Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
17:26:22 (301590): wrapper (7.7.26015): starting
17:26:22 (301590): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 17:26:22] Arguments: --nthreads 4
[2025-06-05 17:26:22] Threads: 4
[2025-06-05 17:26:22] Checking for CVMFS
[2025-06-05 17:26:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 17:26:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 17:26:22] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 17:26:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 17:26:22] 2.12.7.0 412895 4103 54252 146824 3 56 4669212 6144000 2751 130560 0 11723883 99.9973 993154 9858 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.46:3128 1
[2025-06-05 17:26:22] CVMFS is ok
[2025-06-05 17:26:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 17:26:22] Checking for apptainer binary...
[2025-06-05 17:26:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 17:26:22] Running /usr/bin/apptainer --version
[2025-06-05 17:26:22] apptainer version 1.4.0
[2025-06-05 17:26:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 17:26:22] Ryzen5
[2025-06-05 17:26:22] apptainer works
[2025-06-05 17:26:22] Set ATHENA_PROC_NUMBER=4
[2025-06-05 17:26:22] Set ATHENA_CORE_NUMBER=4
[2025-06-05 17:26:22] Starting ATLAS job with PandaID=6679100193
[2025-06-05 17:26:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc3/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 18:42:48]  *** The last 200 lines of the pilot log: ***
[2025-06-05 18:42:48]  direct_access_lan=False
[2025-06-05 18:42:48]  direct_access_wan=False
[2025-06-05 18:42:48]  domain=
[2025-06-05 18:42:48]  filesize=236500
[2025-06-05 18:42:48]  filetype=log
[2025-06-05 18:42:48]  guid=ff6ea91f-80e2-4cdf-afe6-40ca2f72b10c
[2025-06-05 18:42:48]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-05 18:42:48]  is_altstaged=None
[2025-06-05 18:42:48]  is_tar=False
[2025-06-05 18:42:48]  lfn=log.45006595._055829.job.log.tgz.1
[2025-06-05 18:42:48]  mtime=0
[2025-06-05 18:42:48]  protocol_id=None
[2025-06-05 18:42:48]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-05 18:42:48]  replicas=None
[2025-06-05 18:42:48]  scope=mc23_13p6TeV
[2025-06-05 18:42:48]  status=None
[2025-06-05 18:42:48]  status_code=0
[2025-06-05 18:42:48]  storage_token=
[2025-06-05 18:42:48]  surl=/var/lib/boinc3/slots/0/PanDA_Pilot-6679100193/log.45006595._055829.job.log.tgz.1
[2025-06-05 18:42:48]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/da/d8/log.45006595._055829.job.log.tgz.1
[2025-06-05 18:42:48]  workdir=None
[2025-06-05 18:42:48] ]
[2025-06-05 18:42:48] 2025-06-05 16:42:31,359 | INFO     | transferring file log.45006595._055829.job.log.tgz.1 from /var/lib/boinc3/slots/0/PanDA_Pilot-6679100193/log.45006595._055829.job.log.tgz.1 to /var/lib/boinc3/slot
[2025-06-05 18:42:48] 2025-06-05 16:42:31,359 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc3/slots/0/PanDA_Pilot-6679100193/log.45006595._055829.job.log.tgz.1 /var/lib/boinc3/slots/0/log.45006595._055829.j
[2025-06-05 18:42:48] 2025-06-05 16:42:31,371 | INFO     | adding to output.list: log.45006595._055829.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/da/d8/log.45006595._055829.job.log.tg
[2025-06-05 18:42:48] 2025-06-05 16:42:31,372 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 18:42:48] 2025-06-05 16:42:31,372 | INFO     | summary of transferred files:
[2025-06-05 18:42:48] 2025-06-05 16:42:31,372 | INFO     |  -- lfn=log.45006595._055829.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 18:42:48] 2025-06-05 16:42:31,372 | INFO     | stage-out finished correctly
