Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
09:57:44 (3944270): wrapper (7.7.26015): starting
09:57:44 (3944270): wrapper: running run_atlas (--nthreads 4)
[2025-06-04 09:57:44] Arguments: --nthreads 4
[2025-06-04 09:57:44] Threads: 4
[2025-06-04 09:57:44] Checking for CVMFS
[2025-06-04 09:57:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 09:57:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 09:57:44] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 09:57:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 09:57:44] 2.12.6.0 2389267 2716 52152 146783 3 56 3917223 6144000 6454 130560 0 14128164 99.998 631523 4664 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://192.168.1.30:3128 1
[2025-06-04 09:57:44] CVMFS is ok
[2025-06-04 09:57:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 09:57:44] Checking for apptainer binary...
[2025-06-04 09:57:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 09:57:44] Running /usr/bin/apptainer --version
[2025-06-04 09:57:44] apptainer version 1.3.4
[2025-06-04 09:57:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 09:57:44] Starfish-Cruncher
[2025-06-04 09:57:44] apptainer works
[2025-06-04 09:57:44] Set ATHENA_PROC_NUMBER=4
[2025-06-04 09:57:44] Set ATHENA_CORE_NUMBER=4
[2025-06-04 09:57:44] Starting ATLAS job with PandaID=6679379290
[2025-06-04 09:57:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 11:54:18]  *** The last 200 lines of the pilot log: ***
[2025-06-04 11:54:18] 2025-06-04 16:54:05,362 | INFO     | mean y: 2324544.5596330273
[2025-06-04 11:54:18] 2025-06-04 16:54:05,363 | INFO     | -- intersect: 7382191526.520347
[2025-06-04 11:54:18] 2025-06-04 16:54:05,363 | INFO     | intersect: 7382191526.520347
[2025-06-04 11:54:18] 2025-06-04 16:54:05,363 | INFO     | chi2: 1.4151675613883852
[2025-06-04 11:54:18] 2025-06-04 16:54:05,363 | INFO     | current chi2=1.4151675613883852 (change=0.07908501861460404 %)
[2025-06-04 11:54:18] 2025-06-04 16:54:05,363 | INFO     | right removable region: 108
[2025-06-04 11:54:18] 2025-06-04 16:54:05,363 | INFO     | sum of square deviations: 401533110.0
[2025-06-04 11:54:18] 2025-06-04 16:54:05,363 | INFO     | sum of deviations: -11774425752.999998
[2025-06-04 11:54:18] 2025-06-04 16:54:05,364 | INFO     | mean x: 1749052697.0
[2025-06-04 11:54:18] 2025-06-04 16:54:05,364 | INFO     | mean y: 2349785.3211009176
[2025-06-04 11:54:18] 2025-06-04 16:54:05,364 | INFO     | -- intersect: 51290999727.316925
[2025-06-04 11:54:18] 2025-06-04 16:54:05,364 | INFO     | intersect: 51290999727.316925
[2025-06-04 11:54:18] 2025-06-04 16:54:05,364 | INFO     | chi2: 0.1588566978586916
[2025-06-04 11:54:18] 2025-06-04 16:54:05,364 | INFO     | current chi2=0.1588566978586916 (change=88.7835850438875 %)
[2025-06-04 11:54:18] 2025-06-04 16:54:05,364 | INFO     | sum of square deviations: 348769330.0
[2025-06-04 11:54:18] 2025-06-04 16:54:05,365 | INFO     | sum of deviations: -6240126515.999999
[2025-06-04 11:54:18] 2025-06-04 16:54:05,365 | INFO     | mean x: 1749052849.5
[2025-06-04 11:54:18] 2025-06-04 16:54:05,365 | INFO     | mean y: 2333767.153846154
[2025-06-04 11:54:18] 2025-06-04 16:54:05,365 | INFO     | -- intersect: 31296114857.510345
[2025-06-04 11:54:18] 2025-06-04 16:54:05,365 | INFO     | intersect: 31296114857.510345
[2025-06-04 11:54:18] 2025-06-04 16:54:05,365 | INFO     | chi2: 0.10199159951723313
