Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:05:43 (892777): wrapper (7.7.26015): starting
09:05:43 (892777): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 09:05:43] Arguments: --nthreads 8
[2025-06-04 09:05:43] Threads: 8
[2025-06-04 09:05:43] Checking for CVMFS
[2025-06-04 09:05:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 09:05:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 09:05:44] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 09:05:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 09:05:44] 2.12.6.0 46158 23808 407028 146780 2 712 27327840 40960000 49363 16776704 0 369306703 99.776 212922547 34096 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 09:05:44] CVMFS is ok
[2025-06-04 09:05:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 09:05:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 09:05:44] Further information can be found at the LHC@home message board.
[2025-06-04 09:05:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 09:05:44] Checking for apptainer binary...
[2025-06-04 09:05:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 09:05:44] Running /usr/bin/apptainer --version
[2025-06-04 09:05:44] apptainer version 1.4.1-1.el9
[2025-06-04 09:05:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 09:05:44] c8-6-11.aglt2.org
[2025-06-04 09:05:44] apptainer works
[2025-06-04 09:05:44] Set ATHENA_PROC_NUMBER=8
[2025-06-04 09:05:44] Set ATHENA_CORE_NUMBER=8
[2025-06-04 09:05:44] Starting ATLAS job with PandaID=6679023970
[2025-06-04 09:05:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 09:59:42]  *** The last 200 lines of the pilot log: ***
[2025-06-04 09:59:42]  is_altstaged=None
[2025-06-04 09:59:42]  is_tar=False
[2025-06-04 09:59:42]  lfn=log.45006595._055787.job.log.tgz.1
[2025-06-04 09:59:42]  mtime=0
[2025-06-04 09:59:42]  protocol_id=None
[2025-06-04 09:59:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 09:59:42]  replicas=None
[2025-06-04 09:59:42]  scope=mc23_13p6TeV
[2025-06-04 09:59:42]  status=None
[2025-06-04 09:59:42]  status_code=0
[2025-06-04 09:59:42]  storage_token=
[2025-06-04 09:59:42]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6679023970/log.45006595._055787.job.log.tgz.1
[2025-06-04 09:59:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/63/80/log.45006595._055787.job.log.tgz.1
[2025-06-04 09:59:42]  workdir=None
[2025-06-04 09:59:42] ]
[2025-06-04 09:59:42] 2025-06-04 13:59:11,420 | INFO     | transferring file log.45006595._055787.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6679023970/log.45006595._055787.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 09:59:42] 2025-06-04 13:59:11,421 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6679023970/log.45006595._055787.job.log.tgz.1 /tmp/boinchome/slots/1/log.45006595._055787.job
[2025-06-04 09:59:42] 2025-06-04 13:59:11,450 | INFO     | adding to output.list: log.45006595._055787.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/63/80/log.45006595._055787.job.log.tg
[2025-06-04 09:59:42] 2025-06-04 13:59:11,451 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 09:59:42] 2025-06-04 13:59:11,451 | INFO     | summary of transferred files:
[2025-06-04 09:59:42] 2025-06-04 13:59:11,451 | INFO     |  -- lfn=log.45006595._055787.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 09:59:42] 2025-06-04 13:59:11,451 | INFO     | stage-out finished correctly
[2025-06-04 09:59:42] 2025-06-04 13:59:13,737 | INFO     | monitor loop #225: job 0:6679023970 is in state 'finished'
[2025-06-04 09:59:42] 2025-06-04 13:59:13,738 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 09:59:42] 2025-06-04 13:59:14,678 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 09:59:42] 2025-06-04 13:59:15,953 | INFO     | job 6679023970 has state=finished
