Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:38:12 (827161): wrapper (7.7.26015): starting
02:38:12 (827161): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 02:38:12] Arguments: --nthreads 12
[2025-06-05 02:38:12] Threads: 12
[2025-06-05 02:38:12] Checking for CVMFS
[2025-06-05 02:38:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 02:38:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 02:38:12] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 02:38:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 02:38:12] 2.12.7.0 2877684 3123 94972 146799 1 56 3721094 4097025 0 130560 0 5126770 99.995 758620 7320 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-06-05 02:38:12] CVMFS is ok
[2025-06-05 02:38:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 02:38:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 02:38:12] Further information can be found at the LHC@home message board.
[2025-06-05 02:38:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 02:38:12] Checking for apptainer binary...
[2025-06-05 02:38:12] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-06-05 02:38:12] apptainer is not installed, using version from CVMFS
[2025-06-05 02:38:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 02:38:12] pckelar2.cern.ch
[2025-06-05 02:38:12] apptainer works
[2025-06-05 02:38:12] Set ATHENA_PROC_NUMBER=12
[2025-06-05 02:38:12] Set ATHENA_CORE_NUMBER=12
[2025-06-05 02:38:12] Starting ATLAS job with PandaID=6678977406
[2025-06-05 02:38:12] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 03:17:43]  *** The last 200 lines of the pilot log: ***
[2025-06-05 03:17:43]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-05 03:17:43]  is_altstaged=None
[2025-06-05 03:17:43]  is_tar=False
[2025-06-05 03:17:43]  lfn=log.45006595._055731.job.log.tgz.1
[2025-06-05 03:17:43]  mtime=0
[2025-06-05 03:17:43]  protocol_id=None
[2025-06-05 03:17:43]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-05 03:17:43]  replicas=None
[2025-06-05 03:17:43]  scope=mc23_13p6TeV
[2025-06-05 03:17:43]  status=None
[2025-06-05 03:17:43]  status_code=0
[2025-06-05 03:17:43]  storage_token=
[2025-06-05 03:17:43]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6678977406/log.45006595._055731.job.log.tgz.1
[2025-06-05 03:17:43]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/38/f0/log.45006595._055731.job.log.tgz.1
[2025-06-05 03:17:43]  workdir=None
[2025-06-05 03:17:43] ]
[2025-06-05 03:17:43] 2025-06-05 01:17:16,226 | INFO     | transferring file log.45006595._055731.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6678977406/log.45006595._055731.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-06-05 03:17:43] 2025-06-05 01:17:16,226 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6678977406/log.45006595._055731.job.log.tgz.1 /var/lib/boinc/slots/0/log.45006595._055731.job
[2025-06-05 03:17:43] 2025-06-05 01:17:16,237 | INFO     | adding to output.list: log.45006595._055731.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/38/f0/log.45006595._055731.job.log.tg
[2025-06-05 03:17:43] 2025-06-05 01:17:16,238 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 03:17:43] 2025-06-05 01:17:16,238 | INFO     | summary of transferred files:
[2025-06-05 03:17:43] 2025-06-05 01:17:16,238 | INFO     |  -- lfn=log.45006595._055731.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 03:17:43] 2025-06-05 01:17:16,238 | INFO     | stage-out finished correctly
[2025-06-05 03:17:43] 2025-06-05 01:17:18,270 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 03:17:43] 2025-06-05 01:17:20,590 | INFO     | job 6678977406 has state=finished
[2025-06-05 03:17:43] 2025-06-05 01:17:20,590 | INFO     | preparing for final server update for job 6678977406 in state='finished'
