Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:39:32 (8786): wrapper (7.7.26015): starting
23:39:32 (8786): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 23:39:32] Arguments: --nthreads 8
[2025-06-04 23:39:32] Threads: 8
[2025-06-04 23:39:32] Checking for CVMFS
[2025-06-04 23:39:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 23:39:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 23:39:33] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 23:39:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 23:39:33] 2.11.2.0 24901 33747 90240 146795 1 129 16096800 25165825 3125 130560 0 17856723 99.791 19903839 2149 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 23:39:33] CVMFS is ok
[2025-06-04 23:39:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 23:39:33] Checking for apptainer binary...
[2025-06-04 23:39:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 23:39:33] Running /usr/bin/apptainer --version
[2025-06-04 23:39:33] apptainer version 1.3.2-1.el7
[2025-06-04 23:39:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 23:39:50] cg-vwn281.simple-grid.lan
[2025-06-04 23:39:50] apptainer works
[2025-06-04 23:39:50] Set ATHENA_PROC_NUMBER=8
[2025-06-04 23:39:50] Set ATHENA_CORE_NUMBER=8
[2025-06-04 23:39:50] Starting ATLAS job with PandaID=6679367315
[2025-06-04 23:39:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 03:44:52]  *** The last 200 lines of the pilot log: ***
[2025-06-05 03:44:52] 2025-06-05 01:37:05,059 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 03:44:52] 2025-06-05 01:37:05,059 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 03:44:52] 2025-06-05 01:37:05,064 | INFO     | fitting pss+swap vs Time
[2025-06-05 03:44:52] 2025-06-05 01:37:05,065 | INFO     | sum of square deviations: 3346927870.0
[2025-06-05 03:44:52] 2025-06-05 01:37:05,067 | INFO     | sum of deviations: 85713383779.0
[2025-06-05 03:44:52] 2025-06-05 01:37:05,067 | INFO     | mean x: 1749080589.0
[2025-06-05 03:44:52] 2025-06-05 01:37:05,067 | INFO     | mean y: 2416488.3122171946
[2025-06-05 03:44:52] 2025-06-05 01:37:05,067 | INFO     | -- intersect: -44790785399.649704
[2025-06-05 03:44:52] 2025-06-05 01:37:05,067 | INFO     | intersect: -44790785399.649704
[2025-06-05 03:44:52] 2025-06-05 01:37:05,068 | INFO     | chi2: 6.671204560622368
[2025-06-05 03:44:52] 2025-06-05 01:37:05,068 | INFO     | sum of square deviations: 3124858590.0
[2025-06-05 03:44:52] 2025-06-05 01:37:05,070 | INFO     | sum of deviations: 98705363249.0
[2025-06-05 03:44:52] 2025-06-05 01:37:05,070 | INFO     | mean x: 1749080436.5
[2025-06-05 03:44:52] 2025-06-05 01:37:05,070 | INFO     | mean y: 2425218.5
[2025-06-05 03:44:52] 2025-06-05 01:37:05,070 | INFO     | -- intersect: -55246033188.20569
[2025-06-05 03:44:52] 2025-06-05 01:37:05,071 | INFO     | intersect: -55246033188.20569
[2025-06-05 03:44:52] 2025-06-05 01:37:05,071 | INFO     | chi2: 5.8924193960923565
[2025-06-05 03:44:52] 2025-06-05 01:37:05,071 | INFO     | current chi2=5.8924193960923565 (change=11.67383127669162 %)
[2025-06-05 03:44:52] 2025-06-05 01:37:05,071 | INFO     | right removable region: 215
[2025-06-05 03:44:52] 2025-06-05 01:37:05,072 | INFO     | sum of square deviations: 3124858590.0