[2025-06-04 11:54:18] 2025-06-04 16:54:05,365 | INFO     | current chi2=0.10199159951723313 (change=35.79647513008353 %)
[2025-06-04 11:54:18] 2025-06-04 16:54:05,365 | INFO     | sum of square deviations: 300842850.0
[2025-06-04 11:54:18] 2025-06-04 16:54:05,366 | INFO     | sum of deviations: -1259118446.0
[2025-06-04 11:54:18] 2025-06-04 16:54:05,366 | INFO     | mean x: 1749053002.0
[2025-06-04 11:54:18] 2025-06-04 16:54:05,366 | INFO     | mean y: 2317979.222222222
[2025-06-04 11:54:18] 2025-06-04 16:54:05,366 | INFO     | -- intersect: 7322634542.670132
[2025-06-04 11:54:18] 2025-06-04 16:54:05,366 | INFO     | intersect: 7322634542.670132
[2025-06-04 11:54:18] 2025-06-04 16:54:05,366 | INFO     | chi2: 0.026111980480182
[2025-06-04 11:54:18] 2025-06-04 16:54:05,366 | INFO     | current chi2=0.026111980480182 (change=74.39791060853992 %)
[2025-06-04 11:54:18] 2025-06-04 16:54:05,366 | INFO     | sum of square deviations: 257521107.5
[2025-06-04 11:54:18] 2025-06-04 16:54:05,367 | INFO     | sum of deviations: 909827291.5
[2025-06-04 11:54:18] 2025-06-04 16:54:05,367 | INFO     | mean x: 1749053154.5
[2025-06-04 11:54:18] 2025-06-04 16:54:05,367 | INFO     | mean y: 2310431.265957447
[2025-06-04 11:54:18] 2025-06-04 16:54:05,367 | INFO     | -- intersect: -6177129808.39776
[2025-06-04 11:54:18] 2025-06-04 16:54:05,367 | INFO     | intersect: -6177129808.39776
[2025-06-04 11:54:18] 2025-06-04 16:54:05,367 | INFO     | chi2: 0.00010963380907875134
[2025-06-04 11:54:18] 2025-06-04 16:54:05,367 | INFO     | current chi2=0.00010963380907875134 (change=99.58013981680955 %)
[2025-06-04 11:54:18] 2025-06-04 16:54:05,367 | INFO     | sum of square deviations: 218571540.0
[2025-06-04 11:54:18] 2025-06-04 16:54:05,367 | INFO     | sum of deviations: 720041377.0
[2025-06-04 11:54:18] 2025-06-04 16:54:05,367 | INFO     | mean x: 1749053307.0
[2025-06-04 11:54:18] 2025-06-04 16:54:05,368 | INFO     | mean y: 2311174.4606741574
[2025-06-04 11:54:18] 2025-06-04 16:54:05,368 | INFO     | -- intersect: -5759604359.5502205
[2025-06-04 11:54:18] 2025-06-04 16:54:05,368 | INFO     | intersect: -5759604359.5502205
[2025-06-04 11:54:18] 2025-06-04 16:54:05,368 | INFO     | chi2: 9.409560188001756e-05
[2025-06-04 11:54:18] 2025-06-04 16:54:05,368 | INFO     | current chi2=9.409560188001756e-05 (change=14.172824358927905 %)
[2025-06-04 11:54:18] 2025-06-04 16:54:05,368 | INFO     | left removable region: 50
[2025-06-04 11:54:18] 2025-06-04 16:54:05,368 | INFO     | sum of square deviations: 60482994.5
[2025-06-04 11:54:18] 2025-06-04 16:54:05,368 | INFO     | sum of deviations: 108879693.00000001
[2025-06-04 11:54:18] 2025-06-04 16:54:05,368 | INFO     | mean x: 1749053886.5
[2025-06-04 11:54:18] 2025-06-04 16:54:05,368 | INFO     | mean y: 2313298.7586206896
[2025-06-04 11:54:18] 2025-06-04 16:54:05,368 | INFO     | -- intersect: -3146281637.3366294
[2025-06-04 11:54:18] 2025-06-04 16:54:05,368 | INFO     | intersect: -3146281637.3366294
[2025-06-04 11:54:18] 2025-06-04 16:54:05,369 | INFO     | chi2: 3.6221206996167146e-05
[2025-06-04 11:54:18] 2025-06-04 16:54:05,369 | INFO     | -- intersect: -3146281637.3366294
[2025-06-04 11:54:18] 2025-06-04 16:54:05,369 | INFO     | current memory leak: 1.80 B/s (using 58 data points, chi2=0.00)
[2025-06-04 11:54:18] 2025-06-04 16:54:05,369 | INFO     | ..............................