[2025-06-05 03:17:43] 2025-06-05 01:17:20,591 | INFO     | this job has now completed (state=finished)
[2025-06-05 03:17:43] 2025-06-05 01:17:20,591 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 03:17:43] 2025-06-05 01:17:20,591 | INFO     | log transfer has been attempted: DONE
[2025-06-05 03:17:43] 2025-06-05 01:17:20,591 | INFO     | job 6678977406 has finished - writing final server update
[2025-06-05 03:17:43] 2025-06-05 01:17:20,592 | INFO     | total number of processed events: 400 (read)
[2025-06-05 03:17:43] 2025-06-05 01:17:20,594 | INFO     | executing command: lscpu
[2025-06-05 03:17:43] 2025-06-05 01:17:20,619 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 03:17:43] 2025-06-05 01:17:22,073 | WARNING  | process 838187 can no longer be monitored (due to stat problems) - aborting
[2025-06-05 03:17:43] 2025-06-05 01:17:22,073 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6678977406/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 03:17:43] 2025-06-05 01:17:22,146 | INFO     | number of running child processes to parent process 838187: 1
[2025-06-05 03:17:43] 2025-06-05 01:17:22,146 | INFO     | maximum number of monitored processes: 6
[2025-06-05 03:17:43] 2025-06-05 01:17:24,649 | INFO     | monitor loop #183: job 0:6678977406 is in state 'finished'
[2025-06-05 03:17:43] 2025-06-05 01:17:24,649 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 03:17:43] 2025-06-05 01:17:24,694 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 03:17:43] 2025-06-05 01:17:24,694 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6678977406/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 03:17:43] 2025-06-05 01:17:24,694 | INFO     | extracted standard info from prmon json
[2025-06-05 03:17:43] 2025-06-05 01:17:24,694 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 03:17:43] 2025-06-05 01:17:24,694 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 03:17:43] 2025-06-05 01:17:24,695 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 03:17:43] 2025-06-05 01:17:24,695 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 03:17:43] 2025-06-05 01:17:24,696 | INFO     | fitting pss+swap vs Time
[2025-06-05 03:17:43] 2025-06-05 01:17:24,696 | INFO     | sum of square deviations: 9228080.0
[2025-06-05 03:17:43] 2025-06-05 01:17:24,696 | INFO     | sum of deviations: 229809814.00000003
[2025-06-05 03:17:43] 2025-06-05 01:17:24,696 | INFO     | mean x: 1749085142.0
[2025-06-05 03:17:43] 2025-06-05 01:17:24,696 | INFO     | mean y: 3134369.4838709678
[2025-06-05 03:17:43] 2025-06-05 01:17:24,696 | INFO     | -- intersect: -43554889743.13583
[2025-06-05 03:17:43] 2025-06-05 01:17:24,696 | INFO     | intersect: -43554889743.13583
[2025-06-05 03:17:43] 2025-06-05 01:17:24,696 | INFO     | chi2: 0.00011869051798918905
[2025-06-05 03:17:43] 2025-06-05 01:17:24,696 | INFO     | -- intersect: -43554889743.13583
[2025-06-05 03:17:43] 2025-06-05 01:17:24,696 | INFO     | current memory leak: 24.90 B/s (using 31 data points, chi2=0.00)
[2025-06-05 03:17:43] 2025-06-05 01:17:24,697 | INFO     | ..............................
[2025-06-05 03:17:43] 2025-06-05 01:17:24,697 | INFO     | . Timing measurements:
[2025-06-05 03:17:43] 2025-06-05 01:17:24,697 | INFO     | . get job = 0 s
[2025-06-05 03:17:43] 2025-06-05 01:17:24,697 | INFO     | . initial setup = 1 s
[2025-06-05 03:17:43] 2025-06-05 01:17:24,697 | INFO     | . payload setup = 5 s
[2025-06-05 03:17:43] 2025-06-05 01:17:24,697 | INFO     | . stage-in = 0 s
[2025-06-05 03:17:43] 2025-06-05 01:17:24,697 | INFO     | . payload execution = 2313 s
[2025-06-05 03:17:43] 2025-06-05 01:17:24,697 | INFO     | . stage-out = 0 s
[2025-06-05 03:17:43] 2025-06-05 01:17:24,697 | INFO     | . log creation = 0 s
[2025-06-05 03:17:43] 2025-06-05 01:17:24,697 | INFO     | ..............................