[2025-06-05 03:44:52] 2025-06-05 01:37:05,073 | INFO     | sum of deviations: 10604511267.0
[2025-06-05 03:44:52] 2025-06-05 01:37:05,074 | INFO     | mean x: 1749080741.5
[2025-06-05 03:44:52] 2025-06-05 01:37:05,074 | INFO     | mean y: 2468015.287037037
[2025-06-05 03:44:52] 2025-06-05 01:37:05,074 | INFO     | -- intersect: -5933207438.7915
[2025-06-05 03:44:52] 2025-06-05 01:37:05,074 | INFO     | intersect: -5933207438.7915
[2025-06-05 03:44:52] 2025-06-05 01:37:05,074 | INFO     | chi2: 1.958162177918977
[2025-06-05 03:44:52] 2025-06-05 01:37:05,075 | INFO     | current chi2=1.958162177918977 (change=70.64754707901962 %)
[2025-06-05 03:44:52] 2025-06-05 01:37:05,075 | INFO     | sum of square deviations: 2912836010.0
[2025-06-05 03:44:52] 2025-06-05 01:37:05,077 | INFO     | sum of deviations: -20927921907.0
[2025-06-05 03:44:52] 2025-06-05 01:37:05,077 | INFO     | mean x: 1749080894.0
[2025-06-05 03:44:52] 2025-06-05 01:37:05,077 | INFO     | mean y: 2490530.63507109
[2025-06-05 03:44:52] 2025-06-05 01:37:05,077 | INFO     | -- intersect: 12569153478.013885
[2025-06-05 03:44:52] 2025-06-05 01:37:05,077 | INFO     | intersect: 12569153478.013885
[2025-06-05 03:44:52] 2025-06-05 01:37:05,078 | INFO     | chi2: 0.9432258227210639
[2025-06-05 03:44:52] 2025-06-05 01:37:05,078 | INFO     | current chi2=0.9432258227210639 (change=51.83106724472278 %)
[2025-06-05 03:44:52] 2025-06-05 01:37:05,078 | INFO     | sum of square deviations: 2710627567.5
[2025-06-05 03:44:52] 2025-06-05 01:37:05,080 | INFO     | sum of deviations: -19624893129.5
[2025-06-05 03:44:52] 2025-06-05 01:37:05,080 | INFO     | mean x: 1749081046.5
[2025-06-05 03:44:52] 2025-06-05 01:37:05,080 | INFO     | mean y: 2489507.975728155
[2025-06-05 03:44:52] 2025-06-05 01:37:05,081 | INFO     | -- intersect: 12665803724.932064
[2025-06-05 03:44:52] 2025-06-05 01:37:05,081 | INFO     | intersect: 12665803724.932064
[2025-06-05 03:44:52] 2025-06-05 01:37:05,081 | INFO     | chi2: 0.9282310489965943
[2025-06-05 03:44:52] 2025-06-05 01:37:05,081 | INFO     | current chi2=0.9282310489965943 (change=1.5897331649818505 %)
[2025-06-05 03:44:52] 2025-06-05 01:37:05,081 | INFO     | left removable region: 30
[2025-06-05 03:44:52] 2025-06-05 01:37:05,082 | INFO     | sum of square deviations: 1963274020.0
[2025-06-05 03:44:52] 2025-06-05 01:37:05,083 | INFO     | sum of deviations: 3434964777.9999995
[2025-06-05 03:44:52] 2025-06-05 01:37:05,083 | INFO     | mean x: 1749081321.0
[2025-06-05 03:44:52] 2025-06-05 01:37:05,083 | INFO     | mean y: 2493459.3189189187
[2025-06-05 03:44:52] 2025-06-05 01:37:05,084 | INFO     | -- intersect: -3057717530.2263465
[2025-06-05 03:44:52] 2025-06-05 01:37:05,084 | INFO     | intersect: -3057717530.2263465
[2025-06-05 03:44:52] 2025-06-05 01:37:05,084 | INFO     | chi2: 0.0004565555177456939
[2025-06-05 03:44:52] 2025-06-05 01:37:05,084 | INFO     | -- intersect: -3057717530.2263465
[2025-06-05 03:44:52] 2025-06-05 01:37:05,084 | INFO     | current memory leak: 1.75 B/s (using 185 data points, chi2=0.00)
[2025-06-05 03:44:52] 2025-06-05 01:37:05,085 | INFO     | ..............................
