Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:07:48 (21730): wrapper (7.7.26015): starting
00:07:48 (21730): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 00:07:48] Arguments: --nthreads 8
[2025-06-05 00:07:48] Threads: 8
[2025-06-05 00:07:48] Checking for CVMFS
[2025-06-05 00:07:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 00:07:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 00:07:49] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 00:07:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 00:07:50] 2.11.2.0 16797 33821 105788 146795 2 158 20509844 25165824 3183 130560 0 14390669 99.818 18162641 2166 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 00:07:50] CVMFS is ok
[2025-06-05 00:07:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 00:07:50] Checking for apptainer binary...
[2025-06-05 00:07:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 00:07:50] Running /usr/bin/apptainer --version
[2025-06-05 00:07:50] apptainer version 1.3.2-1.el7
[2025-06-05 00:07:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 00:08:03] cg-vwn223.simple-grid.lan
[2025-06-05 00:08:03] apptainer works
[2025-06-05 00:08:03] Set ATHENA_PROC_NUMBER=8
[2025-06-05 00:08:03] Set ATHENA_CORE_NUMBER=8
[2025-06-05 00:08:03] Starting ATLAS job with PandaID=6679367316
[2025-06-05 00:08:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 06:06:07]  *** The last 200 lines of the pilot log: ***
[2025-06-05 06:06:07] 2025-06-05 01:43:06,072 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 06:06:07] 2025-06-05 01:43:06,073 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 06:06:07] 2025-06-05 01:43:06,077 | INFO     | fitting pss+swap vs Time
[2025-06-05 06:06:07] 2025-06-05 01:43:06,078 | INFO     | sum of square deviations: 2830787960.0
[2025-06-05 06:06:07] 2025-06-05 01:43:06,080 | INFO     | sum of deviations: 26092396749.0
[2025-06-05 06:06:07] 2025-06-05 01:43:06,080 | INFO     | mean x: 1749081303.0
[2025-06-05 06:06:07] 2025-06-05 01:43:06,080 | INFO     | mean y: 2449050.04784689
[2025-06-05 06:06:07] 2025-06-05 01:43:06,080 | INFO     | -- intersect: -16119466101.84996
[2025-06-05 06:06:07] 2025-06-05 01:43:06,080 | INFO     | intersect: -16119466101.84996
[2025-06-05 06:06:07] 2025-06-05 01:43:06,081 | INFO     | chi2: 2.5732451788060917
[2025-06-05 06:06:07] 2025-06-05 01:43:06,081 | INFO     | sum of square deviations: 2632440055.0
[2025-06-05 06:06:07] 2025-06-05 01:43:06,083 | INFO     | sum of deviations: 39069014924.5
[2025-06-05 06:06:07] 2025-06-05 01:43:06,083 | INFO     | mean x: 1749081150.5
[2025-06-05 06:06:07] 2025-06-05 01:43:06,083 | INFO     | mean y: 2458822.132352941
[2025-06-05 06:06:07] 2025-06-05 01:43:06,083 | INFO     | -- intersect: -25956300407.067314
[2025-06-05 06:06:07] 2025-06-05 01:43:06,083 | INFO     | intersect: -25956300407.067314
[2025-06-05 06:06:07] 2025-06-05 01:43:06,084 | INFO     | chi2: 1.8013205143469344
[2025-06-05 06:06:07] 2025-06-05 01:43:06,084 | INFO     | current chi2=1.8013205143469344 (change=29.998100096210305 %)
[2025-06-05 06:06:07] 2025-06-05 01:43:06,084 | INFO     | sum of square deviations: 2443580700.0
[2025-06-05 06:06:07] 2025-06-05 01:43:06,085 | INFO     | sum of deviations: 38058456808.0
[2025-06-05 06:06:07] 2025-06-05 01:43:06,086 | INFO     | mean x: 1749080998.0
[2025-06-05 06:06:07] 2025-06-05 01:43:06,086 | INFO     | mean y: 2458005.969849246
[2025-06-05 06:06:07] 2025-06-05 01:43:06,086 | INFO     | -- intersect: -27239254787.095074
[2025-06-05 06:06:07] 2025-06-05 01:43:06,086 | INFO     | intersect: -27239254787.095074
