Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:36:51 (4002701): wrapper (7.7.26015): starting
09:36:51 (4002701): wrapper: running run_atlas (--nthreads 4)
[2025-06-06 09:36:51] Arguments: --nthreads 4
[2025-06-06 09:36:51] Threads: 4
[2025-06-06 09:36:51] Checking for CVMFS
[2025-06-06 09:36:51] No cvmfs_config command found, will try listing directly
[2025-06-06 09:36:51] CVMFS is ok
[2025-06-06 09:36:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 09:36:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 09:36:51] Further information can be found at the LHC@home message board.
[2025-06-06 09:36:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 09:36:51] Checking for apptainer binary...
[2025-06-06 09:36:51] which: no apptainer in ((null))
[2025-06-06 09:36:51] apptainer is not installed, using version from CVMFS
[2025-06-06 09:36:51] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 09:36:52] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut09.grid.cesnet.cz
[2025-06-06 09:36:52] apptainer works
[2025-06-06 09:36:52] Set ATHENA_PROC_NUMBER=4
[2025-06-06 09:36:52] Set ATHENA_CORE_NUMBER=4
[2025-06-06 09:36:52] Starting ATLAS job with PandaID=6679402174
[2025-06-06 09:36:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 11:23:29]  *** The last 200 lines of the pilot log: ***
[2025-06-06 11:23:29]  is_tar=False
[2025-06-06 11:23:29]  lfn=log.45006595._056256.job.log.tgz.1
[2025-06-06 11:23:29]  mtime=0
[2025-06-06 11:23:29]  protocol_id=None
[2025-06-06 11:23:29]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 11:23:29]  replicas=None
[2025-06-06 11:23:29]  scope=mc23_13p6TeV
[2025-06-06 11:23:29]  status=None
[2025-06-06 11:23:29]  status_code=0
[2025-06-06 11:23:29]  storage_token=
[2025-06-06 11:23:29]  surl=/scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6679402174/log.45006595._056256.job.log.tgz.1
[2025-06-06 11:23:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/40/e3/log.45006595._056256.job.log.tgz.1
[2025-06-06 11:23:29]  workdir=None
[2025-06-06 11:23:29] ]
[2025-06-06 11:23:29] 2025-06-06 09:17:15,050 | INFO     | transferring file log.45006595._056256.job.log.tgz.1 from /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6679402174/log.45006595._056256.job.log.tgz.1 to /scratch/b
[2025-06-06 11:23:29] 2025-06-06 09:17:15,051 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6679402174/log.45006595._056256.job.log.tgz.1 /scratch/boinc/var/slot60/slots/0/lo
[2025-06-06 11:23:29] 2025-06-06 09:17:15,064 | INFO     | adding to output.list: log.45006595._056256.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/40/e3/log.45006595._056256.job.log.tg
[2025-06-06 11:23:29] 2025-06-06 09:17:15,065 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 11:23:29] 2025-06-06 09:17:15,065 | INFO     | summary of transferred files:
[2025-06-06 11:23:29] 2025-06-06 09:17:15,065 | INFO     |  -- lfn=log.45006595._056256.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 11:23:29] 2025-06-06 09:17:15,065 | INFO     | stage-out finished correctly
[2025-06-06 11:23:29] 2025-06-06 09:17:16,117 | INFO     | monitor loop #449: job 0:6679402174 is in state 'finished'
[2025-06-06 11:23:29] 2025-06-06 09:17:16,118 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 11:23:29] 2025-06-06 09:17:17,564 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 11:23:29] 2025-06-06 09:17:18,049 | INFO     | job 6679402174 has state=finished
[2025-06-06 11:23:29] 2025-06-06 09:17:18,050 | INFO     | preparing for final server update for job 6679402174 in state='finished'