[2025-06-05 03:44:52] 2025-06-05 01:37:05,085 | INFO     | . Timing measurements:
[2025-06-05 03:44:52] 2025-06-05 01:37:05,086 | INFO     | . get job = 0 s
[2025-06-05 03:44:52] 2025-06-05 01:37:05,086 | INFO     | . initial setup = 12 s
[2025-06-05 03:44:52] 2025-06-05 01:37:05,086 | INFO     | . payload setup = 168 s
[2025-06-05 03:44:52] 2025-06-05 01:37:05,086 | INFO     | . stage-in = 0 s
[2025-06-05 03:44:52] 2025-06-05 01:37:05,086 | INFO     | . payload execution = 13587 s
[2025-06-05 03:44:52] 2025-06-05 01:37:05,086 | INFO     | . stage-out = 4 s
[2025-06-05 03:44:52] 2025-06-05 01:37:05,086 | INFO     | . log creation = 1 s
[2025-06-05 03:44:52] 2025-06-05 01:37:05,086 | INFO     | ..............................
[2025-06-05 03:44:52] 2025-06-05 01:37:05,299 | INFO     | 
[2025-06-05 03:44:52] 2025-06-05 01:37:05,299 | INFO     | job summary report
[2025-06-05 03:44:52] 2025-06-05 01:37:05,299 | INFO     | --------------------------------------------------
[2025-06-05 03:44:52] 2025-06-05 01:37:05,299 | INFO     | PanDA job id: 6679367315
[2025-06-05 03:44:52] 2025-06-05 01:37:05,300 | INFO     | task id: 45006595
[2025-06-05 03:44:52] 2025-06-05 01:37:05,300 | INFO     | errors: (none)
[2025-06-05 03:44:52] 2025-06-05 01:37:05,300 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 03:44:52] 2025-06-05 01:37:05,300 | INFO     | pilot state: finished 
[2025-06-05 03:44:52] 2025-06-05 01:37:05,300 | INFO     | transexitcode: 0
[2025-06-05 03:44:52] 2025-06-05 01:37:05,300 | INFO     | exeerrorcode: 0
[2025-06-05 03:44:52] 2025-06-05 01:37:05,300 | INFO     | exeerrordiag: 
[2025-06-05 03:44:52] 2025-06-05 01:37:05,300 | INFO     | exitcode: 0
[2025-06-05 03:44:52] 2025-06-05 01:37:05,300 | INFO     | exitmsg: OK
[2025-06-05 03:44:52] 2025-06-05 01:37:05,300 | INFO     | cpuconsumptiontime: 50397 s
[2025-06-05 03:44:52] 2025-06-05 01:37:05,301 | INFO     | nevents: 400
[2025-06-05 03:44:52] 2025-06-05 01:37:05,301 | INFO     | neventsw: 0
[2025-06-05 03:44:52] 2025-06-05 01:37:05,301 | INFO     | pid: 24454
[2025-06-05 03:44:52] 2025-06-05 01:37:05,301 | INFO     | pgrp: 24454
[2025-06-05 03:44:52] 2025-06-05 01:37:05,301 | INFO     | corecount: 8
[2025-06-05 03:44:52] 2025-06-05 01:37:05,301 | INFO     | event service: False
[2025-06-05 03:44:52] 2025-06-05 01:37:05,301 | INFO     | sizes: {0: 2396462, 1: 2397147, 2: 2397346, 13: 2397346, 23: 2397402, 34: 2397430, 45: 2397586, 55: 2397614, 66: 2397642, 77: 2397670, 88: 2397726, 90: 2398240, 98
[2025-06-05 03:44:52] 2025-06-05 01:37:05,301 | INFO     | --------------------------------------------------
[2025-06-05 03:44:52] 2025-06-05 01:37:05,301 | INFO     | 
[2025-06-05 03:44:52] 2025-06-05 01:37:05,302 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-06-05 03:44:52] 2025-06-05 01:37:05,907 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 03:44:52] 2025-06-05 01:37:05,908 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 03:44:52] 2025-06-05 01:37:05,908 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 03:44:52] 2025-06-05 01:37:05,908 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 03:44:52] 2025-06-05 01:37:05,908 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 03:44:52] 2025-06-05 01:37:05,908 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 