[2025-06-04 11:54:18] 2025-06-04 16:54:05,369 | INFO     | . Timing measurements:
[2025-06-04 11:54:18] 2025-06-04 16:54:05,369 | INFO     | . get job = 0 s
[2025-06-04 11:54:18] 2025-06-04 16:54:05,369 | INFO     | . initial setup = 3 s
[2025-06-04 11:54:18] 2025-06-04 16:54:05,369 | INFO     | . payload setup = 5 s
[2025-06-04 11:54:18] 2025-06-04 16:54:05,369 | INFO     | . stage-in = 0 s
[2025-06-04 11:54:18] 2025-06-04 16:54:05,369 | INFO     | . payload execution = 6943 s
[2025-06-04 11:54:18] 2025-06-04 16:54:05,369 | INFO     | . stage-out = 0 s
[2025-06-04 11:54:18] 2025-06-04 16:54:05,370 | INFO     | . log creation = 0 s
[2025-06-04 11:54:18] 2025-06-04 16:54:05,370 | INFO     | ..............................
[2025-06-04 11:54:18] 2025-06-04 16:54:05,945 | INFO     | 
[2025-06-04 11:54:18] 2025-06-04 16:54:05,945 | INFO     | job summary report
[2025-06-04 11:54:18] 2025-06-04 16:54:05,945 | INFO     | --------------------------------------------------
[2025-06-04 11:54:18] 2025-06-04 16:54:05,945 | INFO     | PanDA job id: 6679379290
[2025-06-04 11:54:18] 2025-06-04 16:54:05,945 | INFO     | task id: 45006595
[2025-06-04 11:54:18] 2025-06-04 16:54:05,945 | INFO     | errors: (none)
[2025-06-04 11:54:18] 2025-06-04 16:54:05,945 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 11:54:18] 2025-06-04 16:54:05,945 | INFO     | pilot state: finished 
[2025-06-04 11:54:18] 2025-06-04 16:54:05,945 | INFO     | transexitcode: 0
[2025-06-04 11:54:18] 2025-06-04 16:54:05,946 | INFO     | exeerrorcode: 0
[2025-06-04 11:54:18] 2025-06-04 16:54:05,946 | INFO     | exeerrordiag: 
[2025-06-04 11:54:18] 2025-06-04 16:54:05,946 | INFO     | exitcode: 0
[2025-06-04 11:54:18] 2025-06-04 16:54:05,946 | INFO     | exitmsg: OK
[2025-06-04 11:54:18] 2025-06-04 16:54:05,946 | INFO     | cpuconsumptiontime: 26544 s
[2025-06-04 11:54:18] 2025-06-04 16:54:05,946 | INFO     | nevents: 400
[2025-06-04 11:54:18] 2025-06-04 16:54:05,946 | INFO     | neventsw: 0
[2025-06-04 11:54:18] 2025-06-04 16:54:05,946 | INFO     | pid: 3954865
[2025-06-04 11:54:18] 2025-06-04 16:54:05,946 | INFO     | pgrp: 3954865
[2025-06-04 11:54:18] 2025-06-04 16:54:05,946 | INFO     | corecount: 4
[2025-06-04 11:54:18] 2025-06-04 16:54:05,946 | INFO     | event service: False
[2025-06-04 11:54:18] 2025-06-04 16:54:05,946 | INFO     | sizes: {0: 2397072, 1: 2397327, 4: 2397533, 12: 2397561, 6952: 2424715, 6954: 2433854, 6957: 2433968}
[2025-06-04 11:54:18] 2025-06-04 16:54:05,946 | INFO     | --------------------------------------------------
[2025-06-04 11:54:18] 2025-06-04 16:54:05,946 | INFO     | 
[2025-06-04 11:54:18] 2025-06-04 16:54:05,946 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/5
[2025-06-04 11:54:18] 2025-06-04 16:54:05,964 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 11:54:18] 2025-06-04 16:54:05,965 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 11:54:18] 2025-06-04 16:54:05,965 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 11:54:18] 2025-06-04 16:54:05,965 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 11:54:18] 2025-06-04 16:54:05,965 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 11:54:18] 2025-06-04 16:54:05,965 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 