[2025-06-05 06:06:07] 2025-06-05 01:43:06,086 | INFO     | chi2: 1.8022402283148904
[2025-06-05 06:06:07] 2025-06-05 01:43:06,086 | INFO     | current chi2=1.8022402283148904 (change=-0.05105776349243557 %)
[2025-06-05 06:06:07] 2025-06-05 01:43:06,086 | INFO     | right removable region: 198
[2025-06-05 06:06:07] 2025-06-05 01:43:06,087 | INFO     | sum of square deviations: 2632440055.0
[2025-06-05 06:06:07] 2025-06-05 01:43:06,088 | INFO     | sum of deviations: -12497681311.5
[2025-06-05 06:06:07] 2025-06-05 01:43:06,089 | INFO     | mean x: 1749081455.5
[2025-06-05 06:06:07] 2025-06-05 01:43:06,089 | INFO     | mean y: 2478483.7303921566
[2025-06-05 06:06:07] 2025-06-05 01:43:06,089 | INFO     | -- intersect: 8306357076.207428
[2025-06-05 06:06:07] 2025-06-05 01:43:06,089 | INFO     | intersect: 8306357076.207428
[2025-06-05 06:06:07] 2025-06-05 01:43:06,089 | INFO     | chi2: 0.8504360628161023
[2025-06-05 06:06:07] 2025-06-05 01:43:06,089 | INFO     | current chi2=0.8504360628161023 (change=66.9508343075696 %)
[2025-06-05 06:06:07] 2025-06-05 01:43:06,090 | INFO     | sum of square deviations: 2443580700.0
[2025-06-05 06:06:07] 2025-06-05 01:43:06,091 | INFO     | sum of deviations: -17693597413.999992
[2025-06-05 06:06:07] 2025-06-05 01:43:06,091 | INFO     | mean x: 1749081608.0
[2025-06-05 06:06:07] 2025-06-05 01:43:06,091 | INFO     | mean y: 2482628.743718593
[2025-06-05 06:06:07] 2025-06-05 01:43:06,091 | INFO     | -- intersect: 12667317400.185377
[2025-06-05 06:06:07] 2025-06-05 01:43:06,092 | INFO     | intersect: 12667317400.185377
[2025-06-05 06:06:07] 2025-06-05 01:43:06,092 | INFO     | chi2: 0.8017402613824272
[2025-06-05 06:06:07] 2025-06-05 01:43:06,092 | INFO     | current chi2=0.8017402613824272 (change=5.725980301496819 %)
[2025-06-05 06:06:07] 2025-06-05 01:43:06,092 | INFO     | left removable region: 20
[2025-06-05 06:06:07] 2025-06-05 01:43:06,092 | INFO     | sum of square deviations: 1748737904.5
[2025-06-05 06:06:07] 2025-06-05 01:43:06,094 | INFO     | sum of deviations: -4438826497.500002
[2025-06-05 06:06:07] 2025-06-05 01:43:06,094 | INFO     | mean x: 1749081577.5
[2025-06-05 06:06:07] 2025-06-05 01:43:06,094 | INFO     | mean y: 2494042.6235955055
[2025-06-05 06:06:07] 2025-06-05 01:43:06,094 | INFO     | -- intersect: 4442192886.296772
[2025-06-05 06:06:07] 2025-06-05 01:43:06,094 | INFO     | intersect: 4442192886.296772
[2025-06-05 06:06:07] 2025-06-05 01:43:06,095 | INFO     | chi2: 0.006156523656904448
[2025-06-05 06:06:07] 2025-06-05 01:43:06,095 | INFO     | -- intersect: 4442192886.296772
[2025-06-05 06:06:07] 2025-06-05 01:43:06,095 | INFO     | current memory leak: -2.54 B/s (using 178 data points, chi2=0.01)
[2025-06-05 06:06:07] 2025-06-05 01:43:06,096 | INFO     | ..............................
[2025-06-05 06:06:07] 2025-06-05 01:43:06,096 | INFO     | . Timing measurements:
[2025-06-05 06:06:07] 2025-06-05 01:43:06,096 | INFO     | . get job = 0 s
[2025-06-05 06:06:07] 2025-06-05 01:43:06,096 | INFO     | . initial setup = 2 s
[2025-06-05 06:06:07] 2025-06-05 01:43:06,096 | INFO     | . payload setup = 13 s
[2025-06-05 06:06:07] 2025-06-05 01:43:06,096 | INFO     | . stage-in = 0 s
[2025-06-05 06:06:07] 2025-06-05 01:43:06,096 | INFO     | . payload execution = 12753 s
[2025-06-05 06:06:07] 2025-06-05 01:43:06,097 | INFO     | . stage-out = 4 s
[2025-06-05 06:06:07] 2025-06-05 01:43:06,097 | INFO     | . log creation = 1 s
[2025-06-05 06:06:07] 2025-06-05 01:43:06,097 | INFO     | ..............................