03:44:52] 2025-06-05 01:37:05,908 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 03:44:52] 2025-06-05 01:37:05,908 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 03:44:52] 2025-06-05 01:37:05,909 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 03:44:52] 2025-06-05 01:37:05,909 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 03:44:52] 2025-06-05 01:37:05,909 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 03:44:52] 2025-06-05 01:37:05,909 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 03:44:52] 2025-06-05 01:37:05,909 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 03:44:52] 2025-06-05 01:37:05,909 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 03:44:52] 2025-06-05 01:37:05,909 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 03:44:52] 2025-06-05 01:37:05,909 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 03:44:52] 2025-06-05 01:37:05,909 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 03:44:52] 2025-06-05 01:37:05,910 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 03:44:52] 2025-06-05 01:37:05,910 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 03:44:52] 2025-06-05 01:37:05,910 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 03:44:52] 2025-06-05 01:37:05,910 | INFO     | job 6679367315 has completed (purged errors)
[2025-06-05 03:44:52] 2025-06-05 01:37:05,910 | INFO     | overall cleanup function is called
[2025-06-05 03:44:52] 2025-06-05 01:37:06,443 | INFO     | 14062s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-05 03:44:52] 2025-06-05 01:37:06,919 | INFO     | --- collectZombieJob: --- 10, [24454]
[2025-06-05 03:44:52] 2025-06-05 01:37:06,919 | INFO     | zombie collector waiting for pid 24454
[2025-06-05 03:44:52] 2025-06-05 01:37:06,919 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 03:44:52] 2025-06-05 01:37:06,920 | INFO     | collected zombie processes
[2025-06-05 03:44:52] 2025-06-05 01:37:06,920 | INFO     | will attempt to kill all subprocesses of pid=24454
[2025-06-05 03:44:52] 2025-06-05 01:37:07,030 | INFO     | process IDs to be killed: [24454] (in reverse order)
[2025-06-05 03:44:52] 2025-06-05 01:37:07,629 | INFO     | PID=17834 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-05 03:44:52] 2025-06-05 01:37:07,629 | INFO     | .. there are 9 such processes running
[2025-06-05 03:44:52] 2025-06-05 01:37:07,664 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 03:44:52] 2025-06-05 01:37:07,665 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 03:44:52] 2025-06-05 01:37:07,668 | INFO     | did not find any defunct processes belonging to 24454
[2025-06-05 03:44:52] 2025-06-05 01:37:07,672 | INFO     | did not find any defunct processes belonging to 24454
[2025-06-05 03:44:52] 2025-06-05 01:37:07,673 | INFO     | ready for new job
[2025-06-05 03:44:52] 2025-06-05 01:37:07,673 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 03:44:52] 2025-06-05 01:37:07,675 | INFO     | **************************************
[2025-06-05 03:44:52] 2025-06-05 01:37:07,675 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 03:44:52] 2025-06-05 01:37:07,675 | INFO     | **************************************
[2025-06-05 03:44:52] 2025-06-05 01:37:07,675 | INFO     | 
[2025-06-05 03:44:52] 2025-06-05 01:37:07,676 | INFO     | pilot is running in a VM