[2025-06-04 09:59:42] 2025-06-04 13:59:15,953 | INFO     | preparing for final server update for job 6679023970 in state='finished'
[2025-06-04 09:59:42] 2025-06-04 13:59:15,953 | INFO     | this job has now completed (state=finished)
[2025-06-04 09:59:42] 2025-06-04 13:59:15,953 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 09:59:42] 2025-06-04 13:59:15,954 | INFO     | log transfer has been attempted: DONE
[2025-06-04 09:59:42] 2025-06-04 13:59:15,954 | INFO     | job 6679023970 has finished - writing final server update
[2025-06-04 09:59:42] 2025-06-04 13:59:15,954 | INFO     | total number of processed events: 400 (read)
[2025-06-04 09:59:42] 2025-06-04 13:59:15,960 | INFO     | executing command: lscpu
[2025-06-04 09:59:42] 2025-06-04 13:59:16,036 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 09:59:42] 2025-06-04 13:59:16,241 | INFO     | monitor loop #226: job 0:6679023970 is in state 'finished'
[2025-06-04 09:59:42] 2025-06-04 13:59:16,242 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 09:59:42] 2025-06-04 13:59:18,745 | INFO     | monitor loop #227: job 0:6679023970 is in state 'finished'
[2025-06-04 09:59:42] 2025-06-04 13:59:18,746 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 09:59:42] 2025-06-04 13:59:21,056 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 09:59:42] 2025-06-04 13:59:21,057 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6679023970/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:59:42] 2025-06-04 13:59:21,058 | INFO     | extracted standard info from prmon json
[2025-06-04 09:59:42] 2025-06-04 13:59:21,058 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 09:59:42] 2025-06-04 13:59:21,058 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 09:59:42] 2025-06-04 13:59:21,058 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 09:59:42] 2025-06-04 13:59:21,058 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 09:59:42] 2025-06-04 13:59:21,059 | INFO     | fitting pss+swap vs Time
[2025-06-04 09:59:42] 2025-06-04 13:59:21,060 | INFO     | sum of square deviations: 28242390.0
[2025-06-04 09:59:42] 2025-06-04 13:59:21,060 | INFO     | sum of deviations: 5256662738.999999
[2025-06-04 09:59:42] 2025-06-04 13:59:21,060 | INFO     | mean x: 1749044030.0
[2025-06-04 09:59:42] 2025-06-04 13:59:21,060 | INFO     | mean y: 2392203.8
[2025-06-04 09:59:42] 2025-06-04 13:59:21,060 | INFO     | -- intersect: -325541394330.2503
[2025-06-04 09:59:42] 2025-06-04 13:59:21,060 | INFO     | intersect: -325541394330.2503
[2025-06-04 09:59:42] 2025-06-04 13:59:21,060 | INFO     | chi2: 0.6928447619735788
[2025-06-04 09:59:42] 2025-06-04 13:59:21,060 | INFO     | -- intersect: -325541394330.2503
[2025-06-04 09:59:42] 2025-06-04 13:59:21,060 | INFO     | current memory leak: 186.13 B/s (using 45 data points, chi2=0.69)
[2025-06-04 09:59:42] 2025-06-04 13:59:21,060 | INFO     | ..............................
[2025-06-04 09:59:42] 2025-06-04 13:59:21,060 | INFO     | . Timing measurements:
[2025-06-04 09:59:42] 2025-06-04 13:59:21,061 | INFO     | . get job = 0 s
[2025-06-04 09:59:42] 2025-06-04 13:59:21,061 | INFO     | . initial setup = 2 s
[2025-06-04 09:59:42] 2025-06-04 13:59:21,061 | INFO     | . payload setup = 6 s
[2025-06-04 09:59:42] 2025-06-04 13:59:21,061 | INFO     | . stage-in = 0 s
[2025-06-04 09:59:42] 2025-06-04 13:59:21,061 | INFO     | . payload execution = 3169 s
[2025-06-04 09:59:42] 2025-06-04 13:59:21,061 | INFO     | . stage-out = 0 s
[2025-06-04 09:59:42] 2025-06-04 13:59:21,061 | INFO     | . log creation = 0 s
[2025-06-04 09:59:42] 2025-06-04 13:59:21,061 | INFO     | ..............................