[2025-06-05 03:17:43] 2025-06-05 01:17:24,920 | INFO     | 
[2025-06-05 03:17:43] 2025-06-05 01:17:24,920 | INFO     | job summary report
[2025-06-05 03:17:43] 2025-06-05 01:17:24,920 | INFO     | --------------------------------------------------
[2025-06-05 03:17:43] 2025-06-05 01:17:24,920 | INFO     | PanDA job id: 6678977406
[2025-06-05 03:17:43] 2025-06-05 01:17:24,920 | INFO     | task id: 45006595
[2025-06-05 03:17:43] 2025-06-05 01:17:24,920 | INFO     | errors: (none)
[2025-06-05 03:17:43] 2025-06-05 01:17:24,920 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 03:17:43] 2025-06-05 01:17:24,920 | INFO     | pilot state: finished 
[2025-06-05 03:17:43] 2025-06-05 01:17:24,920 | INFO     | transexitcode: 0
[2025-06-05 03:17:43] 2025-06-05 01:17:24,920 | INFO     | exeerrorcode: 0
[2025-06-05 03:17:43] 2025-06-05 01:17:24,920 | INFO     | exeerrordiag: 
[2025-06-05 03:17:43] 2025-06-05 01:17:24,920 | INFO     | exitcode: 0
[2025-06-05 03:17:43] 2025-06-05 01:17:24,921 | INFO     | exitmsg: OK
[2025-06-05 03:17:43] 2025-06-05 01:17:24,921 | INFO     | cpuconsumptiontime: 25081 s
[2025-06-05 03:17:43] 2025-06-05 01:17:24,921 | INFO     | nevents: 400
[2025-06-05 03:17:43] 2025-06-05 01:17:24,921 | INFO     | neventsw: 0
[2025-06-05 03:17:43] 2025-06-05 01:17:24,921 | INFO     | pid: 838187
[2025-06-05 03:17:43] 2025-06-05 01:17:24,921 | INFO     | pgrp: 838187
[2025-06-05 03:17:43] 2025-06-05 01:17:24,921 | INFO     | corecount: 12
[2025-06-05 03:17:43] 2025-06-05 01:17:24,921 | INFO     | event service: False
[2025-06-05 03:17:43] 2025-06-05 01:17:24,921 | INFO     | sizes: {0: 2397290, 3: 2397496, 11: 2397524, 2322: 2422587, 2323: 2431583, 2325: 2431583, 2331: 2431881}
[2025-06-05 03:17:43] 2025-06-05 01:17:24,921 | INFO     | --------------------------------------------------
[2025-06-05 03:17:43] 2025-06-05 01:17:24,921 | INFO     | 
[2025-06-05 03:17:43] 2025-06-05 01:17:24,921 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-06-05 03:17:43] 2025-06-05 01:17:24,936 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 03:17:43] 2025-06-05 01:17:24,936 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 03:17:43] 2025-06-05 01:17:24,936 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 03:17:43] 2025-06-05 01:17:24,936 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 03:17:43] 2025-06-05 01:17:24,936 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 03:17:43] 2025-06-05 01:17:24,936 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 03:17:43] 2025-06-05 01:17:24,936 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 03:17:43] 2025-06-05 01:17:24,936 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 03:17:43] 2025-06-05 01:17:24,936 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 03:17:43] 2025-06-05 01:17:24,936 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 03:17:43] 2025-06-05 01:17:24,937 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 03:17:43] 2025-06-05 01:17:24,937 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 03:17:43] 2025-06-05 01:17:24,937 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 03:17:43] 2025-06-05 01:17:24,937 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 03:17:43] 2025-06-05 01:17:24,937 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 03:17:43] 2025-06-05 01:17:24,937 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 03:17:43] 2025-06-05 01:17:24,937 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 03:17:43] 2025-06-05 01:17:24,937 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 03:17:43] 2025-06-05 01:17:24,937 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 03:17:43] 2025-06-05 01:17:24,937 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 03:17:43] 2025-06-05 01:17:24,937 | INFO     | job 6678977406 has completed (purged errors)