[2025-06-05 03:44:52] 2025-06-05 01:37:07,676 | INFO     | architecture information:
[2025-06-05 03:44:52] 2025-06-05 01:37:07,677 | INFO     | executing command: cat /etc/os-release
[2025-06-05 03:44:52] 2025-06-05 01:37:07,755 | INFO     | cat /etc/os-release:
[2025-06-05 03:44:52] NAME="CentOS Linux"
[2025-06-05 03:44:52] VERSION="7 (Core)"
[2025-06-05 03:44:52] ID="centos"
[2025-06-05 03:44:52] ID_LIKE="rhel fedora"
[2025-06-05 03:44:52] VERSION_ID="7"
[2025-06-05 03:44:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 03:44:52] ANSI_COLOR="0;31"
[2025-06-05 03:44:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 03:44:52] HOME_URL="https://www.centos.org/"
[2025-06-05 03:44:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 03:44:52] 
[2025-06-05 03:44:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 03:44:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 03:44:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 03:44:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 03:44:52] 
[2025-06-05 03:44:52] 2025-06-05 01:37:07,756 | INFO     | **************************************
[2025-06-05 03:44:52] 2025-06-05 01:37:08,259 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-06-05 03:44:52] 2025-06-05 01:37:08,573 | INFO     | sufficient remaining disk space (497407754240 B)
[2025-06-05 03:44:52] 2025-06-05 01:37:08,573 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 03:44:52] 2025-06-05 01:37:08,573 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 03:44:52] 2025-06-05 01:37:08,573 | INFO     | update_server=False
[2025-06-05 03:44:52] 2025-06-05 01:37:08,573 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 03:44:52] 2025-06-05 01:37:08,574 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 03:44:52] 2025-06-05 01:37:08,574 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 03:44:52] 2025-06-05 01:37:08,575 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 03:44:52] 2025-06-05 01:37:08,575 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 03:44:52] 2025-06-05 01:37:08,738 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 03:44:52] 2025-06-05 01:37:08,738 | INFO     | aborting loop
[2025-06-05 03:44:52] 2025-06-05 01:37:08,924 | INFO     | all payload control threads have been joined
[2025-06-05 03:44:52] 2025-06-05 01:37:09,144 | INFO     | all data control threads have been joined
[2025-06-05 03:44:52] 2025-06-05 01:37:09,579 | INFO     | [job] retrieve thread has finished
[2025-06-05 03:44:52] 2025-06-05 01:37:09,597 | INFO     | [job] validate thread has finished
[2025-06-05 03:44:52] 2025-06-05 01:37:09,744 | INFO     | [job] job monitor thread has finished
[2025-06-05 03:44:52] 2025-06-05 01:37:09,803 | INFO     | [payload] failed_post thread has finished
[2025-06-05 03:44:52] 2025-06-05 01:37:09,863 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 03:44:52] 2025-06-05 01:37:09,864 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 03:44:52] 2025-06-05 01:37:09,866 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 03:44:52] 2025-06-05 01:37:09,930 | INFO     | [payload] control thread has finished
[2025-06-05 03:44:52] 2025-06-05 01:37:10,012 | INFO     | all job control threads have been joined
[2025-06-05 03:44:52] 2025-06-05 01:37:10,150 | INFO     | [data] control thread has finished