[2025-06-05 18:42:48] 2025-06-05 16:42:31,437 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 18:42:48] 2025-06-05 16:42:31,712 | INFO     | job 6679100193 has state=finished
[2025-06-05 18:42:48] 2025-06-05 16:42:31,713 | INFO     | preparing for final server update for job 6679100193 in state='finished'
[2025-06-05 18:42:48] 2025-06-05 16:42:31,713 | INFO     | this job has now completed (state=finished)
[2025-06-05 18:42:48] 2025-06-05 16:42:31,713 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 18:42:48] 2025-06-05 16:42:31,713 | INFO     | log transfer has been attempted: DONE
[2025-06-05 18:42:48] 2025-06-05 16:42:31,713 | INFO     | job 6679100193 has finished - writing final server update
[2025-06-05 18:42:48] 2025-06-05 16:42:31,713 | INFO     | total number of processed events: 400 (read)
[2025-06-05 18:42:48] 2025-06-05 16:42:31,714 | INFO     | executing command: lscpu
[2025-06-05 18:42:48] 2025-06-05 16:42:31,733 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 18:42:48] 2025-06-05 16:42:33,439 | INFO     | monitor loop #351: job 0:6679100193 is in state 'finished'
[2025-06-05 18:42:48] 2025-06-05 16:42:33,439 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 18:42:48] 2025-06-05 16:42:35,522 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 18:42:48] 2025-06-05 16:42:35,522 | INFO     | using path: /var/lib/boinc3/slots/0/PanDA_Pilot-6679100193/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 18:42:48] 2025-06-05 16:42:35,523 | INFO     | extracted standard info from prmon json
[2025-06-05 18:42:48] 2025-06-05 16:42:35,523 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 18:42:48] 2025-06-05 16:42:35,523 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 18:42:48] 2025-06-05 16:42:35,523 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 18:42:48] 2025-06-05 16:42:35,523 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 18:42:48] 2025-06-05 16:42:35,525 | INFO     | fitting pss+swap vs Time
[2025-06-05 18:42:48] 2025-06-05 16:42:35,525 | INFO     | sum of square deviations: 97479037.0
[2025-06-05 18:42:48] 2025-06-05 16:42:35,525 | INFO     | sum of deviations: -7412835869.5
[2025-06-05 18:42:48] 2025-06-05 16:42:35,525 | INFO     | mean x: 1749139557.5
[2025-06-05 18:42:48] 2025-06-05 16:42:35,525 | INFO     | mean y: 2419468.367647059
[2025-06-05 18:42:48] 2025-06-05 16:42:35,525 | INFO     | -- intersect: 133016499742.85126
[2025-06-05 18:42:48] 2025-06-05 16:42:35,525 | INFO     | intersect: 133016499742.85126
[2025-06-05 18:42:48] 2025-06-05 16:42:35,526 | INFO     | chi2: 0.10389633477153663
[2025-06-05 18:42:48] 2025-06-05 16:42:35,526 | INFO     | -- intersect: 133016499742.85126
[2025-06-05 18:42:48] 2025-06-05 16:42:35,526 | INFO     | current memory leak: -76.05 B/s (using 68 data points, chi2=0.10)
[2025-06-05 18:42:48] 2025-06-05 16:42:35,526 | INFO     | ..............................
[2025-06-05 18:42:48] 2025-06-05 16:42:35,526 | INFO     | . Timing measurements:
[2025-06-05 18:42:48] 2025-06-05 16:42:35,526 | INFO     | . get job = 0 s
[2025-06-05 18:42:48] 2025-06-05 16:42:35,526 | INFO     | . initial setup = 1 s
[2025-06-05 18:42:48] 2025-06-05 16:42:35,526 | INFO     | . payload setup = 4 s
[2025-06-05 18:42:48] 2025-06-05 16:42:35,526 | INFO     | . stage-in = 0 s
[2025-06-05 18:42:48] 2025-06-05 16:42:35,526 | INFO     | . payload execution = 4539 s
[2025-06-05 18:42:48] 2025-06-05 16:42:35,526 | INFO     | . stage-out = 0 s
[2025-06-05 18:42:48] 2025-06-05 16:42:35,526 | INFO     | . log creation = 0 s
[2025-06-05 18:42:48] 2025-06-05 16:42:35,526 | INFO     | ..............................