[2025-06-06 11:23:29] 2025-06-06 09:17:18,050 | INFO     | this job has now completed (state=finished)
[2025-06-06 11:23:29] 2025-06-06 09:17:18,050 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 11:23:29] 2025-06-06 09:17:18,050 | INFO     | log transfer has been attempted: DONE
[2025-06-06 11:23:29] 2025-06-06 09:17:18,051 | INFO     | job 6679402174 has finished - writing final server update
[2025-06-06 11:23:29] 2025-06-06 09:17:18,051 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_4792/.job.ad'
[2025-06-06 11:23:29] 2025-06-06 09:17:18,051 | INFO     | total number of processed events: 400 (read)
[2025-06-06 11:23:29] 2025-06-06 09:17:18,055 | INFO     | executing command: lscpu
[2025-06-06 11:23:29] 2025-06-06 09:17:18,108 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 11:23:29] 2025-06-06 09:17:18,621 | INFO     | monitor loop #450: job 0:6679402174 is in state 'finished'
[2025-06-06 11:23:29] 2025-06-06 09:17:18,621 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 11:23:29] 2025-06-06 09:17:21,123 | INFO     | monitor loop #451: job 0:6679402174 is in state 'finished'
[2025-06-06 11:23:29] 2025-06-06 09:17:21,124 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 11:23:29] 2025-06-06 09:17:22,952 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-06 11:23:29] 2025-06-06 09:17:22,952 | INFO     | using path: /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6679402174/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 11:23:29] 2025-06-06 09:17:22,953 | INFO     | extracted standard info from prmon json
[2025-06-06 11:23:29] 2025-06-06 09:17:22,953 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 11:23:29] 2025-06-06 09:17:22,953 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 11:23:29] 2025-06-06 09:17:22,953 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 11:23:29] 2025-06-06 09:17:22,954 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 11:23:29] 2025-06-06 09:17:22,955 | INFO     | fitting pss+swap vs Time
[2025-06-06 11:23:29] 2025-06-06 09:17:22,955 | INFO     | sum of square deviations: 241429643.0
[2025-06-06 11:23:29] 2025-06-06 09:17:22,955 | INFO     | sum of deviations: -14896111794.000002
[2025-06-06 11:23:29] 2025-06-06 09:17:22,956 | INFO     | mean x: 1749198523.5
[2025-06-06 11:23:29] 2025-06-06 09:17:22,956 | INFO     | mean y: 2695480.4782608696
[2025-06-06 11:23:29] 2025-06-06 09:17:22,956 | INFO     | -- intersect: 107927540301.44226
[2025-06-06 11:23:29] 2025-06-06 09:17:22,956 | INFO     | intersect: 107927540301.44226
[2025-06-06 11:23:29] 2025-06-06 09:17:22,956 | INFO     | chi2: 0.05491911714799575
[2025-06-06 11:23:29] 2025-06-06 09:17:22,956 | INFO     | -- intersect: 107927540301.44226
[2025-06-06 11:23:29] 2025-06-06 09:17:22,956 | INFO     | current memory leak: -61.70 B/s (using 92 data points, chi2=0.05)
[2025-06-06 11:23:29] 2025-06-06 09:17:22,957 | INFO     | ..............................
[2025-06-06 11:23:29] 2025-06-06 09:17:22,957 | INFO     | . Timing measurements:
[2025-06-06 11:23:29] 2025-06-06 09:17:22,957 | INFO     | . get job = 0 s
[2025-06-06 11:23:29] 2025-06-06 09:17:22,957 | INFO     | . initial setup = 1 s
[2025-06-06 11:23:29] 2025-06-06 09:17:22,957 | INFO     | . payload setup = 5 s
[2025-06-06 11:23:29] 2025-06-06 09:17:22,957 | INFO     | . stage-in = 0 s
[2025-06-06 11:23:29] 2025-06-06 09:17:22,957 | INFO     | . payload execution = 5990 s
[2025-06-06 11:23:29] 2025-06-06 09:17:22,957 | INFO     | . stage-out = 0 s
[2025-06-06 11:23:29] 2025-06-06 09:17:22,957 | INFO     | . log creation = 0 s
[2025-06-06 11:23:29] 2025-06-06 09:17:22,957 | INFO     | ..............................