[2025-06-05 03:17:43] 2025-06-05 01:17:24,937 | INFO     | overall cleanup function is called
[2025-06-05 03:17:43] 2025-06-05 01:17:25,944 | INFO     | --- collectZombieJob: --- 10, [838187]
[2025-06-05 03:17:43] 2025-06-05 01:17:25,944 | INFO     | zombie collector waiting for pid 838187
[2025-06-05 03:17:43] 2025-06-05 01:17:25,944 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 03:17:43] 2025-06-05 01:17:25,944 | INFO     | collected zombie processes
[2025-06-05 03:17:43] 2025-06-05 01:17:25,944 | INFO     | will attempt to kill all subprocesses of pid=838187
[2025-06-05 03:17:43] 2025-06-05 01:17:26,025 | INFO     | process IDs to be killed: [838187] (in reverse order)
[2025-06-05 03:17:43] 2025-06-05 01:17:26,057 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 03:17:43] 2025-06-05 01:17:26,057 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 03:17:43] 2025-06-05 01:17:26,059 | INFO     | did not find any defunct processes belonging to 838187
[2025-06-05 03:17:43] 2025-06-05 01:17:26,060 | INFO     | did not find any defunct processes belonging to 838187
[2025-06-05 03:17:43] 2025-06-05 01:17:26,060 | INFO     | ready for new job
[2025-06-05 03:17:43] 2025-06-05 01:17:26,060 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 03:17:43] 2025-06-05 01:17:26,062 | INFO     | **************************************
[2025-06-05 03:17:43] 2025-06-05 01:17:26,062 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 03:17:43] 2025-06-05 01:17:26,062 | INFO     | **************************************
[2025-06-05 03:17:43] 2025-06-05 01:17:26,062 | INFO     | 
[2025-06-05 03:17:43] 2025-06-05 01:17:26,063 | INFO     | architecture information:
[2025-06-05 03:17:43] 2025-06-05 01:17:26,063 | INFO     | executing command: cat /etc/os-release
[2025-06-05 03:17:43] 2025-06-05 01:17:26,072 | INFO     | cat /etc/os-release:
[2025-06-05 03:17:43] NAME="CentOS Linux"
[2025-06-05 03:17:43] VERSION="7 (Core)"
[2025-06-05 03:17:43] ID="centos"
[2025-06-05 03:17:43] ID_LIKE="rhel fedora"
[2025-06-05 03:17:43] VERSION_ID="7"
[2025-06-05 03:17:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 03:17:43] ANSI_COLOR="0;31"
[2025-06-05 03:17:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 03:17:43] HOME_URL="https://www.centos.org/"
[2025-06-05 03:17:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 03:17:43] 
[2025-06-05 03:17:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 03:17:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 03:17:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 03:17:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 03:17:43] 
[2025-06-05 03:17:43] 2025-06-05 01:17:26,072 | INFO     | **************************************
[2025-06-05 03:17:43] 2025-06-05 01:17:26,575 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-06-05 03:17:43] 2025-06-05 01:17:26,588 | INFO     | sufficient remaining disk space (234859003904 B)
[2025-06-05 03:17:43] 2025-06-05 01:17:26,588 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 03:17:43] 2025-06-05 01:17:26,588 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 03:17:43] 2025-06-05 01:17:26,588 | INFO     | update_server=False
[2025-06-05 03:17:43] 2025-06-05 01:17:26,588 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 03:17:43] 2025-06-05 01:17:26,588 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 03:17:43] 2025-06-05 01:17:26,589 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 03:17:43] 2025-06-05 01:17:26,589 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 03:17:43] 2025-06-05 01:17:26,589 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 03:17:43] 2025-06-05 01:17:26,590 | INFO     | aborting loop