[2025-06-05 18:42:48] 2025-06-05 16:42:35,593 | INFO     | 
[2025-06-05 18:42:48] 2025-06-05 16:42:35,593 | INFO     | job summary report
[2025-06-05 18:42:48] 2025-06-05 16:42:35,593 | INFO     | --------------------------------------------------
[2025-06-05 18:42:48] 2025-06-05 16:42:35,593 | INFO     | PanDA job id: 6679100193
[2025-06-05 18:42:48] 2025-06-05 16:42:35,594 | INFO     | task id: 45006595
[2025-06-05 18:42:48] 2025-06-05 16:42:35,594 | INFO     | errors: (none)
[2025-06-05 18:42:48] 2025-06-05 16:42:35,594 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 18:42:48] 2025-06-05 16:42:35,594 | INFO     | pilot state: finished 
[2025-06-05 18:42:48] 2025-06-05 16:42:35,594 | INFO     | transexitcode: 0
[2025-06-05 18:42:48] 2025-06-05 16:42:35,594 | INFO     | exeerrorcode: 0
[2025-06-05 18:42:48] 2025-06-05 16:42:35,594 | INFO     | exeerrordiag: 
[2025-06-05 18:42:48] 2025-06-05 16:42:35,594 | INFO     | exitcode: 0
[2025-06-05 18:42:48] 2025-06-05 16:42:35,594 | INFO     | exitmsg: OK
[2025-06-05 18:42:48] 2025-06-05 16:42:35,594 | INFO     | cpuconsumptiontime: 17348 s
[2025-06-05 18:42:48] 2025-06-05 16:42:35,594 | INFO     | nevents: 400
[2025-06-05 18:42:48] 2025-06-05 16:42:35,594 | INFO     | neventsw: 0
[2025-06-05 18:42:48] 2025-06-05 16:42:35,594 | INFO     | pid: 313896
[2025-06-05 18:42:48] 2025-06-05 16:42:35,594 | INFO     | pgrp: 313896
[2025-06-05 18:42:48] 2025-06-05 16:42:35,594 | INFO     | corecount: 4
[2025-06-05 18:42:48] 2025-06-05 16:42:35,594 | INFO     | event service: False
[2025-06-05 18:42:48] 2025-06-05 16:42:35,594 | INFO     | sizes: {0: 2397120, 1: 2397319, 3: 2397525, 11: 2397553, 4548: 2423673, 4550: 2432800, 4554: 2432914}
[2025-06-05 18:42:48] 2025-06-05 16:42:35,594 | INFO     | --------------------------------------------------
[2025-06-05 18:42:48] 2025-06-05 16:42:35,594 | INFO     | 
[2025-06-05 18:42:48] 2025-06-05 16:42:35,595 | INFO     | executing command: ls -lF /var/lib/boinc3/slots/0
[2025-06-05 18:42:48] 2025-06-05 16:42:35,607 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 18:42:48] 2025-06-05 16:42:35,607 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 18:42:48] 2025-06-05 16:42:35,607 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 18:42:48] 2025-06-05 16:42:35,607 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 18:42:48] 2025-06-05 16:42:35,607 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 18:42:48] 2025-06-05 16:42:35,607 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 18:42:48] 2025-06-05 16:42:35,607 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 18:42:48] 2025-06-05 16:42:35,608 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 18:42:48] 2025-06-05 16:42:35,608 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 18:42:48] 2025-06-05 16:42:35,608 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 18:42:48] 2025-06-05 16:42:35,608 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 18:42:48] 2025-06-05 16:42:35,608 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 18:42:48] 2025-06-05 16:42:35,608 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 18:42:48] 2025-06-05 16:42:35,608 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 18:42:48] 2025-06-05 16:42:35,608 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 18:42:48] 2025-06-05 16:42:35,608 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 18:42:48] 2025-06-05 16:42:35,608 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 18:42:48] 2025-06-05 16:42:35,608 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 18:42:48] 2025-06-05 16:42:35,608 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 18:42:48] 2025-06-05 16:42:35,608 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 18:42:48] 2025-06-05 16:42:35,608 | INFO     | job 6679100193 has completed (purged errors)