[2025-06-04 09:59:42] 2025-06-04 13:59:21,120 | INFO     | 
[2025-06-04 09:59:42] 2025-06-04 13:59:21,120 | INFO     | job summary report
[2025-06-04 09:59:42] 2025-06-04 13:59:21,120 | INFO     | --------------------------------------------------
[2025-06-04 09:59:42] 2025-06-04 13:59:21,120 | INFO     | PanDA job id: 6679023970
[2025-06-04 09:59:42] 2025-06-04 13:59:21,120 | INFO     | task id: 45006595
[2025-06-04 09:59:42] 2025-06-04 13:59:21,121 | INFO     | errors: (none)
[2025-06-04 09:59:42] 2025-06-04 13:59:21,121 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 09:59:42] 2025-06-04 13:59:21,121 | INFO     | pilot state: finished 
[2025-06-04 09:59:42] 2025-06-04 13:59:21,121 | INFO     | transexitcode: 0
[2025-06-04 09:59:42] 2025-06-04 13:59:21,121 | INFO     | exeerrorcode: 0
[2025-06-04 09:59:42] 2025-06-04 13:59:21,121 | INFO     | exeerrordiag: 
[2025-06-04 09:59:42] 2025-06-04 13:59:21,121 | INFO     | exitcode: 0
[2025-06-04 09:59:42] 2025-06-04 13:59:21,121 | INFO     | exitmsg: OK
[2025-06-04 09:59:42] 2025-06-04 13:59:21,121 | INFO     | cpuconsumptiontime: 20033 s
[2025-06-04 09:59:42] 2025-06-04 13:59:21,121 | INFO     | nevents: 400
[2025-06-04 09:59:42] 2025-06-04 13:59:21,121 | INFO     | neventsw: 0
[2025-06-04 09:59:42] 2025-06-04 13:59:21,121 | INFO     | pid: 916801
[2025-06-04 09:59:42] 2025-06-04 13:59:21,121 | INFO     | pgrp: 916801
[2025-06-04 09:59:42] 2025-06-04 13:59:21,121 | INFO     | corecount: 8
[2025-06-04 09:59:42] 2025-06-04 13:59:21,121 | INFO     | event service: False
[2025-06-04 09:59:42] 2025-06-04 13:59:21,121 | INFO     | sizes: {0: 2397292, 5: 2397498, 11: 2397554, 3180: 2423206, 3181: 2432147, 3184: 2432203, 3190: 2432501}
[2025-06-04 09:59:42] 2025-06-04 13:59:21,121 | INFO     | --------------------------------------------------
[2025-06-04 09:59:42] 2025-06-04 13:59:21,121 | INFO     | 
[2025-06-04 09:59:42] 2025-06-04 13:59:21,121 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-04 09:59:42] 2025-06-04 13:59:21,142 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 09:59:42] 2025-06-04 13:59:21,142 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 09:59:42] 2025-06-04 13:59:21,143 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 09:59:42] 2025-06-04 13:59:21,143 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 09:59:42] 2025-06-04 13:59:21,143 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 09:59:42] 2025-06-04 13:59:21,143 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 09:59:42] 2025-06-04 13:59:21,143 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 09:59:42] 2025-06-04 13:59:21,143 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 09:59:42] 2025-06-04 13:59:21,143 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 09:59:42] 2025-06-04 13:59:21,143 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 09:59:42] 2025-06-04 13:59:21,143 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 09:59:42] 2025-06-04 13:59:21,143 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 09:59:42] 2025-06-04 13:59:21,143 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 09:59:42] 2025-06-04 13:59:21,143 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 09:59:42] 2025-06-04 13:59:21,143 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 09:59:42] 2025-06-04 13:59:21,143 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 09:59:42] 2025-06-04 13:59:21,143 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 09:59:42] 2025-06-04 13:59:21,143 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 09:59:42] 2025-06-04 13:59:21,143 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 09:59:42] 2025-06-04 13:59:21,143 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 09:59:42] 2025-06-04 13:59:21,143 | INFO     | job 6679023970 has completed (purged errors)
[2025-06-04 09:59:42] 2025-06-04 13:59:21,144 | INFO     | overall cleanup function is called
