux"
[2025-06-04 11:30:59] VERSION="7 (Core)"
[2025-06-04 11:30:59] ID="centos"
[2025-06-04 11:30:59] ID_LIKE="rhel fedora"
[2025-06-04 11:30:59] VERSION_ID="7"
[2025-06-04 11:30:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 11:30:59] ANSI_COLOR="0;31"
[2025-06-04 11:30:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 11:30:59] HOME_URL="https://www.centos.org/"
[2025-06-04 11:30:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 11:30:59] 
[2025-06-04 11:30:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 11:30:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 11:30:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 11:30:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 11:30:59] 
[2025-06-04 11:30:59] 2025-06-04 15:30:45,837 | INFO     | **************************************
[2025-06-04 11:30:59] 2025-06-04 15:30:46,341 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-06-04 11:30:59] 2025-06-04 15:30:46,448 | INFO     | sufficient remaining disk space (75513200640 B)
[2025-06-04 11:30:59] 2025-06-04 15:30:46,449 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 11:30:59] 2025-06-04 15:30:46,449 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 11:30:59] 2025-06-04 15:30:46,449 | INFO     | update_server=False
[2025-06-04 11:30:59] 2025-06-04 15:30:46,449 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 11:30:59] 2025-06-04 15:30:46,449 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 11:30:59] 2025-06-04 15:30:46,450 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 11:30:59] 2025-06-04 15:30:46,450 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 11:30:59] 2025-06-04 15:30:46,450 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 11:30:59] 2025-06-04 15:30:46,876 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 11:30:59] 2025-06-04 15:30:46,952 | INFO     | all payload control threads have been joined
[2025-06-04 11:30:59] 2025-06-04 15:30:47,134 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:30:59] 2025-06-04 15:30:47,134 | INFO     | aborting loop
[2025-06-04 11:30:59] 2025-06-04 15:30:47,383 | INFO     | all job control threads have been joined
[2025-06-04 11:30:59] 2025-06-04 15:30:47,455 | INFO     | [job] retrieve thread has finished
[2025-06-04 11:30:59] 2025-06-04 15:30:47,456 | INFO     | all data control threads have been joined
[2025-06-04 11:30:59] 2025-06-04 15:30:47,638 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 11:30:59] 2025-06-04 15:30:47,959 | INFO     | [payload] control thread has finished
[2025-06-04 11:30:59] 2025-06-04 15:30:48,038 | INFO     | [job] validate thread has finished
[2025-06-04 11:30:59] 2025-06-04 15:30:48,064 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 11:30:59] 2025-06-04 15:30:48,140 | INFO     | [job] job monitor thread has finished
[2025-06-04 11:30:59] 2025-06-04 15:30:48,151 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 11:30:59] 2025-06-04 15:30:48,332 | INFO     | [payload] validate_post thread has finished
[2025-06-04 11:30:59] 2025-06-04 15:30:48,388 | INFO     | [job] control thread has finished
[2025-06-04 11:30:59] 2025-06-04 15:30:48,462 | INFO     | [payload] failed_post thread has finished
[2025-06-04 11:30:59] 2025-06-04 15:30:48,462 | INFO     | [data] control thread has finished
[2025-06-04 11:30:59] 2025-06-04 15:30:48,663 | INFO     | [data] copytool_in thread has finished
[2025-06-04 11:30:59] 2025-06-04 15:30:48,729 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 11:30:59] 2025-06-04 15:30:48,849 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 11:30:59] 2025-06-04 15:30:48,883 | INFO     | [data] copytool_out thread has finished
[2025-06-04 11:30:59] 2025-06-04 15:30:48,921 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:30:59] 2025-06-04 15:30:49,926 | INFO     | [job] queue monitor thread has finished
[2025-06-04 11:30:59] 2025-06-04 15:30:51,644 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 11:30:59] 2025-06-04 15:30:52,790 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140485174609728)>', '<ExcThread(monitor, started 140484731193088)>']
[2025-06-04 11:30:59] 2025-06-04 15:30:53,510 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 11:30:59] 2025-06-04 15:30:53,510 | INFO     | [monitor] control thread has ended
[2025-06-04 11:30:59] 2025-06-04 15:30:57,812 | INFO     | all workflow threads have been joined
[2025-06-04 11:30:59] 2025-06-04 15:30:57,812 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 11:30:59] 2025-06-04 15:30:57,813 | INFO     | traces error code: 0
[2025-06-04 11:30:59] 2025-06-04 15:30:57,813 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 11:30:59] 2025-06-04 15:30:57,910 [wrapper] ==== pilot stdout END ====
[2025-06-04 11:30:59] 2025-06-04 15:30:57,961 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 11:30:59] 2025-06-04 15:30:57,997 [wrapper] pilotpid: 5070