[2025-06-05 18:42:48] 2025-06-05 16:42:35,608 | INFO     | overall cleanup function is called
[2025-06-05 18:42:48] 2025-06-05 16:42:36,612 | INFO     | --- collectZombieJob: --- 10, [313896]
[2025-06-05 18:42:48] 2025-06-05 16:42:36,612 | INFO     | zombie collector waiting for pid 313896
[2025-06-05 18:42:48] 2025-06-05 16:42:36,613 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 18:42:48] 2025-06-05 16:42:36,613 | INFO     | collected zombie processes
[2025-06-05 18:42:48] 2025-06-05 16:42:36,613 | INFO     | will attempt to kill all subprocesses of pid=313896
[2025-06-05 18:42:48] 2025-06-05 16:42:36,697 | INFO     | process IDs to be killed: [313896] (in reverse order)
[2025-06-05 18:42:48] 2025-06-05 16:42:36,730 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 18:42:48] 2025-06-05 16:42:36,730 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 18:42:48] 2025-06-05 16:42:36,733 | INFO     | did not find any defunct processes belonging to 313896
[2025-06-05 18:42:48] 2025-06-05 16:42:36,735 | INFO     | did not find any defunct processes belonging to 313896
[2025-06-05 18:42:48] 2025-06-05 16:42:36,735 | INFO     | ready for new job
[2025-06-05 18:42:48] 2025-06-05 16:42:36,735 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 18:42:48] 2025-06-05 16:42:36,736 | INFO     | **************************************
[2025-06-05 18:42:48] 2025-06-05 16:42:36,736 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 18:42:48] 2025-06-05 16:42:36,736 | INFO     | **************************************
[2025-06-05 18:42:48] 2025-06-05 16:42:36,736 | INFO     | 
[2025-06-05 18:42:48] 2025-06-05 16:42:36,737 | INFO     | architecture information:
[2025-06-05 18:42:48] 2025-06-05 16:42:36,737 | INFO     | executing command: cat /etc/os-release
[2025-06-05 18:42:48] 2025-06-05 16:42:36,745 | INFO     | cat /etc/os-release:
[2025-06-05 18:42:48] NAME="CentOS Linux"
[2025-06-05 18:42:48] VERSION="7 (Core)"
[2025-06-05 18:42:48] ID="centos"
[2025-06-05 18:42:48] ID_LIKE="rhel fedora"
[2025-06-05 18:42:48] VERSION_ID="7"
[2025-06-05 18:42:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 18:42:48] ANSI_COLOR="0;31"
[2025-06-05 18:42:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 18:42:48] HOME_URL="https://www.centos.org/"
[2025-06-05 18:42:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 18:42:48] 
[2025-06-05 18:42:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 18:42:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 18:42:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 18:42:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 18:42:48] 
[2025-06-05 18:42:48] 2025-06-05 16:42:36,745 | INFO     | **************************************
[2025-06-05 18:42:48] 2025-06-05 16:42:37,246 | INFO     | executing command: df -mP /var/lib/boinc3/slots/0
[2025-06-05 18:42:48] 2025-06-05 16:42:37,258 | INFO     | sufficient remaining disk space (230802063360 B)
[2025-06-05 18:42:48] 2025-06-05 16:42:37,258 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 18:42:48] 2025-06-05 16:42:37,258 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 18:42:48] 2025-06-05 16:42:37,258 | INFO     | update_server=False
[2025-06-05 18:42:48] 2025-06-05 16:42:37,258 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 18:42:48] 2025-06-05 16:42:37,258 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 18:42:48] 2025-06-05 16:42:37,258 | INFO     | aborting loop
[2025-06-05 18:42:48] 2025-06-05 16:42:37,258 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 18:42:48] 2025-06-05 16:42:37,258 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 18:42:48] 2025-06-05 16:42:37,505 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 18:42:48] 2025-06-05 16:42:37,509 | INFO     | all job control threads have been joined