[2025-06-04 09:59:42] 2025-06-04 13:59:22,150 | INFO     | --- collectZombieJob: --- 10, [916801]
[2025-06-04 09:59:42] 2025-06-04 13:59:22,151 | INFO     | zombie collector waiting for pid 916801
[2025-06-04 09:59:42] 2025-06-04 13:59:22,151 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 09:59:42] 2025-06-04 13:59:22,151 | INFO     | collected zombie processes
[2025-06-04 09:59:42] 2025-06-04 13:59:22,151 | INFO     | will attempt to kill all subprocesses of pid=916801
[2025-06-04 09:59:42] 2025-06-04 13:59:22,708 | INFO     | process IDs to be killed: [916801] (in reverse order)
[2025-06-04 09:59:42] 2025-06-04 13:59:22,915 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 09:59:42] 2025-06-04 13:59:22,916 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 09:59:42] 2025-06-04 13:59:22,947 | INFO     | did not find any defunct processes belonging to 916801
[2025-06-04 09:59:42] 2025-06-04 13:59:22,978 | INFO     | did not find any defunct processes belonging to 916801
[2025-06-04 09:59:42] 2025-06-04 13:59:22,978 | INFO     | ready for new job
[2025-06-04 09:59:42] 2025-06-04 13:59:22,978 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 09:59:42] 2025-06-04 13:59:22,979 | INFO     | **************************************
[2025-06-04 09:59:42] 2025-06-04 13:59:22,979 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 09:59:42] 2025-06-04 13:59:22,979 | INFO     | **************************************
[2025-06-04 09:59:42] 2025-06-04 13:59:22,979 | INFO     | 
[2025-06-04 09:59:42] 2025-06-04 13:59:22,984 | INFO     | architecture information:
[2025-06-04 09:59:42] 2025-06-04 13:59:22,984 | INFO     | executing command: cat /etc/os-release
[2025-06-04 09:59:42] 2025-06-04 13:59:23,000 | INFO     | cat /etc/os-release:
[2025-06-04 09:59:42] NAME="CentOS Linux"
[2025-06-04 09:59:42] VERSION="7 (Core)"
[2025-06-04 09:59:42] ID="centos"
[2025-06-04 09:59:42] ID_LIKE="rhel fedora"
[2025-06-04 09:59:42] VERSION_ID="7"
[2025-06-04 09:59:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 09:59:42] ANSI_COLOR="0;31"
[2025-06-04 09:59:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 09:59:42] HOME_URL="https://www.centos.org/"
[2025-06-04 09:59:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 09:59:42] 
[2025-06-04 09:59:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 09:59:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 09:59:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 09:59:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 09:59:42] 
[2025-06-04 09:59:42] 2025-06-04 13:59:23,001 | INFO     | **************************************
[2025-06-04 09:59:42] 2025-06-04 13:59:23,503 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-04 09:59:42] 2025-06-04 13:59:23,533 | INFO     | sufficient remaining disk space (171948638208 B)
[2025-06-04 09:59:42] 2025-06-04 13:59:23,533 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 09:59:42] 2025-06-04 13:59:23,533 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 09:59:42] 2025-06-04 13:59:23,534 | INFO     | update_server=False
[2025-06-04 09:59:42] 2025-06-04 13:59:23,534 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 09:59:42] 2025-06-04 13:59:23,700 | INFO     | all payload control threads have been joined
[2025-06-04 09:59:42] 2025-06-04 13:59:23,756 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 09:59:42] 2025-06-04 13:59:23,757 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 09:59:42] 2025-06-04 13:59:23,757 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:59:42] 2025-06-04 13:59:23,757 | INFO     | will abort loop
[2025-06-04 09:59:42] 2025-06-04 13:59:23,758 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 09:59:42] 2025-06-04 13:59:23,759 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 09:59:42] 2025-06-04 13:59:23,759 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 09:59:42] 2025-06-04 13:59:24,311 | INFO     | all job control threads have been joined