[2025-06-05 03:44:52] 2025-06-05 01:37:10,275 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 03:44:52] 2025-06-05 01:37:10,304 | INFO     | [data] copytool_in thread has finished
[2025-06-05 03:44:52] 2025-06-05 01:37:10,315 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 03:44:52] 2025-06-05 01:37:10,880 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 03:44:52] 2025-06-05 01:37:10,957 | INFO     | [payload] validate_post thread has finished
[2025-06-05 03:44:52] 2025-06-05 01:37:11,018 | INFO     | [job] control thread has finished
[2025-06-05 03:44:52] 2025-06-05 01:37:11,024 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 03:44:52] 2025-06-05 01:37:11,320 | INFO     | [job] queue monitor thread has finished
[2025-06-05 03:44:52] 2025-06-05 01:37:11,873 | INFO     | [data] copytool_out thread has finished
[2025-06-05 03:44:52] 2025-06-05 01:37:15,033 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 03:44:52] 2025-06-05 01:37:15,560 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140605177456448)>', '<ExcThread(monitor, started 140604604409600)>']
[2025-06-05 03:44:52] 2025-06-05 01:37:15,617 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 03:44:52] 2025-06-05 01:37:15,617 | INFO     | [monitor] control thread has ended
[2025-06-05 03:44:52] 2025-06-05 01:37:20,586 | INFO     | all workflow threads have been joined
[2025-06-05 03:44:52] 2025-06-05 01:37:20,586 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 03:44:52] 2025-06-05 01:37:20,587 | INFO     | traces error code: 0
[2025-06-05 03:44:52] 2025-06-05 01:37:20,587 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 03:44:52] 2025-06-05 01:37:20,893 [wrapper] ==== pilot stdout END ====
[2025-06-05 03:44:52] 2025-06-05 01:37:20,910 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 03:44:52] 2025-06-05 01:37:20,923 [wrapper] pilotpid: 17834
[2025-06-05 03:44:52] 2025-06-05 01:37:20,934 [wrapper] Pilot exit status: 0
[2025-06-05 03:44:52] 2025-06-05 01:37:20,965 [wrapper] pandaids: 6679367315
[2025-06-05 03:44:52] 2025-06-05 01:37:21,023 [wrapper] cleanup supervisor_pilot  2745 17835
[2025-06-05 03:44:52] 2025-06-05 01:37:21,147 [wrapper] Test setup, not cleaning
[2025-06-05 03:44:52] 2025-06-05 01:37:21,242 [wrapper] apfmon messages muted
[2025-06-05 03:44:52] 2025-06-05 01:37:21,346 [wrapper] ==== wrapper stdout END ====
[2025-06-05 03:44:52] 2025-06-05 01:37:21,481 [wrapper] ==== wrapper stderr END ====
[2025-06-05 03:44:52]  *** Error codes and diagnostics ***
[2025-06-05 03:44:52]     "exeErrorCode": 0,
[2025-06-05 03:44:52]     "exeErrorDiag": "",
[2025-06-05 03:44:52]     "pilotErrorCode": 0,
[2025-06-05 03:44:52]     "pilotErrorDiag": "",
[2025-06-05 03:44:52]  *** Listing of results directory ***
[2025-06-05 03:44:52] total 390236
[2025-06-05 03:44:52] -rw-r--r--. 1 boinc boinc    495897 Jun  4 10:46 pilot3.tar.gz
[2025-06-05 03:44:52] -rw-r--r--. 1 boinc boinc      5111 Jun  4 10:58 queuedata.json
[2025-06-05 03:44:52] -rwx------. 1 boinc boinc     37140 Jun  4 10:58 runpilot2-wrapper.sh
[2025-06-05 03:44:52] -rw-r--r--. 1 boinc boinc       100 Jun  4 23:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 03:44:52] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 23:39 run_atlas