[2025-06-06 11:23:29] 2025-06-06 09:17:23,243 | INFO     | PID=4006457 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-06 11:23:29] 2025-06-06 09:17:23,243 | INFO     | .. there are 2 such processes running
[2025-06-06 11:23:29] 2025-06-06 09:17:23,331 | INFO     | 
[2025-06-06 11:23:29] 2025-06-06 09:17:23,331 | INFO     | job summary report
[2025-06-06 11:23:29] 2025-06-06 09:17:23,331 | INFO     | --------------------------------------------------
[2025-06-06 11:23:29] 2025-06-06 09:17:23,331 | INFO     | PanDA job id: 6679402174
[2025-06-06 11:23:29] 2025-06-06 09:17:23,331 | INFO     | task id: 45006595
[2025-06-06 11:23:29] 2025-06-06 09:17:23,331 | INFO     | errors: (none)
[2025-06-06 11:23:29] 2025-06-06 09:17:23,332 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 11:23:29] 2025-06-06 09:17:23,332 | INFO     | pilot state: finished 
[2025-06-06 11:23:29] 2025-06-06 09:17:23,332 | INFO     | transexitcode: 0
[2025-06-06 11:23:29] 2025-06-06 09:17:23,332 | INFO     | exeerrorcode: 0
[2025-06-06 11:23:29] 2025-06-06 09:17:23,332 | INFO     | exeerrordiag: 
[2025-06-06 11:23:29] 2025-06-06 09:17:23,332 | INFO     | exitcode: 0
[2025-06-06 11:23:29] 2025-06-06 09:17:23,332 | INFO     | exitmsg: OK
[2025-06-06 11:23:29] 2025-06-06 09:17:23,332 | INFO     | cpuconsumptiontime: 22846 s
[2025-06-06 11:23:29] 2025-06-06 09:17:23,332 | INFO     | nevents: 400
[2025-06-06 11:23:29] 2025-06-06 09:17:23,332 | INFO     | neventsw: 0
[2025-06-06 11:23:29] 2025-06-06 09:17:23,332 | INFO     | pid: 4013661
[2025-06-06 11:23:29] 2025-06-06 09:17:23,332 | INFO     | pgrp: 4013661
[2025-06-06 11:23:29] 2025-06-06 09:17:23,332 | INFO     | corecount: 4
[2025-06-06 11:23:29] 2025-06-06 09:17:23,332 | INFO     | event service: False
[2025-06-06 11:23:29] 2025-06-06 09:17:23,332 | INFO     | sizes: {0: 2397297, 4: 2397503, 11: 2397531, 6000: 2424257, 6001: 2433220, 6004: 2433276, 6009: 2433574}
[2025-06-06 11:23:29] 2025-06-06 09:17:23,332 | INFO     | --------------------------------------------------
[2025-06-06 11:23:29] 2025-06-06 09:17:23,332 | INFO     | 
[2025-06-06 11:23:29] 2025-06-06 09:17:23,332 | INFO     | executing command: ls -lF /scratch/boinc/var/slot60/slots/0
[2025-06-06 11:23:29] 2025-06-06 09:17:23,346 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 11:23:29] 2025-06-06 09:17:23,347 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 11:23:29] 2025-06-06 09:17:23,347 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 11:23:29] 2025-06-06 09:17:23,347 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 11:23:29] 2025-06-06 09:17:23,347 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 11:23:29] 2025-06-06 09:17:23,347 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 11:23:29] 2025-06-06 09:17:23,347 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 11:23:29] 2025-06-06 09:17:23,347 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 11:23:29] 2025-06-06 09:17:23,348 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 11:23:29] 2025-06-06 09:17:23,348 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 11:23:29] 2025-06-06 09:17:23,348 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 11:23:29] 2025-06-06 09:17:23,348 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 11:23:29] 2025-06-06 09:17:23,348 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 11:23:29] 2025-06-06 09:17:23,348 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 11:23:29] 2025-06-06 09:17:23,348 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 11:23:29] 2025-06-06 09:17:23,348 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 11:23:29] 2025-06-06 09:17:23,348 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 11:23:29] 2025-06-06 09:17:23,348 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 11:23:29] 2025-06-06 09:17:23,348 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 11:23:29] 2025-06-06 09:17:23,348 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 11:23:29] 2025-06-06 09:17:23,348 | INFO     | job 6679402174 has completed (purged errors)