[2025-06-05 06:06:07] 2025-06-05 01:43:06,267 | INFO     | 
[2025-06-05 06:06:07] 2025-06-05 01:43:06,267 | INFO     | job summary report
[2025-06-05 06:06:07] 2025-06-05 01:43:06,267 | INFO     | --------------------------------------------------
[2025-06-05 06:06:07] 2025-06-05 01:43:06,268 | INFO     | PanDA job id: 6679367316
[2025-06-05 06:06:07] 2025-06-05 01:43:06,268 | INFO     | task id: 45006595
[2025-06-05 06:06:07] 2025-06-05 01:43:06,268 | INFO     | errors: (none)
[2025-06-05 06:06:07] 2025-06-05 01:43:06,268 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 06:06:07] 2025-06-05 01:43:06,268 | INFO     | pilot state: finished 
[2025-06-05 06:06:07] 2025-06-05 01:43:06,268 | INFO     | transexitcode: 0
[2025-06-05 06:06:07] 2025-06-05 01:43:06,268 | INFO     | exeerrorcode: 0
[2025-06-05 06:06:07] 2025-06-05 01:43:06,268 | INFO     | exeerrordiag: 
[2025-06-05 06:06:07] 2025-06-05 01:43:06,268 | INFO     | exitcode: 0
[2025-06-05 06:06:07] 2025-06-05 01:43:06,268 | INFO     | exitmsg: OK
[2025-06-05 06:06:07] 2025-06-05 01:43:06,268 | INFO     | cpuconsumptiontime: 47558 s
[2025-06-05 06:06:07] 2025-06-05 01:43:06,268 | INFO     | nevents: 400
[2025-06-05 06:06:07] 2025-06-05 01:43:06,268 | INFO     | neventsw: 0
[2025-06-05 06:06:07] 2025-06-05 01:43:06,269 | INFO     | pid: 1566
[2025-06-05 06:06:07] 2025-06-05 01:43:06,269 | INFO     | pgrp: 1566
[2025-06-05 06:06:07] 2025-06-05 01:43:06,269 | INFO     | corecount: 8
[2025-06-05 06:06:07] 2025-06-05 01:43:06,269 | INFO     | event service: False
[2025-06-05 06:06:07] 2025-06-05 01:43:06,269 | INFO     | sizes: {0: 2397119, 1: 2397318, 2: 2397318, 11: 2397552, 12: 2397580, 12768: 2426993, 12773: 2435990, 12861: 2436104}
[2025-06-05 06:06:07] 2025-06-05 01:43:06,269 | INFO     | --------------------------------------------------
[2025-06-05 06:06:07] 2025-06-05 01:43:06,269 | INFO     | 
[2025-06-05 06:06:07] 2025-06-05 01:43:06,269 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-05 06:06:07] 2025-06-05 01:43:06,397 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 01:43:06,397 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 01:43:06,397 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 01:43:06,397 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 01:43:06,397 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 01:43:06,398 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 01:43:06,398 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 01:43:06,398 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 01:43:06,398 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 01:43:06,398 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 01:43:06,398 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 01:43:06,398 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 01:43:06,398 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 01:43:06,398 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 01:43:06,398 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 01:43:06,398 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 01:43:06,399 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 01:43:06,399 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 06:06:07] 2025-06-05 01:43:06,399 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 01:43:06,399 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 06:06:07] 2025-06-05 01:43:06,399 | INFO     | job 6679367316 has completed (purged errors)
[2025-06-05 06:06:07] 2025-06-05 01:43:06,399 | INFO     | overall cleanup function is called
[2025-06-05 06:06:07] 2025-06-05 01:43:07,411 | INFO     | --- collectZombieJob: --- 10, [1566]
[2025-06-05 06:06:07] 2025-06-05 01:43:07,411 | INFO     | zombie collector waiting for pid 1566
[2025-06-05 06:06:07] 2025-06-05 01:43:07,411 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 06:06:07] 2025-06-05 01:43:07,412 | INFO     | collected zombie processes