[2025-06-05 18:42:48] 2025-06-05 16:42:38,082 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 18:42:48] 2025-06-05 16:42:38,083 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 18:42:48] 2025-06-05 16:42:38,083 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 18:42:48] 2025-06-05 16:42:38,212 | INFO     | all data control threads have been joined
[2025-06-05 18:42:48] 2025-06-05 16:42:38,263 | INFO     | [job] retrieve thread has finished
[2025-06-05 18:42:48] 2025-06-05 16:42:38,263 | INFO     | [job] job monitor thread has finished
[2025-06-05 18:42:48] 2025-06-05 16:42:38,264 | INFO     | [job] queue monitor thread has finished
[2025-06-05 18:42:48] 2025-06-05 16:42:38,515 | INFO     | [job] control thread has finished
[2025-06-05 18:42:48] 2025-06-05 16:42:38,584 | INFO     | [payload] validate_post thread has finished
[2025-06-05 18:42:48] 2025-06-05 16:42:38,673 | INFO     | all payload control threads have been joined
[2025-06-05 18:42:48] 2025-06-05 16:42:38,766 | INFO     | [data] copytool_in thread has finished
[2025-06-05 18:42:48] 2025-06-05 16:42:39,032 | INFO     | [job] validate thread has finished
[2025-06-05 18:42:48] 2025-06-05 16:42:39,072 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 18:42:48] 2025-06-05 16:42:39,216 | INFO     | [data] control thread has finished
[2025-06-05 18:42:48] 2025-06-05 16:42:39,262 | INFO     | [data] copytool_out thread has finished
[2025-06-05 18:42:48] 2025-06-05 16:42:39,445 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 18:42:48] 2025-06-05 16:42:39,462 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 18:42:48] 2025-06-05 16:42:39,661 | INFO     | [payload] failed_post thread has finished
[2025-06-05 18:42:48] 2025-06-05 16:42:39,676 | INFO     | [payload] control thread has finished
[2025-06-05 18:42:48] 2025-06-05 16:42:39,739 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 18:42:48] 2025-06-05 16:42:41,511 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 18:42:48] 2025-06-05 16:42:42,855 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 136404188624704)>', '<ExcThread(monitor, started 136403832780544)>']
[2025-06-05 18:42:48] 2025-06-05 16:42:43,106 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 18:42:48] 2025-06-05 16:42:43,106 | INFO     | [monitor] control thread has ended
[2025-06-05 18:42:48] 2025-06-05 16:42:47,880 | INFO     | all workflow threads have been joined
[2025-06-05 18:42:48] 2025-06-05 16:42:47,880 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 18:42:48] 2025-06-05 16:42:47,880 | INFO     | traces error code: 0
[2025-06-05 18:42:48] 2025-06-05 16:42:47,881 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 18:42:48] 2025-06-05 16:42:47,951 [wrapper] ==== pilot stdout END ====
[2025-06-05 18:42:48] 2025-06-05 16:42:47,953 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 18:42:48] 2025-06-05 16:42:47,954 [wrapper] pilotpid: 305272
[2025-06-05 18:42:48] 2025-06-05 16:42:47,956 [wrapper] Pilot exit status: 0
[2025-06-05 18:42:48] 2025-06-05 16:42:47,961 [wrapper] pandaids: 6679100193
[2025-06-05 18:42:48] 2025-06-05 16:42:47,984 [wrapper] cleanup supervisor_pilot  376788 305273
[2025-06-05 18:42:48] 2025-06-05 16:42:47,986 [wrapper] Test setup, not cleaning
[2025-06-05 18:42:48] 2025-06-05 16:42:47,987 [wrapper] apfmon messages muted
[2025-06-05 18:42:48] 2025-06-05 16:42:47,989 [wrapper] ==== wrapper stdout END ====
[2025-06-05 18:42:48] 2025-06-05 16:42:47,990 [wrapper] ==== wrapper stderr END ====
[2025-06-05 18:42:48]  *** Error codes and diagnostics ***
[2025-06-05 18:42:48]     "exeErrorCode": 0,
[2025-06-05 18:42:48]     "exeErrorDiag": "",
[2025-06-05 18:42:48]     "pilotErrorCode": 0,
[2025-06-05 18:42:48]     "pilotErrorDiag": "",
[2025-06-05 18:42:48]  *** Listing of results directory ***