11:54:18] 2025-06-04 16:54:05,965 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 11:54:18] 2025-06-04 16:54:05,965 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 11:54:18] 2025-06-04 16:54:05,965 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 11:54:18] 2025-06-04 16:54:05,965 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 11:54:18] 2025-06-04 16:54:05,965 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 11:54:18] 2025-06-04 16:54:05,965 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 11:54:18] 2025-06-04 16:54:05,965 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 11:54:18] 2025-06-04 16:54:05,965 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 11:54:18] 2025-06-04 16:54:05,965 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 11:54:18] 2025-06-04 16:54:05,965 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 11:54:18] 2025-06-04 16:54:05,965 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 11:54:18] 2025-06-04 16:54:05,965 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 11:54:18] 2025-06-04 16:54:05,965 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 11:54:18] 2025-06-04 16:54:05,965 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 11:54:18] 2025-06-04 16:54:05,966 | INFO     | job 6679379290 has completed (purged errors)
[2025-06-04 11:54:18] 2025-06-04 16:54:05,966 | INFO     | overall cleanup function is called
[2025-06-04 11:54:18] 2025-06-04 16:54:06,973 | INFO     | --- collectZombieJob: --- 10, [3954865]
[2025-06-04 11:54:18] 2025-06-04 16:54:06,973 | INFO     | zombie collector waiting for pid 3954865
[2025-06-04 11:54:18] 2025-06-04 16:54:06,974 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 11:54:18] 2025-06-04 16:54:06,974 | INFO     | collected zombie processes
[2025-06-04 11:54:18] 2025-06-04 16:54:06,974 | INFO     | will attempt to kill all subprocesses of pid=3954865
[2025-06-04 11:54:18] 2025-06-04 16:54:07,156 | INFO     | process IDs to be killed: [3954865] (in reverse order)
[2025-06-04 11:54:18] 2025-06-04 16:54:07,220 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 11:54:18] 2025-06-04 16:54:07,220 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 11:54:18] 2025-06-04 16:54:07,225 | INFO     | did not find any defunct processes belonging to 3954865
[2025-06-04 11:54:18] 2025-06-04 16:54:07,230 | INFO     | did not find any defunct processes belonging to 3954865
[2025-06-04 11:54:18] 2025-06-04 16:54:07,230 | INFO     | ready for new job
[2025-06-04 11:54:18] 2025-06-04 16:54:07,230 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 11:54:18] 2025-06-04 16:54:07,231 | INFO     | **************************************
[2025-06-04 11:54:18] 2025-06-04 16:54:07,232 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 11:54:18] 2025-06-04 16:54:07,232 | INFO     | **************************************
[2025-06-04 11:54:18] 2025-06-04 16:54:07,232 | INFO     | 
[2025-06-04 11:54:18] 2025-06-04 16:54:07,233 | INFO     | architecture information:
[2025-06-04 11:54:18] 2025-06-04 16:54:07,233 | INFO     | executing command: cat /etc/os-release
[2025-06-04 11:54:18] 2025-06-04 16:54:07,247 | INFO     | cat /etc/os-release:
[2025-06-04 11:54:18] NAME="CentOS Linux"