[2025-06-05 06:06:07] 2025-06-05 01:43:07,412 | INFO     | will attempt to kill all subprocesses of pid=1566
[2025-06-05 06:06:07] 2025-06-05 01:43:07,557 | INFO     | process IDs to be killed: [1566] (in reverse order)
[2025-06-05 06:06:07] 2025-06-05 01:43:07,741 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 06:06:07] 2025-06-05 01:43:07,742 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 06:06:07] 2025-06-05 01:43:07,745 | INFO     | did not find any defunct processes belonging to 1566
[2025-06-05 06:06:07] 2025-06-05 01:43:07,750 | INFO     | did not find any defunct processes belonging to 1566
[2025-06-05 06:06:07] 2025-06-05 01:43:07,750 | INFO     | ready for new job
[2025-06-05 06:06:07] 2025-06-05 01:43:07,750 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 06:06:07] 2025-06-05 01:43:07,752 | INFO     | **************************************
[2025-06-05 06:06:07] 2025-06-05 01:43:07,752 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 06:06:07] 2025-06-05 01:43:07,752 | INFO     | **************************************
[2025-06-05 06:06:07] 2025-06-05 01:43:07,752 | INFO     | 
[2025-06-05 06:06:07] 2025-06-05 01:43:07,753 | INFO     | pilot is running in a VM
[2025-06-05 06:06:07] 2025-06-05 01:43:07,753 | INFO     | architecture information:
[2025-06-05 06:06:07] 2025-06-05 01:43:07,759 | INFO     | executing command: cat /etc/os-release
[2025-06-05 06:06:07] 2025-06-05 01:43:08,077 | INFO     | PID=25414 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-05 06:06:07] 2025-06-05 01:43:08,077 | INFO     | .. there are 9 such processes running
[2025-06-05 06:06:07] 2025-06-05 01:43:08,111 | INFO     | cat /etc/os-release:
[2025-06-05 06:06:07] NAME="CentOS Linux"
[2025-06-05 06:06:07] VERSION="7 (Core)"
[2025-06-05 06:06:07] ID="centos"
[2025-06-05 06:06:07] ID_LIKE="rhel fedora"
[2025-06-05 06:06:07] VERSION_ID="7"
[2025-06-05 06:06:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 06:06:07] ANSI_COLOR="0;31"
[2025-06-05 06:06:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 06:06:07] HOME_URL="https://www.centos.org/"
[2025-06-05 06:06:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 06:06:07] 
[2025-06-05 06:06:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 06:06:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 06:06:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 06:06:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 06:06:07] 
[2025-06-05 06:06:07] 2025-06-05 01:43:08,112 | INFO     | **************************************
[2025-06-05 06:06:07] 2025-06-05 01:43:08,615 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-05 06:06:07] 2025-06-05 01:43:08,959 | INFO     | sufficient remaining disk space (497415094272 B)
[2025-06-05 06:06:07] 2025-06-05 01:43:08,959 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 06:06:07] 2025-06-05 01:43:08,959 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 06:06:07] 2025-06-05 01:43:08,959 | INFO     | update_server=False
[2025-06-05 06:06:07] 2025-06-05 01:43:08,959 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 06:06:07] 2025-06-05 01:43:08,960 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 06:06:07] 2025-06-05 01:43:08,960 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 06:06:07] 2025-06-05 01:43:08,961 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 06:06:07] 2025-06-05 01:43:08,961 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 06:06:07] 2025-06-05 01:43:08,962 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 06:06:07] 2025-06-05 01:43:08,962 | INFO     | aborting loop
[2025-06-05 06:06:07] 2025-06-05 01:43:08,967 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 06:06:07] 2025-06-05 01:43:09,228 | INFO     | all data control threads have been joined