[2025-06-06 11:23:29] 2025-06-06 09:17:23,348 | INFO     | overall cleanup function is called
[2025-06-06 11:23:29] 2025-06-06 09:17:24,355 | INFO     | --- collectZombieJob: --- 10, [4013661]
[2025-06-06 11:23:29] 2025-06-06 09:17:24,355 | INFO     | zombie collector waiting for pid 4013661
[2025-06-06 11:23:29] 2025-06-06 09:17:24,355 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 11:23:29] 2025-06-06 09:17:24,356 | INFO     | collected zombie processes
[2025-06-06 11:23:29] 2025-06-06 09:17:24,356 | INFO     | will attempt to kill all subprocesses of pid=4013661
[2025-06-06 11:23:29] 2025-06-06 09:17:24,536 | INFO     | process IDs to be killed: [4013661] (in reverse order)
[2025-06-06 11:23:29] 2025-06-06 09:17:24,625 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 11:23:29] 2025-06-06 09:17:24,625 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 11:23:29] 2025-06-06 09:17:24,633 | INFO     | did not find any defunct processes belonging to 4013661
[2025-06-06 11:23:29] 2025-06-06 09:17:24,640 | INFO     | did not find any defunct processes belonging to 4013661
[2025-06-06 11:23:29] 2025-06-06 09:17:24,640 | INFO     | ready for new job
[2025-06-06 11:23:29] 2025-06-06 09:17:24,640 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 11:23:29] 2025-06-06 09:17:24,641 | INFO     | **************************************
[2025-06-06 11:23:29] 2025-06-06 09:17:24,641 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 11:23:29] 2025-06-06 09:17:24,642 | INFO     | **************************************
[2025-06-06 11:23:29] 2025-06-06 09:17:24,642 | INFO     | 
[2025-06-06 11:23:29] 2025-06-06 09:17:24,644 | INFO     | architecture information:
[2025-06-06 11:23:29] 2025-06-06 09:17:24,645 | INFO     | executing command: cat /etc/os-release
[2025-06-06 11:23:29] 2025-06-06 09:17:24,654 | INFO     | cat /etc/os-release:
[2025-06-06 11:23:29] NAME="CentOS Linux"
[2025-06-06 11:23:29] VERSION="7 (Core)"
[2025-06-06 11:23:29] ID="centos"
[2025-06-06 11:23:29] ID_LIKE="rhel fedora"
[2025-06-06 11:23:29] VERSION_ID="7"
[2025-06-06 11:23:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 11:23:29] ANSI_COLOR="0;31"
[2025-06-06 11:23:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 11:23:29] HOME_URL="https://www.centos.org/"
[2025-06-06 11:23:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 11:23:29] 
[2025-06-06 11:23:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 11:23:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 11:23:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 11:23:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 11:23:29] 
[2025-06-06 11:23:29] 2025-06-06 09:17:24,654 | INFO     | **************************************
[2025-06-06 11:23:29] 2025-06-06 09:17:25,157 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/0
[2025-06-06 11:23:29] 2025-06-06 09:17:25,171 | INFO     | sufficient remaining disk space (674633875456 B)
[2025-06-06 11:23:29] 2025-06-06 09:17:25,171 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 11:23:29] 2025-06-06 09:17:25,171 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 11:23:29] 2025-06-06 09:17:25,171 | INFO     | update_server=False
[2025-06-06 11:23:29] 2025-06-06 09:17:25,171 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 11:23:29] 2025-06-06 09:17:25,171 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 11:23:29] 2025-06-06 09:17:25,172 | INFO     | aborting loop
[2025-06-06 11:23:29] 2025-06-06 09:17:25,248 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 11:23:29] 2025-06-06 09:17:25,248 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 11:23:29] 2025-06-06 09:17:25,248 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 11:23:29] 2025-06-06 09:17:25,644 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 11:23:29] 2025-06-06 09:17:25,646 | INFO     | all data control threads have been joined