[2025-06-04 11:54:18] VERSION="7 (Core)"
[2025-06-04 11:54:18] ID="centos"
[2025-06-04 11:54:18] ID_LIKE="rhel fedora"
[2025-06-04 11:54:18] VERSION_ID="7"
[2025-06-04 11:54:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 11:54:18] ANSI_COLOR="0;31"
[2025-06-04 11:54:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 11:54:18] HOME_URL="https://www.centos.org/"
[2025-06-04 11:54:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 11:54:18] 
[2025-06-04 11:54:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 11:54:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 11:54:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 11:54:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 11:54:18] 
[2025-06-04 11:54:18] 2025-06-04 16:54:07,247 | INFO     | **************************************
[2025-06-04 11:54:18] 2025-06-04 16:54:07,750 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/5
[2025-06-04 11:54:18] 2025-06-04 16:54:07,765 | INFO     | sufficient remaining disk space (1815186767872 B)
[2025-06-04 11:54:18] 2025-06-04 16:54:07,765 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 11:54:18] 2025-06-04 16:54:07,765 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 11:54:18] 2025-06-04 16:54:07,765 | INFO     | update_server=False
[2025-06-04 11:54:18] 2025-06-04 16:54:07,765 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 11:54:18] 2025-06-04 16:54:07,765 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:54:18] 2025-06-04 16:54:07,766 | INFO     | aborting loop
[2025-06-04 11:54:18] 2025-06-04 16:54:07,766 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 11:54:18] 2025-06-04 16:54:07,787 | INFO     | all data control threads have been joined
[2025-06-04 11:54:18] 2025-06-04 16:54:08,111 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 11:54:18] 2025-06-04 16:54:08,764 | INFO     | all job control threads have been joined
[2025-06-04 11:54:18] 2025-06-04 16:54:08,771 | INFO     | [job] job monitor thread has finished
[2025-06-04 11:54:18] 2025-06-04 16:54:08,775 | INFO     | [job] retrieve thread has finished
[2025-06-04 11:54:18] 2025-06-04 16:54:08,792 | INFO     | [data] control thread has finished
[2025-06-04 11:54:18] 2025-06-04 16:54:08,804 | INFO     | PID=3948054 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 11:54:18] 2025-06-04 16:54:08,804 | INFO     | .. there are 8 such processes running
[2025-06-04 11:54:18] 2025-06-04 16:54:08,804 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 11:54:18] 2025-06-04 16:54:08,804 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 11:54:18] 2025-06-04 16:54:08,804 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 11:54:18] 2025-06-04 16:54:08,864 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 11:54:18] 2025-06-04 16:54:09,029 | INFO     | [payload] validate_post thread has finished
[2025-06-04 11:54:18] 2025-06-04 16:54:09,038 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 11:54:18] 2025-06-04 16:54:09,091 | INFO     | all payload control threads have been joined
[2025-06-04 11:54:18] 2025-06-04 16:54:09,243 | INFO     | [data] copytool_in thread has finished
[2025-06-04 11:54:18] 2025-06-04 16:54:09,769 | INFO     | [job] control thread has finished