[2025-06-04 09:59:42] 2025-06-04 13:59:24,432 | INFO     | all data control threads have been joined
[2025-06-04 09:59:42] 2025-06-04 13:59:24,526 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 09:59:42] 2025-06-04 13:59:24,539 | INFO     | [job] retrieve thread has finished
[2025-06-04 09:59:42] 2025-06-04 13:59:24,706 | INFO     | [payload] control thread has finished
[2025-06-04 09:59:42] 2025-06-04 13:59:24,721 | INFO     | [payload] validate_post thread has finished
[2025-06-04 09:59:42] 2025-06-04 13:59:24,762 | INFO     | [job] job monitor thread has finished
[2025-06-04 09:59:42] 2025-06-04 13:59:24,963 | INFO     | [payload] failed_post thread has finished
[2025-06-04 09:59:42] 2025-06-04 13:59:25,247 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 09:59:42] 2025-06-04 13:59:25,317 | INFO     | [job] control thread has finished
[2025-06-04 09:59:42] 2025-06-04 13:59:25,360 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 09:59:42] 2025-06-04 13:59:25,366 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 09:59:42] 2025-06-04 13:59:25,437 | INFO     | [data] control thread has finished
[2025-06-04 09:59:42] 2025-06-04 13:59:25,562 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 09:59:42] 2025-06-04 13:59:25,573 | INFO     | [data] copytool_in thread has finished
[2025-06-04 09:59:42] 2025-06-04 13:59:25,898 | INFO     | [job] validate thread has finished
[2025-06-04 09:59:42] 2025-06-04 13:59:26,131 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:59:42] 2025-06-04 13:59:26,532 | INFO     | [data] copytool_out thread has finished
[2025-06-04 09:59:42] 2025-06-04 13:59:27,137 | INFO     | [job] queue monitor thread has finished
[2025-06-04 09:59:42] 2025-06-04 13:59:29,257 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 09:59:42] 2025-06-04 13:59:34,443 | INFO     | job.realtimelogging is not enabled
[2025-06-04 09:59:42] 2025-06-04 13:59:35,449 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 09:59:42] 2025-06-04 13:59:36,478 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139998378596160)>', '<ExcThread(monitor, started 139997747345152)>']
[2025-06-04 09:59:42] 2025-06-04 13:59:36,832 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 09:59:42] 2025-06-04 13:59:36,833 | INFO     | [monitor] control thread has ended
[2025-06-04 09:59:42] 2025-06-04 13:59:41,504 | INFO     | all workflow threads have been joined
[2025-06-04 09:59:42] 2025-06-04 13:59:41,505 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 09:59:42] 2025-06-04 13:59:41,505 | INFO     | traces error code: 0
[2025-06-04 09:59:42] 2025-06-04 13:59:41,505 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 09:59:42] 2025-06-04 13:59:41,706 [wrapper] ==== pilot stdout END ====
[2025-06-04 09:59:42] 2025-06-04 13:59:41,711 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 09:59:42] 2025-06-04 13:59:41,714 [wrapper] pilotpid: 899411
[2025-06-04 09:59:42] 2025-06-04 13:59:41,717 [wrapper] Pilot exit status: 0
[2025-06-04 09:59:42] 2025-06-04 13:59:41,728 [wrapper] pandaids: 6679023970
[2025-06-04 09:59:42] 2025-06-04 13:59:41,890 [wrapper] cleanup supervisor_pilot 1836463 899412
[2025-06-04 09:59:42] 2025-06-04 13:59:41,894 [wrapper] Test setup, not cleaning
[2025-06-04 09:59:42] 2025-06-04 13:59:41,897 [wrapper] apfmon messages muted
[2025-06-04 09:59:42] 2025-06-04 13:59:41,901 [wrapper] ==== wrapper stdout END ====
[2025-06-04 09:59:42] 2025-06-04 13:59:41,903 [wrapper] ==== wrapper stderr END ====
[2025-06-04 09:59:42]  *** Error codes and diagnostics ***
[2025-06-04 09:59:42]     "exeErrorCode": 0,
[2025-06-04 09:59:42]     "exeErrorDiag": "",
[2025-06-04 09:59:42]     "pilotErrorCode": 0,
[2025-06-04 09:59:42]     "pilotErrorDiag": "",
[2025-06-04 09:59:42]  *** Listing of results directory ***
[2025-06-04 09:59:42] total 390948
[2025-06-04 09:59:42] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 04:31 pilot3.tar.gz