[2025-06-06 11:23:29] 2025-06-06 09:17:25,790 | INFO     | all job control threads have been joined
[2025-06-06 11:23:29] 2025-06-06 09:17:26,176 | INFO     | [job] retrieve thread has finished
[2025-06-06 11:23:29] 2025-06-06 09:17:26,177 | INFO     | [job] job monitor thread has finished
[2025-06-06 11:23:29] 2025-06-06 09:17:26,311 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 11:23:29] 2025-06-06 09:17:26,453 | INFO     | all payload control threads have been joined
[2025-06-06 11:23:29] 2025-06-06 09:17:26,460 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 11:23:29] 2025-06-06 09:17:26,487 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 11:23:29] 2025-06-06 09:17:26,629 | INFO     | [data] copytool_in thread has finished
[2025-06-06 11:23:29] 2025-06-06 09:17:26,651 | INFO     | [data] control thread has finished
[2025-06-06 11:23:29] 2025-06-06 09:17:26,795 | INFO     | [job] control thread has finished
[2025-06-06 11:23:29] 2025-06-06 09:17:27,363 | INFO     | [payload] validate_post thread has finished
[2025-06-06 11:23:29] 2025-06-06 09:17:27,369 | INFO     | [job] validate thread has finished
[2025-06-06 11:23:29] 2025-06-06 09:17:27,382 | INFO     | [payload] failed_post thread has finished
[2025-06-06 11:23:29] 2025-06-06 09:17:27,457 | INFO     | [payload] control thread has finished
[2025-06-06 11:23:29] 2025-06-06 09:17:27,650 | INFO     | [data] copytool_out thread has finished
[2025-06-06 11:23:29] 2025-06-06 09:17:28,020 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 11:23:29] 2025-06-06 09:17:28,165 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 11:23:29] 2025-06-06 09:17:29,025 | INFO     | [job] queue monitor thread has finished
[2025-06-06 11:23:29] 2025-06-06 09:17:32,171 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 11:23:29] 2025-06-06 09:17:35,934 | INFO     | job.realtimelogging is not enabled
[2025-06-06 11:23:29] 2025-06-06 09:17:36,940 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 11:23:29] 2025-06-06 09:17:37,011 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22781018576704)>', '<ExcThread(monitor, started 22780779132672)>']
[2025-06-06 11:23:29] 2025-06-06 09:17:37,301 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 11:23:29] 2025-06-06 09:17:37,301 | INFO     | [monitor] control thread has ended
[2025-06-06 11:23:29] 2025-06-06 09:17:42,012 | INFO     | all workflow threads have been joined
[2025-06-06 11:23:29] 2025-06-06 09:17:42,012 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 11:23:29] 2025-06-06 09:17:42,013 | INFO     | traces error code: 0
[2025-06-06 11:23:29] 2025-06-06 09:17:42,013 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 11:23:29] 2025-06-06 09:17:42,138 [wrapper] ==== pilot stdout END ====
[2025-06-06 11:23:29] 2025-06-06 09:17:42,140 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 11:23:29] 2025-06-06 09:17:42,143 [wrapper] pilotpid: 4006457
[2025-06-06 11:23:29] 2025-06-06 09:17:42,145 [wrapper] Pilot exit status: 0
[2025-06-06 11:23:29] 2025-06-06 09:17:42,152 [wrapper] pandaids: 6679402174
[2025-06-06 11:23:29] 2025-06-06 09:17:42,199 [wrapper] cleanup supervisor_pilot 4110955 4006458
[2025-06-06 11:23:29] 2025-06-06 09:17:42,201 [wrapper] Test setup, not cleaning
[2025-06-06 11:23:29] 2025-06-06 09:17:42,203 [wrapper] apfmon messages muted
[2025-06-06 11:23:29] 2025-06-06 09:17:42,205 [wrapper] ==== wrapper stdout END ====
[2025-06-06 11:23:29] 2025-06-06 09:17:42,207 [wrapper] ==== wrapper stderr END ====
[2025-06-06 11:23:29]  *** Error codes and diagnostics ***
[2025-06-06 11:23:29]     "exeErrorCode": 0,
[2025-06-06 11:23:29]     "exeErrorDiag": "",
[2025-06-06 11:23:29]     "pilotErrorCode": 0,