[2025-06-05 03:17:43] 2025-06-05 01:17:26,590 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 03:17:43] 2025-06-05 01:17:26,590 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 03:17:43] 2025-06-05 01:17:26,795 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 03:17:43] 2025-06-05 01:17:27,041 | INFO     | all data control threads have been joined
[2025-06-05 03:17:43] 2025-06-05 01:17:27,448 | INFO     | all job control threads have been joined
[2025-06-05 03:17:43] 2025-06-05 01:17:27,593 | INFO     | [job] retrieve thread has finished
[2025-06-05 03:17:43] 2025-06-05 01:17:27,595 | INFO     | [job] queue monitor thread has finished
[2025-06-05 03:17:43] 2025-06-05 01:17:27,595 | INFO     | [job] job monitor thread has finished
[2025-06-05 03:17:43] 2025-06-05 01:17:27,936 | INFO     | all payload control threads have been joined
[2025-06-05 03:17:43] 2025-06-05 01:17:28,034 | INFO     | [payload] validate_post thread has finished
[2025-06-05 03:17:43] 2025-06-05 01:17:28,047 | INFO     | [data] control thread has finished
[2025-06-05 03:17:43] 2025-06-05 01:17:28,399 | INFO     | [payload] failed_post thread has finished
[2025-06-05 03:17:43] 2025-06-05 01:17:28,454 | INFO     | [job] control thread has finished
[2025-06-05 03:17:43] 2025-06-05 01:17:28,792 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 03:17:43] 2025-06-05 01:17:28,801 | INFO     | [data] copytool_out thread has finished
[2025-06-05 03:17:43] 2025-06-05 01:17:28,822 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 03:17:43] 2025-06-05 01:17:28,902 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 03:17:43] 2025-06-05 01:17:28,942 | INFO     | [payload] control thread has finished
[2025-06-05 03:17:43] 2025-06-05 01:17:28,977 | INFO     | [job] validate thread has finished
[2025-06-05 03:17:43] 2025-06-05 01:17:29,090 | INFO     | [data] copytool_in thread has finished
[2025-06-05 03:17:43] 2025-06-05 01:17:29,090 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 03:17:43] 2025-06-05 01:17:32,828 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 03:17:43] 2025-06-05 01:17:36,920 | INFO     | job.realtimelogging is not enabled
[2025-06-05 03:17:43] 2025-06-05 01:17:37,925 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 03:17:43] 2025-06-05 01:17:38,408 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140233138157376)>', '<ExcThread(monitor, started 140232586405632)>']
[2025-06-05 03:17:43] 2025-06-05 01:17:38,651 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 03:17:43] 2025-06-05 01:17:38,651 | INFO     | [monitor] control thread has ended
[2025-06-05 03:17:43] 2025-06-05 01:17:43,433 | INFO     | all workflow threads have been joined
[2025-06-05 03:17:43] 2025-06-05 01:17:43,433 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 03:17:43] 2025-06-05 01:17:43,434 | INFO     | traces error code: 0
[2025-06-05 03:17:43] 2025-06-05 01:17:43,434 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 03:17:43] 2025-06-05 01:17:43,505 [wrapper] ==== pilot stdout END ====
[2025-06-05 03:17:43] 2025-06-05 01:17:43,508 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 03:17:43] 2025-06-05 01:17:43,510 [wrapper] pilotpid: 830906
[2025-06-05 03:17:43] 2025-06-05 01:17:43,512 [wrapper] Pilot exit status: 0
[2025-06-05 03:17:43] 2025-06-05 01:17:43,520 [wrapper] pandaids: 6678977406
[2025-06-05 03:17:43] 2025-06-05 01:17:43,541 [wrapper] cleanup supervisor_pilot  848569 830907
[2025-06-05 03:17:43] 2025-06-05 01:17:43,543 [wrapper] Test setup, not cleaning
[2025-06-05 03:17:43] 2025-06-05 01:17:43,545 [wrapper] apfmon messages muted
[2025-06-05 03:17:43] 2025-06-05 01:17:43,547 [wrapper] ==== wrapper stdout END ====
[2025-06-05 03:17:43] 2025-06-05 01:17:43,549 [wrapper] ==== wrapper stderr END ====
[2025-06-05 03:17:43]  *** Error codes and diagnostics ***
[2025-06-05 03:17:43]     "exeErrorCode": 0,
[2025-06-05 03:17:43]     "exeErrorDiag": "",
[2025-06-05 03:17:43]     "pilotErrorCode": 0,
[2025-06-05 03:17:43]     "pilotErrorDiag": "",