[2025-06-05 06:06:07] 2025-06-05 01:43:09,696 | INFO     | all job control threads have been joined
[2025-06-05 06:06:07] 2025-06-05 01:43:09,742 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 06:06:07] 2025-06-05 01:43:09,782 | INFO     | all payload control threads have been joined
[2025-06-05 06:06:07] 2025-06-05 01:43:09,965 | INFO     | [job] retrieve thread has finished
[2025-06-05 06:06:07] 2025-06-05 01:43:09,971 | INFO     | [job] job monitor thread has finished
[2025-06-05 06:06:07] 2025-06-05 01:43:10,234 | INFO     | [data] control thread has finished
[2025-06-05 06:06:07] 2025-06-05 01:43:10,374 | INFO     | [payload] failed_post thread has finished
[2025-06-05 06:06:07] 2025-06-05 01:43:10,528 | INFO     | [payload] validate_post thread has finished
[2025-06-05 06:06:07] 2025-06-05 01:43:10,574 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 06:06:07] 2025-06-05 01:43:10,702 | INFO     | [job] control thread has finished
[2025-06-05 06:06:07] 2025-06-05 01:43:10,788 | INFO     | [payload] control thread has finished
[2025-06-05 06:06:07] 2025-06-05 01:43:10,974 | INFO     | [data] copytool_out thread has finished
[2025-06-05 06:06:07] 2025-06-05 01:43:11,086 | INFO     | [job] validate thread has finished
[2025-06-05 06:06:07] 2025-06-05 01:43:11,247 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 06:06:07] 2025-06-05 01:43:11,342 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 06:06:07] 2025-06-05 01:43:11,376 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 06:06:07] 2025-06-05 01:43:11,429 | INFO     | [data] copytool_in thread has finished
[2025-06-05 06:06:07] 2025-06-05 01:43:12,253 | INFO     | [job] queue monitor thread has finished
[2025-06-05 06:06:07] 2025-06-05 01:43:13,753 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 06:06:07] 2025-06-05 01:43:19,298 | INFO     | job.realtimelogging is not enabled
[2025-06-05 06:06:07] 2025-06-05 01:43:20,304 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 06:06:07] 2025-06-05 01:43:21,068 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140257556604736)>', '<ExcThread(monitor, started 140256972101376)>']
[2025-06-05 06:06:07] 2025-06-05 01:43:22,038 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 06:06:07] 2025-06-05 01:43:22,038 | INFO     | [monitor] control thread has ended
[2025-06-05 06:06:07] 2025-06-05 01:43:26,094 | INFO     | all workflow threads have been joined
[2025-06-05 06:06:07] 2025-06-05 01:43:26,094 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 06:06:07] 2025-06-05 01:43:26,095 | INFO     | traces error code: 0
[2025-06-05 06:06:07] 2025-06-05 01:43:26,095 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 06:06:07] 2025-06-05 01:43:26,528 [wrapper] ==== pilot stdout END ====
[2025-06-05 06:06:07] 2025-06-05 01:43:26,642 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 06:06:07] 2025-06-05 01:43:26,764 [wrapper] pilotpid: 25414
[2025-06-05 06:06:07] 2025-06-05 01:43:26,895 [wrapper] Pilot exit status: 0
[2025-06-05 06:06:07] 2025-06-05 01:43:27,396 [wrapper] pandaids: 6679367316
[2025-06-05 06:06:07] 2025-06-05 01:43:28,172 [wrapper] cleanup supervisor_pilot  5300 25415
[2025-06-05 06:06:07] 2025-06-05 01:43:28,275 [wrapper] Test setup, not cleaning
[2025-06-05 06:06:07] 2025-06-05 01:43:28,377 [wrapper] apfmon messages muted
[2025-06-05 06:06:07] 2025-06-05 01:43:28,449 [wrapper] ==== wrapper stdout END ====
[2025-06-05 06:06:07] 2025-06-05 01:43:28,561 [wrapper] ==== wrapper stderr END ====
[2025-06-05 06:06:07]  *** Error codes and diagnostics ***
[2025-06-05 06:06:07]     "exeErrorCode": 0,
[2025-06-05 06:06:07]     "exeErrorDiag": "",
[2025-06-05 06:06:07]     "pilotErrorCode": 0,
[2025-06-05 06:06:07]     "pilotErrorDiag": "",
[2025-06-05 06:06:07]  *** Listing of results directory ***