[2025-06-06 11:23:29]     "pilotErrorDiag": "",
[2025-06-06 11:23:29]  *** Listing of results directory ***
[2025-06-06 11:23:29] total 388436
[2025-06-06 11:23:29] -rw-r--r-- 1 boinc boinc    495897 Jun  4 10:46 pilot3.tar.gz
[2025-06-06 11:23:29] -rwx------ 1 boinc boinc     37140 Jun  4 11:03 runpilot2-wrapper.sh
[2025-06-06 11:23:29] -rw-r--r-- 1 boinc boinc      5111 Jun  4 11:03 queuedata.json
[2025-06-06 11:23:29] -rw-r--r-- 1 boinc boinc       100 Jun  6 09:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 11:23:29] -rwxr-xr-x 1 boinc boinc      7986 Jun  6 09:36 run_atlas
[2025-06-06 11:23:29] -rw-r--r-- 1 boinc boinc       105 Jun  6 09:36 job.xml
[2025-06-06 11:23:29] -rw-r--r-- 1 boinc boinc      6632 Jun  6 09:36 init_data.xml
[2025-06-06 11:23:29] -rw-r--r-- 2 boinc boinc 212851477 Jun  6 09:36 EVNT.45006593._000113.pool.root.1
[2025-06-06 11:23:29] -rw-r--r-- 2 boinc boinc     15093 Jun  6 09:36 start_atlas.sh
[2025-06-06 11:23:29] drwxrwx--x 2 boinc boinc      4096 Jun  6 09:36 shared
[2025-06-06 11:23:29] -rw-r--r-- 2 boinc boinc    508877 Jun  6 09:36 input.tar.gz
[2025-06-06 11:23:29] -rw-r--r-- 1 boinc boinc         0 Jun  6 09:36 boinc_lockfile
[2025-06-06 11:23:29] -rw-r--r-- 1 boinc boinc      2522 Jun  6 09:36 pandaJob.out
[2025-06-06 11:23:29] -rw------- 1 boinc boinc    987967 Jun  6 09:36 agis_schedconf.cvmfs.json
[2025-06-06 11:23:29] -rw------- 1 boinc boinc   1598969 Jun  6 09:36 agis_ddmendpoints.agis.ALL.json
[2025-06-06 11:23:29] drwx------ 4 boinc boinc      4096 Jun  6 09:36 pilot3
[2025-06-06 11:23:29] -rw------- 1 boinc boinc        95 Jun  6 11:16 pilot_heartbeat.json
[2025-06-06 11:23:29] -rw------- 1 boinc boinc 179411240 Jun  6 11:16 HITS.45006595._056256.pool.root.1
[2025-06-06 11:23:29] -rw-r--r-- 1 boinc boinc       528 Jun  6 11:16 boinc_task_state.xml
[2025-06-06 11:23:29] -rw------- 1 boinc boinc      1033 Jun  6 11:17 memory_monitor_summary.json
[2025-06-06 11:23:29] -rw------- 1 boinc boinc    251526 Jun  6 11:17 log.45006595._056256.job.log.tgz.1
[2025-06-06 11:23:29] -rw------- 1 boinc boinc      7724 Jun  6 11:17 heartbeat.json
[2025-06-06 11:23:29] -rw------- 1 boinc boinc      4435 Jun  6 11:17 pilotlog.txt
[2025-06-06 11:23:29] -rw------- 1 boinc boinc    575334 Jun  6 11:17 log.45006595._056256.job.log.1
[2025-06-06 11:23:29] -rw------- 1 boinc boinc       357 Jun  6 11:17 output.list
[2025-06-06 11:23:29] -rw-r--r-- 1 boinc boinc       620 Jun  6 11:17 runtime_log
[2025-06-06 11:23:29] -rw------- 1 boinc boinc    849920 Jun  6 11:17 result.tar.gz
[2025-06-06 11:23:29] -rw-r--r-- 1 boinc boinc      9025 Jun  6 11:17 runtime_log.err
[2025-06-06 11:23:29] -rw------- 1 boinc boinc       660 Jun  6 11:17 RZzLDmdCzg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmO0aKDm9BGaqn.diag
[2025-06-06 11:23:29] -rw-r--r-- 1 boinc boinc        26 Jun  6 11:23 wrapper_checkpoint.txt
[2025-06-06 11:23:29] -rw-r--r-- 1 boinc boinc      8192 Jun  6 11:23 boinc_mmap_file
[2025-06-06 11:23:29] -rw-r--r-- 1 boinc boinc     21396 Jun  6 11:23 stderr.txt
[2025-06-06 11:23:29] HITS file was successfully produced:
[2025-06-06 11:23:29] -rw------- 1 boinc boinc 179411240 Jun  6 11:16 shared/HITS.pool.root.1
[2025-06-06 11:23:29]  *** Contents of shared directory: ***
[2025-06-06 11:23:29] total 384428
[2025-06-06 11:23:29] -rw-r--r-- 2 boinc boinc 212851477 Jun  6 09:36 ATLAS.root_0
[2025-06-06 11:23:29] -rw-r--r-- 2 boinc boinc     15093 Jun  6 09:36 start_atlas.sh
[2025-06-06 11:23:29] -rw-r--r-- 2 boinc boinc    508877 Jun  6 09:36 input.tar.gz
[2025-06-06 11:23:29] -rw------- 1 boinc boinc 179411240 Jun  6 11:16 HITS.pool.root.1
[2025-06-06 11:23:29] -rw------- 1 boinc boinc    849920 Jun  6 11:17 result.tar.gz
11:23:31 (4002701): run_atlas exited; CPU time 23005.182653
11:23:31 (4002701): called boinc_finish(0)

</stderr_txt>
]]>

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