[2025-06-04 09:59:42] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 04:43 queuedata.json
[2025-06-04 09:59:42] -rwx------. 1 boincer umatlas     37140 Jun  4 04:44 runpilot2-wrapper.sh
[2025-06-04 09:59:42] -rw-r--r--. 1 boincer umatlas       100 Jun  4 09:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 09:59:42] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 09:05 run_atlas
[2025-06-04 09:59:42] -rw-r--r--. 1 boincer umatlas       105 Jun  4 09:05 job.xml
[2025-06-04 09:59:42] -rw-r--r--. 2 boincer umatlas 217054167 Jun  4 09:05 EVNT.45006593._001178.pool.root.1
[2025-06-04 09:59:42] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 09:05 start_atlas.sh
[2025-06-04 09:59:42] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 09:05 shared
[2025-06-04 09:59:42] -rw-r--r--. 2 boincer umatlas    508884 Jun  4 09:05 input.tar.gz
[2025-06-04 09:59:42] -rw-r--r--. 1 boincer umatlas         0 Jun  4 09:05 boinc_lockfile
[2025-06-04 09:59:42] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 09:05 pandaJob.out
[2025-06-04 09:59:42] -rw-------. 1 boincer umatlas    986811 Jun  4 09:05 agis_schedconf.cvmfs.json
[2025-06-04 09:59:42] -rw-------. 1 boincer umatlas   1598969 Jun  4 09:05 agis_ddmendpoints.agis.ALL.json
[2025-06-04 09:59:42] drwx------. 4 boincer umatlas      4096 Jun  4 09:05 pilot3
[2025-06-04 09:59:42] -rw-r--r--. 1 boincer umatlas      7159 Jun  4 09:56 init_data.xml
[2025-06-04 09:59:42] -rw-------. 1 boincer umatlas        95 Jun  4 09:58 pilot_heartbeat.json
[2025-06-04 09:59:42] -rw-r--r--. 1 boincer umatlas       529 Jun  4 09:58 boinc_task_state.xml
[2025-06-04 09:59:42] -rw-------. 1 boincer umatlas 178219726 Jun  4 09:58 HITS.45006595._055787.pool.root.1
[2025-06-04 09:59:42] -rw-------. 1 boincer umatlas      1047 Jun  4 09:59 memory_monitor_summary.json
[2025-06-04 09:59:42] -rw-------. 1 boincer umatlas    280973 Jun  4 09:59 log.45006595._055787.job.log.tgz.1
[2025-06-04 09:59:42] -rw-------. 1 boincer umatlas      7714 Jun  4 09:59 heartbeat.json
[2025-06-04 09:59:42] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 09:59 boinc_mmap_file
[2025-06-04 09:59:42] -rw-------. 1 boincer umatlas      4612 Jun  4 09:59 pilotlog.txt
[2025-06-04 09:59:42] -rw-r--r--. 1 boincer umatlas        27 Jun  4 09:59 wrapper_checkpoint.txt
[2025-06-04 09:59:42] -rw-------. 1 boincer umatlas    329809 Jun  4 09:59 log.45006595._055787.job.log.1
[2025-06-04 09:59:42] -rw-------. 1 boincer umatlas       357 Jun  4 09:59 output.list
[2025-06-04 09:59:42] -rw-r--r--. 1 boincer umatlas       620 Jun  4 09:59 runtime_log
[2025-06-04 09:59:42] -rw-------. 1 boincer umatlas    634880 Jun  4 09:59 result.tar.gz
[2025-06-04 09:59:42] -rw-------. 1 boincer umatlas       655 Jun  4 09:59 wFALDmzuyg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmUonKDmfU3KPo.diag
[2025-06-04 09:59:42] -rw-r--r--. 1 boincer umatlas      8654 Jun  4 09:59 runtime_log.err
[2025-06-04 09:59:42] -rw-r--r--. 1 boincer umatlas     21354 Jun  4 09:59 stderr.txt
[2025-06-04 09:59:42] HITS file was successfully produced:
[2025-06-04 09:59:42] -rw-------. 1 boincer umatlas 178219726 Jun  4 09:58 shared/HITS.pool.root.1
[2025-06-04 09:59:42]  *** Contents of shared directory: ***
[2025-06-04 09:59:42] total 387156
[2025-06-04 09:59:42] -rw-r--r--. 2 boincer umatlas 217054167 Jun  4 09:05 ATLAS.root_0
[2025-06-04 09:59:42] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 09:05 start_atlas.sh
[2025-06-04 09:59:42] -rw-r--r--. 2 boincer umatlas    508884 Jun  4 09:05 input.tar.gz
[2025-06-04 09:59:42] -rw-------. 1 boincer umatlas 178219726 Jun  4 09:58 HITS.pool.root.1
[2025-06-04 09:59:42] -rw-------. 1 boincer umatlas    634880 Jun  4 09:59 result.tar.gz
09:59:43 (892777): run_atlas exited; CPU time 20135.699014
09:59:43 (892777): called boinc_finish(0)

</stderr_txt>
]]>

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