[2025-06-05 03:44:52] -rw-r--r--. 1 boinc boinc       105 Jun  4 23:39 job.xml
[2025-06-05 03:44:52] -rw-r--r--. 1 boinc boinc      6390 Jun  4 23:39 init_data.xml
[2025-06-05 03:44:52] -rw-r--r--. 2 boinc boinc 214517686 Jun  4 23:39 EVNT.45006593._000786.pool.root.1
[2025-06-05 03:44:52] -rw-r--r--. 2 boinc boinc     15093 Jun  4 23:39 start_atlas.sh
[2025-06-05 03:44:52] drwxrwx--x. 2 boinc boinc        68 Jun  4 23:39 shared
[2025-06-05 03:44:52] -rw-r--r--. 2 boinc boinc    508879 Jun  4 23:39 input.tar.gz
[2025-06-05 03:44:52] -rw-r--r--. 1 boinc boinc         0 Jun  4 23:39 boinc_lockfile
[2025-06-05 03:44:52] -rw-r--r--. 1 boinc boinc      2524 Jun  4 23:39 pandaJob.out
[2025-06-05 03:44:52] -rw-------. 1 boinc boinc    987032 Jun  4 23:42 agis_schedconf.cvmfs.json
[2025-06-05 03:44:52] drwx------. 4 boinc boinc      4096 Jun  4 23:42 pilot3
[2025-06-05 03:44:52] -rw-------. 1 boinc boinc 178130187 Jun  5 03:34 HITS.45006595._056191.pool.root.1
[2025-06-05 03:44:52] -rw-r--r--. 1 boinc boinc       531 Jun  5 03:34 boinc_task_state.xml
[2025-06-05 03:44:52] -rw-------. 1 boinc boinc      1013 Jun  5 03:35 memory_monitor_summary.json
[2025-06-05 03:44:52] -rw-------. 1 boinc boinc   1598969 Jun  5 03:35 agis_ddmendpoints.agis.ALL.json
[2025-06-05 03:44:52] -rw-------. 1 boinc boinc    376988 Jun  5 03:35 log.45006595._056191.job.log.tgz.1
[2025-06-05 03:44:52] -rw-------. 1 boinc boinc        95 Jun  5 03:36 pilot_heartbeat.json
[2025-06-05 03:44:52] -rw-------. 1 boinc boinc      7682 Jun  5 03:37 heartbeat.json
[2025-06-05 03:44:52] -rw-------. 1 boinc boinc      4539 Jun  5 03:37 pilotlog.txt
[2025-06-05 03:44:52] -rw-------. 1 boinc boinc   1191806 Jun  5 03:37 log.45006595._056191.job.log.1
[2025-06-05 03:44:52] -rw-------. 1 boinc boinc       357 Jun  5 03:37 output.list
[2025-06-05 03:44:52] -rw-r--r--. 1 boinc boinc       620 Jun  5 03:37 runtime_log
[2025-06-05 03:44:52] -rw-------. 1 boinc boinc   1587200 Jun  5 03:37 result.tar.gz
[2025-06-05 03:44:52] -rw-------. 1 boinc boinc       656 Jun  5 03:37 sjSNDm17yg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmutnKDm0x55Fm.diag
[2025-06-05 03:44:52] -rw-r--r--. 1 boinc boinc      8659 Jun  5 03:37 runtime_log.err
[2025-06-05 03:44:52] -rw-r--r--. 1 boinc boinc      8192 Jun  5 03:44 boinc_mmap_file
[2025-06-05 03:44:52] -rw-r--r--. 1 boinc boinc        28 Jun  5 03:44 wrapper_checkpoint.txt
[2025-06-05 03:44:52] -rw-r--r--. 1 boinc boinc     20645 Jun  5 03:44 stderr.txt
[2025-06-05 03:44:52] HITS file was successfully produced:
[2025-06-05 03:44:52] -rw-------. 1 boinc boinc 178130187 Jun  5 03:34 shared/HITS.pool.root.1
[2025-06-05 03:44:52]  *** Contents of shared directory: ***
[2025-06-05 03:44:52] total 385516
[2025-06-05 03:44:52] -rw-r--r--. 2 boinc boinc 214517686 Jun  4 23:39 ATLAS.root_0
[2025-06-05 03:44:52] -rw-r--r--. 2 boinc boinc     15093 Jun  4 23:39 start_atlas.sh
[2025-06-05 03:44:52] -rw-r--r--. 2 boinc boinc    508879 Jun  4 23:39 input.tar.gz
[2025-06-05 03:44:52] -rw-------. 1 boinc boinc 178130187 Jun  5 03:34 HITS.pool.root.1
[2025-06-05 03:44:52] -rw-------. 1 boinc boinc   1587200 Jun  5 03:37 result.tar.gz
03:44:54 (8786): run_atlas exited; CPU time 50603.932209
03:44:54 (8786): called boinc_finish(0)

</stderr_txt>
]]>

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