[2025-06-04 11:30:59] 2025-06-04 15:30:58,038 [wrapper] Pilot exit status: 0
[2025-06-04 11:30:59] 2025-06-04 15:30:58,206 [wrapper] pandaids: 6679368702
[2025-06-04 11:30:59] 2025-06-04 15:30:58,359 [wrapper] cleanup supervisor_pilot 54611 5071
[2025-06-04 11:30:59] 2025-06-04 15:30:58,395 [wrapper] Test setup, not cleaning
[2025-06-04 11:30:59] 2025-06-04 15:30:58,417 [wrapper] apfmon messages muted
[2025-06-04 11:30:59] 2025-06-04 15:30:58,442 [wrapper] ==== wrapper stdout END ====
[2025-06-04 11:30:59] 2025-06-04 15:30:58,475 [wrapper] ==== wrapper stderr END ====
[2025-06-04 11:30:59]  *** Error codes and diagnostics ***
[2025-06-04 11:30:59]     "exeErrorCode": 0,
[2025-06-04 11:30:59]     "exeErrorDiag": "",
[2025-06-04 11:30:59]     "pilotErrorCode": 0,
[2025-06-04 11:30:59]     "pilotErrorDiag": "",
[2025-06-04 11:30:59]  *** Listing of results directory ***
[2025-06-04 11:30:59] total 393008
[2025-06-04 11:30:59] -rw-r--r-- 1 boincer umatlas    495897 Jun  4 04:46 pilot3.tar.gz
[2025-06-04 11:30:59] -rw-r--r-- 1 boincer umatlas      5111 Jun  4 04:58 queuedata.json
[2025-06-04 11:30:59] -rwx------ 1 boincer umatlas     37140 Jun  4 05:00 runpilot2-wrapper.sh
[2025-06-04 11:30:59] -rw-r--r-- 1 boincer umatlas       100 Jun  4 09:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 11:30:59] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 09:24 run_atlas
[2025-06-04 11:30:59] -rw-r--r-- 1 boincer umatlas       105 Jun  4 09:24 job.xml
[2025-06-04 11:30:59] -rw-r--r-- 2 boincer umatlas 216831420 Jun  4 09:24 EVNT.45006593._000109.pool.root.1
[2025-06-04 11:30:59] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 09:24 start_atlas.sh
[2025-06-04 11:30:59] drwxrwx--x 2 boincer umatlas      4096 Jun  4 09:24 shared
[2025-06-04 11:30:59] -rw-r--r-- 2 boincer umatlas    508882 Jun  4 09:24 input.tar.gz
[2025-06-04 11:30:59] -rw-r--r-- 1 boincer umatlas         0 Jun  4 09:24 boinc_lockfile
[2025-06-04 11:30:59] -rw-r--r-- 1 boincer umatlas      2521 Jun  4 09:24 pandaJob.out
[2025-06-04 11:30:59] -rw------- 1 boincer umatlas    986819 Jun  4 09:25 agis_schedconf.cvmfs.json
[2025-06-04 11:30:59] -rw------- 1 boincer umatlas   1598969 Jun  4 09:25 agis_ddmendpoints.agis.ALL.json
[2025-06-04 11:30:59] drwx------ 4 boincer umatlas      4096 Jun  4 09:25 pilot3
[2025-06-04 11:30:59] -rw-r--r-- 1 boincer umatlas      6252 Jun  4 11:28 init_data.xml
[2025-06-04 11:30:59] -rw------- 1 boincer umatlas 179707447 Jun  4 11:29 HITS.45006595._056219.pool.root.1
[2025-06-04 11:30:59] -rw-r--r-- 1 boincer umatlas       530 Jun  4 11:29 boinc_task_state.xml
[2025-06-04 11:30:59] -rw------- 1 boincer umatlas        95 Jun  4 11:30 pilot_heartbeat.json
[2025-06-04 11:30:59] -rw------- 1 boincer umatlas      1063 Jun  4 11:30 memory_monitor_summary.json
[2025-06-04 11:30:59] -rw------- 1 boincer umatlas    339121 Jun  4 11:30 log.45006595._056219.job.log.tgz.1
[2025-06-04 11:30:59] -rw------- 1 boincer umatlas      7731 Jun  4 11:30 heartbeat.json
[2025-06-04 11:30:59] -rw------- 1 boincer umatlas      4476 Jun  4 11:30 pilotlog.txt
[2025-06-04 11:30:59] -rw------- 1 boincer umatlas    700116 Jun  4 11:30 log.45006595._056219.job.log.1
[2025-06-04 11:30:59] -rw-r--r-- 1 boincer umatlas        27 Jun  4 11:30 wrapper_checkpoint.txt
[2025-06-04 11:30:59] -rw------- 1 boincer umatlas       357 Jun  4 11:30 output.list
[2025-06-04 11:30:59] -rw-r--r-- 1 boincer umatlas       620 Jun  4 11:30 runtime_log
[2025-06-04 11:30:59] -rw------- 1 boincer umatlas   1054720 Jun  4 11:30 result.tar.gz
[2025-06-04 11:30:59] -rw-r--r-- 1 boincer umatlas      8659 Jun  4 11:30 runtime_log.err
[2025-06-04 11:30:59] -rw------- 1 boincer umatlas       656 Jun  4 11:30 rdnMDm89yg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmPunKDmOtsO2n.diag
[2025-06-04 11:30:59] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 11:30 boinc_mmap_file
[2025-06-04 11:30:59] -rw-r--r-- 1 boincer umatlas     20913 Jun  4 11:30 stderr.txt
[2025-06-04 11:30:59] HITS file was successfully produced:
[2025-06-04 11:30:59] -rw------- 1 boincer umatlas 179707447 Jun  4 11:29 shared/HITS.pool.root.1
[2025-06-04 11:30:59]  *** Contents of shared directory: ***
[2025-06-04 11:30:59] total 388800
[2025-06-04 11:30:59] -rw-r--r-- 2 boincer umatlas 216831420 Jun  4 09:24 ATLAS.root_0
[2025-06-04 11:30:59] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 09:24 start_atlas.sh
[2025-06-04 11:30:59] -rw-r--r-- 2 boincer umatlas    508882 Jun  4 09:24 input.tar.gz
[2025-06-04 11:30:59] -rw------- 1 boincer umatlas 179707447 Jun  4 11:29 HITS.pool.root.1
[2025-06-04 11:30:59] -rw------- 1 boincer umatlas   1054720 Jun  4 11:30 result.tar.gz
11:31:00 (821): run_atlas exited; CPU time 29901.064532
11:31:00 (821): called boinc_finish(0)

</stderr_txt>
]]>

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