[2025-06-05 03:17:43]  *** Listing of results directory ***
[2025-06-05 03:17:43] total 390888
[2025-06-05 03:17:43] -rw-r--r-- 1 boinc boinc    495897 Jun  4 10:31 pilot3.tar.gz
[2025-06-05 03:17:43] -rw-r--r-- 1 boinc boinc      5111 Jun  4 10:32 queuedata.json
[2025-06-05 03:17:43] -rwx------ 1 boinc boinc     37140 Jun  4 10:32 runpilot2-wrapper.sh
[2025-06-05 03:17:43] -rw-r--r-- 1 boinc boinc       100 Jun  5 02:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 03:17:43] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 02:38 run_atlas
[2025-06-05 03:17:43] -rw-r--r-- 1 boinc boinc       105 Jun  5 02:38 job.xml
[2025-06-05 03:17:43] -rw-r--r-- 2 boinc boinc     15093 Jun  5 02:38 start_atlas.sh
[2025-06-05 03:17:43] drwxrwx--x 2 boinc boinc        68 Jun  5 02:38 shared
[2025-06-05 03:17:43] -rw-r--r-- 2 boinc boinc    508882 Jun  5 02:38 input.tar.gz
[2025-06-05 03:17:43] -rw-r--r-- 1 boinc boinc      6471 Jun  5 02:38 init_data.xml
[2025-06-05 03:17:43] -rw-r--r-- 2 boinc boinc 215958412 Jun  5 02:38 EVNT.45006593._000809.pool.root.1
[2025-06-05 03:17:43] -rw-r--r-- 1 boinc boinc         0 Jun  5 02:38 boinc_lockfile
[2025-06-05 03:17:43] -rw-r--r-- 1 boinc boinc      2524 Jun  5 02:38 pandaJob.out
[2025-06-05 03:17:43] -rw------- 1 boinc boinc    987117 Jun  5 02:38 agis_schedconf.cvmfs.json
[2025-06-05 03:17:43] -rw------- 1 boinc boinc   1598969 Jun  5 02:38 agis_ddmendpoints.agis.ALL.json
[2025-06-05 03:17:43] drwx------ 4 boinc boinc      4096 Jun  5 02:38 pilot3
[2025-06-05 03:17:43] -rw------- 1 boinc boinc        95 Jun  5 03:16 pilot_heartbeat.json
[2025-06-05 03:17:43] -rw------- 1 boinc boinc 179281341 Jun  5 03:16 HITS.45006595._055731.pool.root.1
[2025-06-05 03:17:43] -rw------- 1 boinc boinc      1015 Jun  5 03:17 memory_monitor_summary.json
[2025-06-05 03:17:43] -rw-r--r-- 1 boinc boinc        27 Jun  5 03:17 wrapper_checkpoint.txt
[2025-06-05 03:17:43] -rw-r--r-- 1 boinc boinc       529 Jun  5 03:17 boinc_task_state.xml
[2025-06-05 03:17:43] -rw------- 1 boinc boinc    353710 Jun  5 03:17 log.45006595._055731.job.log.tgz.1
[2025-06-05 03:17:43] -rw------- 1 boinc boinc      7688 Jun  5 03:17 heartbeat.json
[2025-06-05 03:17:43] -rw-r--r-- 1 boinc boinc      8192 Jun  5 03:17 boinc_mmap_file
[2025-06-05 03:17:43] -rw------- 1 boinc boinc      4549 Jun  5 03:17 pilotlog.txt
[2025-06-05 03:17:43] -rw------- 1 boinc boinc    252491 Jun  5 03:17 log.45006595._055731.job.log.1
[2025-06-05 03:17:43] -rw------- 1 boinc boinc       357 Jun  5 03:17 output.list
[2025-06-05 03:17:43] -rw-r--r-- 1 boinc boinc       620 Jun  5 03:17 runtime_log
[2025-06-05 03:17:43] -rw------- 1 boinc boinc    624640 Jun  5 03:17 result.tar.gz
[2025-06-05 03:17:43] -rw------- 1 boinc boinc       653 Jun  5 03:17 vWPLDmYjyg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmtnnKDmxWw9ym.diag
[2025-06-05 03:17:43] -rw-r--r-- 1 boinc boinc      8683 Jun  5 03:17 runtime_log.err
[2025-06-05 03:17:43] -rw-r--r-- 1 boinc boinc     21454 Jun  5 03:17 stderr.txt
[2025-06-05 03:17:43] HITS file was successfully produced:
[2025-06-05 03:17:43] -rw------- 1 boinc boinc 179281341 Jun  5 03:16 shared/HITS.pool.root.1
[2025-06-05 03:17:43]  *** Contents of shared directory: ***
[2025-06-05 03:17:43] total 387108
[2025-06-05 03:17:43] -rw-r--r-- 2 boinc boinc     15093 Jun  5 02:38 start_atlas.sh
[2025-06-05 03:17:43] -rw-r--r-- 2 boinc boinc    508882 Jun  5 02:38 input.tar.gz
[2025-06-05 03:17:43] -rw-r--r-- 2 boinc boinc 215958412 Jun  5 02:38 ATLAS.root_0
[2025-06-05 03:17:43] -rw------- 1 boinc boinc 179281341 Jun  5 03:16 HITS.pool.root.1
[2025-06-05 03:17:43] -rw------- 1 boinc boinc    624640 Jun  5 03:17 result.tar.gz
03:17:44 (827161): run_atlas exited; CPU time 25077.871219
03:17:44 (827161): called boinc_finish(0)

</stderr_txt>
]]>

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