[2025-06-04 11:54:18] 2025-06-04 16:54:09,770 | INFO     | [data] copytool_out thread has finished
[2025-06-04 11:54:18] 2025-06-04 16:54:09,938 | INFO     | [job] validate thread has finished
[2025-06-04 11:54:18] 2025-06-04 16:54:09,962 | INFO     | [payload] failed_post thread has finished
[2025-06-04 11:54:18] 2025-06-04 16:54:09,964 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 11:54:18] 2025-06-04 16:54:10,096 | INFO     | [payload] control thread has finished
[2025-06-04 11:54:18] 2025-06-04 16:54:10,210 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 11:54:18] 2025-06-04 16:54:10,455 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:54:18] 2025-06-04 16:54:11,461 | INFO     | [job] queue monitor thread has finished
[2025-06-04 11:54:18] 2025-06-04 16:54:12,118 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 11:54:18] 2025-06-04 16:54:13,144 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 138637275555648)>', '<ExcThread(monitor, started 138636890736384)>']
[2025-06-04 11:54:18] 2025-06-04 16:54:13,821 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 11:54:18] 2025-06-04 16:54:13,822 | INFO     | [monitor] control thread has ended
[2025-06-04 11:54:18] 2025-06-04 16:54:18,168 | INFO     | all workflow threads have been joined
[2025-06-04 11:54:18] 2025-06-04 16:54:18,168 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 11:54:18] 2025-06-04 16:54:18,168 | INFO     | traces error code: 0
[2025-06-04 11:54:18] 2025-06-04 16:54:18,168 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 11:54:18] 2025-06-04 16:54:18,245 [wrapper] ==== pilot stdout END ====
[2025-06-04 11:54:18] 2025-06-04 16:54:18,247 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 11:54:18] 2025-06-04 16:54:18,249 [wrapper] pilotpid: 3948054
[2025-06-04 11:54:18] 2025-06-04 16:54:18,251 [wrapper] Pilot exit status: 0
[2025-06-04 11:54:18] 2025-06-04 16:54:18,258 [wrapper] pandaids: 6679379290
[2025-06-04 11:54:18] 2025-06-04 16:54:18,297 [wrapper] cleanup supervisor_pilot 4156946 3948055
[2025-06-04 11:54:18] 2025-06-04 16:54:18,300 [wrapper] Test setup, not cleaning
[2025-06-04 11:54:18] 2025-06-04 16:54:18,302 [wrapper] apfmon messages muted
[2025-06-04 11:54:18] 2025-06-04 16:54:18,304 [wrapper] ==== wrapper stdout END ====
[2025-06-04 11:54:18] 2025-06-04 16:54:18,306 [wrapper] ==== wrapper stderr END ====
[2025-06-04 11:54:18]  *** Error codes and diagnostics ***
[2025-06-04 11:54:18]     "exeErrorCode": 0,
[2025-06-04 11:54:18]     "exeErrorDiag": "",
[2025-06-04 11:54:18]     "pilotErrorCode": 0,
[2025-06-04 11:54:18]     "pilotErrorDiag": "",
[2025-06-04 11:54:18]  *** Listing of results directory ***
[2025-06-04 11:54:18] total 388736
[2025-06-04 11:54:18] -rw-r--r-- 1 boinc boinc    495897 Jun  4 03:46 pilot3.tar.gz
[2025-06-04 11:54:18] -rwx------ 1 boinc boinc     37140 Jun  4 04:01 runpilot2-wrapper.sh
[2025-06-04 11:54:18] -rw-r--r-- 1 boinc boinc      5111 Jun  4 04:01 queuedata.json
[2025-06-04 11:54:18] -rw-r--r-- 1 boinc boinc       100 Jun  4 09:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 11:54:18] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 09:57 run_atlas
[2025-06-04 11:54:18] -rw-r--r-- 1 boinc boinc       105 Jun  4 09:57 job.xml