[2025-06-05 06:06:07] total 383308
[2025-06-05 06:06:07] -rw-r--r--. 1 boinc boinc    495897 Jun  4 10:46 pilot3.tar.gz
[2025-06-05 06:06:07] -rw-r--r--. 1 boinc boinc      5111 Jun  4 10:58 queuedata.json
[2025-06-05 06:06:07] -rwx------. 1 boinc boinc     37140 Jun  4 10:58 runpilot2-wrapper.sh
[2025-06-05 06:06:07] -rw-r--r--. 1 boinc boinc       100 Jun  5 00:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 06:06:07] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 00:07 run_atlas
[2025-06-05 06:06:07] -rw-r--r--. 1 boinc boinc       105 Jun  5 00:07 job.xml
[2025-06-05 06:06:07] -rw-r--r--. 2 boinc boinc 213760504 Jun  5 00:07 EVNT.45006593._000937.pool.root.1
[2025-06-05 06:06:07] -rw-r--r--. 2 boinc boinc     15093 Jun  5 00:07 start_atlas.sh
[2025-06-05 06:06:07] drwxrwx--x. 2 boinc boinc        68 Jun  5 00:07 shared
[2025-06-05 06:06:07] -rw-r--r--. 2 boinc boinc    508882 Jun  5 00:07 input.tar.gz
[2025-06-05 06:06:07] -rw-r--r--. 1 boinc boinc      6392 Jun  5 00:07 init_data.xml
[2025-06-05 06:06:07] -rw-r--r--. 1 boinc boinc         0 Jun  5 00:07 boinc_lockfile
[2025-06-05 06:06:07] -rw-r--r--. 1 boinc boinc      2524 Jun  5 00:08 pandaJob.out
[2025-06-05 06:06:07] -rw-------. 1 boinc boinc    987032 Jun  5 00:08 agis_schedconf.cvmfs.json
[2025-06-05 06:06:07] drwx------. 4 boinc boinc      4096 Jun  5 00:08 pilot3
[2025-06-05 06:06:07] -rw-------. 1 boinc boinc 171922175 Jun  5 03:40 HITS.45006595._056192.pool.root.1
[2025-06-05 06:06:07] -rw-r--r--. 1 boinc boinc       531 Jun  5 03:40 boinc_task_state.xml
[2025-06-05 06:06:07] -rw-------. 1 boinc boinc      1016 Jun  5 03:41 memory_monitor_summary.json
[2025-06-05 06:06:07] -rw-------. 1 boinc boinc   1598969 Jun  5 03:41 agis_ddmendpoints.agis.ALL.json
[2025-06-05 06:06:07] -rw-------. 1 boinc boinc    380735 Jun  5 03:41 log.45006595._056192.job.log.tgz.1
[2025-06-05 06:06:07] -rw-------. 1 boinc boinc        95 Jun  5 03:42 pilot_heartbeat.json
[2025-06-05 06:06:07] -rw-------. 1 boinc boinc      7689 Jun  5 03:43 heartbeat.json
[2025-06-05 06:06:07] -rw-------. 1 boinc boinc      5003 Jun  5 03:43 pilotlog.txt
[2025-06-05 06:06:07] -rw-------. 1 boinc boinc   1121498 Jun  5 03:43 log.45006595._056192.job.log.1
[2025-06-05 06:06:07] -rw-------. 1 boinc boinc       357 Jun  5 03:43 output.list
[2025-06-05 06:06:07] -rw-r--r--. 1 boinc boinc       620 Jun  5 03:43 runtime_log
[2025-06-05 06:06:07] -rw-------. 1 boinc boinc   1525760 Jun  5 03:43 result.tar.gz
[2025-06-05 06:06:07] -rw-------. 1 boinc boinc       657 Jun  5 03:43 YlTNDm17yg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmvtnKDmGRc5Kn.diag
[2025-06-05 06:06:07] -rw-r--r--. 1 boinc boinc      8659 Jun  5 03:43 runtime_log.err
[2025-06-05 06:06:07] -rw-r--r--. 1 boinc boinc        28 Jun  5 06:06 wrapper_checkpoint.txt
[2025-06-05 06:06:07] -rw-r--r--. 1 boinc boinc      8192 Jun  5 06:06 boinc_mmap_file
[2025-06-05 06:06:07] -rw-r--r--. 1 boinc boinc     20564 Jun  5 06:06 stderr.txt
[2025-06-05 06:06:07] HITS file was successfully produced:
[2025-06-05 06:06:07] -rw-------. 1 boinc boinc 171922175 Jun  5 03:40 shared/HITS.pool.root.1
[2025-06-05 06:06:07]  *** Contents of shared directory: ***
[2025-06-05 06:06:07] total 378656
[2025-06-05 06:06:07] -rw-r--r--. 2 boinc boinc 213760504 Jun  5 00:07 ATLAS.root_0
[2025-06-05 06:06:07] -rw-r--r--. 2 boinc boinc     15093 Jun  5 00:07 start_atlas.sh
[2025-06-05 06:06:07] -rw-r--r--. 2 boinc boinc    508882 Jun  5 00:07 input.tar.gz
[2025-06-05 06:06:07] -rw-------. 1 boinc boinc 171922175 Jun  5 03:40 HITS.pool.root.1
[2025-06-05 06:06:07] -rw-------. 1 boinc boinc   1525760 Jun  5 03:43 result.tar.gz
06:06:09 (21730): run_atlas exited; CPU time 47722.852513
06:06:09 (21730): called boinc_finish(0)

</stderr_txt>
]]>

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