[2025-06-05 18:42:48] insgesamt 389020
[2025-06-05 18:42:48] -rw-r--r-- 1 boinc boinc      5111  4. Jun 10:45 queuedata.json
[2025-06-05 18:42:48] -rwx------ 1 boinc boinc     37140  4. Jun 10:46 runpilot2-wrapper.sh
[2025-06-05 18:42:48] -rw-r--r-- 1 boinc boinc    495897  4. Jun 10:46 pilot3.tar.gz
[2025-06-05 18:42:48] -rw-r--r-- 1 boinc boinc       100  5. Jun 17:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 18:42:48] -rwxr-xr-x 1 boinc boinc      7986  5. Jun 17:26 run_atlas
[2025-06-05 18:42:48] -rw-r--r-- 1 boinc boinc       105  5. Jun 17:26 job.xml
[2025-06-05 18:42:48] -rw-r--r-- 2 boinc boinc     15093  5. Jun 17:26 start_atlas.sh
[2025-06-05 18:42:48] drwxrwx--x 2 boinc boinc      4096  5. Jun 17:26 shared
[2025-06-05 18:42:48] -rw-r--r-- 2 boinc boinc    508875  5. Jun 17:26 input.tar.gz
[2025-06-05 18:42:48] -rw-r--r-- 1 boinc boinc      6965  5. Jun 17:26 init_data.xml
[2025-06-05 18:42:48] -rw-r--r-- 2 boinc boinc 215906385  5. Jun 17:26 EVNT.45006593._000892.pool.root.1
[2025-06-05 18:42:48] -rw-r--r-- 1 boinc boinc         0  5. Jun 17:26 boinc_lockfile
[2025-06-05 18:42:48] -rw-r--r-- 1 boinc boinc      2524  5. Jun 17:26 pandaJob.out
[2025-06-05 18:42:48] -rw------- 1 boinc boinc    983229  5. Jun 17:26 agis_schedconf.cvmfs.json
[2025-06-05 18:42:48] -rw------- 1 boinc boinc   1598969  5. Jun 17:26 agis_ddmendpoints.agis.ALL.json
[2025-06-05 18:42:48] drwx------ 4 boinc boinc      4096  5. Jun 17:26 pilot3
[2025-06-05 18:42:48] -rw------- 1 boinc boinc        95  5. Jun 18:41 pilot_heartbeat.json
[2025-06-05 18:42:48] -rw-r--r-- 1 boinc boinc       529  5. Jun 18:42 boinc_task_state.xml
[2025-06-05 18:42:48] -rw------- 1 boinc boinc 177232235  5. Jun 18:42 HITS.45006595._055829.pool.root.1
[2025-06-05 18:42:48] -rw------- 1 boinc boinc      1013  5. Jun 18:42 memory_monitor_summary.json
[2025-06-05 18:42:48] -rw------- 1 boinc boinc    236500  5. Jun 18:42 log.45006595._055829.job.log.tgz.1
[2025-06-05 18:42:48] -rw-r--r-- 1 boinc boinc      8192  5. Jun 18:42 boinc_mmap_file
[2025-06-05 18:42:48] -rw-r--r-- 1 boinc boinc        27  5. Jun 18:42 wrapper_checkpoint.txt
[2025-06-05 18:42:48] -rw------- 1 boinc boinc      7654  5. Jun 18:42 heartbeat.json
[2025-06-05 18:42:48] -rw------- 1 boinc boinc      4355  5. Jun 18:42 pilotlog.txt
[2025-06-05 18:42:48] -rw------- 1 boinc boinc    458881  5. Jun 18:42 log.45006595._055829.job.log.1
[2025-06-05 18:42:48] -rw------- 1 boinc boinc       357  5. Jun 18:42 output.list
[2025-06-05 18:42:48] -rw-r--r-- 1 boinc boinc       620  5. Jun 18:42 runtime_log
[2025-06-05 18:42:48] -rw------- 1 boinc boinc    716800  5. Jun 18:42 result.tar.gz
[2025-06-05 18:42:48] -rw-r--r-- 1 boinc boinc      8628  5. Jun 18:42 runtime_log.err
[2025-06-05 18:42:48] -rw------- 1 boinc boinc       642  5. Jun 18:42 pQLMDmwwyg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFpnKDm4zu1Xn.diag
[2025-06-05 18:42:48] -rw-r--r-- 1 boinc boinc     20534  5. Jun 18:42 stderr.txt
[2025-06-05 18:42:48] HITS file was successfully produced:
[2025-06-05 18:42:48] -rw------- 1 boinc boinc 177232235  5. Jun 18:42 shared/HITS.pool.root.1
[2025-06-05 18:42:48]  *** Contents of shared directory: ***
[2025-06-05 18:42:48] insgesamt 385144
[2025-06-05 18:42:48] -rw-r--r-- 2 boinc boinc     15093  5. Jun 17:26 start_atlas.sh
[2025-06-05 18:42:48] -rw-r--r-- 2 boinc boinc    508875  5. Jun 17:26 input.tar.gz
[2025-06-05 18:42:48] -rw-r--r-- 2 boinc boinc 215906385  5. Jun 17:26 ATLAS.root_0
[2025-06-05 18:42:48] -rw------- 1 boinc boinc 177232235  5. Jun 18:42 HITS.pool.root.1
[2025-06-05 18:42:48] -rw------- 1 boinc boinc    716800  5. Jun 18:42 result.tar.gz
18:42:49 (301590): run_atlas exited; CPU time 17391.022030
18:42:49 (301590): called boinc_finish(0)

</stderr_txt>
]]>

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