[2025-06-04 11:54:18] -rw-r--r-- 1 boinc boinc      9628 Jun  4 09:57 init_data.xml
[2025-06-04 11:54:18] -rw-r--r-- 2 boinc boinc 212602437 Jun  4 09:57 EVNT.45006593._001796.pool.root.1
[2025-06-04 11:54:18] -rw-r--r-- 2 boinc boinc     15093 Jun  4 09:57 start_atlas.sh
[2025-06-04 11:54:18] drwxrwx--x 2 boinc boinc      4096 Jun  4 09:57 shared
[2025-06-04 11:54:18] -rw-r--r-- 2 boinc boinc    508883 Jun  4 09:57 input.tar.gz
[2025-06-04 11:54:18] -rw-r--r-- 1 boinc boinc         0 Jun  4 09:57 boinc_lockfile
[2025-06-04 11:54:18] -rw-r--r-- 1 boinc boinc      2525 Jun  4 09:57 pandaJob.out
[2025-06-04 11:54:18] -rw------- 1 boinc boinc    987207 Jun  4 09:57 agis_schedconf.cvmfs.json
[2025-06-04 11:54:18] -rw------- 1 boinc boinc   1598969 Jun  4 09:57 agis_ddmendpoints.agis.ALL.json
[2025-06-04 11:54:18] drwx------ 4 boinc boinc      4096 Jun  4 09:57 pilot3
[2025-06-04 11:54:18] -rw------- 1 boinc boinc 179738778 Jun  4 11:53 HITS.45006595._056238.pool.root.1
[2025-06-04 11:54:18] -rw-r--r-- 1 boinc boinc       529 Jun  4 11:53 boinc_task_state.xml
[2025-06-04 11:54:18] -rw------- 1 boinc boinc        95 Jun  4 11:53 pilot_heartbeat.json
[2025-06-04 11:54:18] -rw------- 1 boinc boinc      1022 Jun  4 11:53 memory_monitor_summary.json
[2025-06-04 11:54:18] -rw------- 1 boinc boinc    269292 Jun  4 11:54 log.45006595._056238.job.log.tgz.1
[2025-06-04 11:54:18] -rw------- 1 boinc boinc      7668 Jun  4 11:54 heartbeat.json
[2025-06-04 11:54:18] -rw-r--r-- 1 boinc boinc        27 Jun  4 11:54 wrapper_checkpoint.txt
[2025-06-04 11:54:18] -rw-r--r-- 1 boinc boinc      8192 Jun  4 11:54 boinc_mmap_file
[2025-06-04 11:54:18] -rw------- 1 boinc boinc      4756 Jun  4 11:54 pilotlog.txt
[2025-06-04 11:54:18] -rw------- 1 boinc boinc    674176 Jun  4 11:54 log.45006595._056238.job.log.1
[2025-06-04 11:54:18] -rw------- 1 boinc boinc       357 Jun  4 11:54 output.list
[2025-06-04 11:54:18] -rw-r--r-- 1 boinc boinc       620 Jun  4 11:54 runtime_log
[2025-06-04 11:54:18] -rw------- 1 boinc boinc    962560 Jun  4 11:54 result.tar.gz
[2025-06-04 11:54:18] -rw------- 1 boinc boinc       653 Jun  4 11:54 xqWKDmZBzg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmjunKDm1ipEKo.diag
[2025-06-04 11:54:18] -rw-r--r-- 1 boinc boinc      8761 Jun  4 11:54 runtime_log.err
[2025-06-04 11:54:18] -rw-r--r-- 1 boinc boinc     20576 Jun  4 11:54 stderr.txt
[2025-06-04 11:54:18] HITS file was successfully produced:
[2025-06-04 11:54:18] -rw------- 1 boinc boinc 179738778 Jun  4 11:53 shared/HITS.pool.root.1
[2025-06-04 11:54:18]  *** Contents of shared directory: ***
[2025-06-04 11:54:18] total 384612
[2025-06-04 11:54:18] -rw-r--r-- 2 boinc boinc 212602437 Jun  4 09:57 ATLAS.root_0
[2025-06-04 11:54:18] -rw-r--r-- 2 boinc boinc     15093 Jun  4 09:57 start_atlas.sh
[2025-06-04 11:54:18] -rw-r--r-- 2 boinc boinc    508883 Jun  4 09:57 input.tar.gz
[2025-06-04 11:54:18] -rw------- 1 boinc boinc 179738778 Jun  4 11:53 HITS.pool.root.1
[2025-06-04 11:54:18] -rw------- 1 boinc boinc    962560 Jun  4 11:54 result.tar.gz
11:54:20 (3944270): run_atlas exited; CPU time 26645.434666
11:54:20 (3944270): called boinc_finish(0)

</stderr_txt>
]]>

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