Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:22:55 (3618842): wrapper (7.7.26015): starting
23:22:55 (3618842): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 23:22:55] Arguments: --nthreads 12
[2025-06-04 23:22:55] Threads: 12
[2025-06-04 23:22:55] Checking for CVMFS
[2025-06-04 23:22:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 23:22:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 23:22:56] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 23:22:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 23:22:57] 2.12.7.0 9267 8062 165500 146795 0 228 32839121 46080001 38211 130560 0 57991991 99.950 10485261 29737 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-06-04 23:22:57] CVMFS is ok
[2025-06-04 23:22:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 23:22:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 23:22:57] Further information can be found at the LHC@home message board.
[2025-06-04 23:22:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 23:22:57] Checking for apptainer binary...
[2025-06-04 23:22:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 23:22:57] Running /usr/bin/apptainer --version
[2025-06-04 23:22:57] apptainer version 1.4.1-1.el9
[2025-06-04 23:22:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 23:22:58] mff2103.farm.particle.cz
[2025-06-04 23:22:58] apptainer works
[2025-06-04 23:22:58] Set ATHENA_PROC_NUMBER=12
[2025-06-04 23:22:58] Set ATHENA_CORE_NUMBER=12
[2025-06-04 23:22:58] Starting ATLAS job with PandaID=6678364387
[2025-06-04 23:22:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 01:20:35]  *** The last 200 lines of the pilot log: ***
[2025-06-05 01:20:35] 2025-06-04 23:15:56,412 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 01:20:35] 2025-06-04 23:15:56,412 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 01:20:35] 2025-06-04 23:15:56,412 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 01:20:35] 2025-06-04 23:15:56,412 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 01:20:35] 2025-06-04 23:15:56,419 | INFO     | fitting pss+swap vs Time
[2025-06-05 01:20:35] 2025-06-04 23:15:56,419 | INFO     | sum of square deviations: 379844447.8691581
[2025-06-05 01:20:35] 2025-06-04 23:15:56,420 | INFO     | sum of deviations: 39087698564.14017
[2025-06-05 01:20:35] 2025-06-04 23:15:56,420 | INFO     | mean x: 1749075657.1028037
[2025-06-05 01:20:35] 2025-06-04 23:15:56,420 | INFO     | mean y: 2524001.5327102803
[2025-06-05 01:20:35] 2025-06-04 23:15:56,420 | INFO     | -- intersect: -179985211594.53876
[2025-06-05 01:20:35] 2025-06-04 23:15:56,420 | INFO     | intersect: -179985211594.53876
[2025-06-05 01:20:35] 2025-06-04 23:15:56,421 | INFO     | chi2: 5.712870822246071
[2025-06-05 01:20:35] 2025-06-04 23:15:56,421 | INFO     | sum of square deviations: 329046850.3137257
[2025-06-05 01:20:35] 2025-06-04 23:15:56,421 | INFO     | sum of deviations: 44008153965.21565
[2025-06-05 01:20:35] 2025-06-04 23:15:56,421 | INFO     | mean x: 1749075504.6078432
[2025-06-05 01:20:35] 2025-06-04 23:15:56,422 | INFO     | mean y: 2537949.4803921566
[2025-06-05 01:20:35] 2025-06-04 23:15:56,422 | INFO     | -- intersect: -233926411773.57486
[2025-06-05 01:20:35] 2025-06-04 23:15:56,422 | INFO     | intersect: -233926411773.57486
[2025-06-05 01:20:35] 2025-06-04 23:15:56,422 | INFO     | chi2: 5.076468143520565
[2025-06-05 01:20:35] 2025-06-04 23:15:56,422 | INFO     | current chi2=5.076468143520565 (change=11.139805161484425 %)
[2025-06-05 01:20:35] 2025-06-04 23:15:56,422 | INFO     | right removable region: 101
[2025-06-05 01:20:35] 2025-06-04 23:15:56,422 | INFO     | sum of square deviations: 329040140.3137257
[2025-06-05 01:20:35] 2025-06-04 23:15:56,423 | INFO     | sum of deviations: 3088442476.0980415
[2025-06-05 01:20:35] 2025-06-04 23:15:56,423 | INFO     | mean x: 1749075809.6078432
[2025-06-05 01:20:35] 2025-06-04 23:15:56,423 | INFO     | mean y: 2631883.6274509802
[2025-06-05 01:20:35] 2025-06-04 23:15:56,423 | INFO     | -- intersect: -16414574902.018623
[2025-06-05 01:20:35] 2025-06-04 23:15:56,423 | INFO     | intersect: -16414574902.018623
[2025-06-05 01:20:35] 2025-06-04 23:15:56,424 | INFO     | chi2: 1.3309071446938985
[2025-06-05 01:20:35] 2025-06-04 23:15:56,424 | INFO     | current chi2=1.3309071446938985 (change=76.70335657667401 %)
[2025-06-05 01:20:35] 2025-06-04 23:15:56,424 | INFO     | sum of square deviations: 282980107.7525766
[2025-06-05 01:20:35] 2025-06-04 23:15:56,428 | INFO     | sum of deviations: -8708375678.443298
[2025-06-05 01:20:35] 2025-06-04 23:15:56,429 | INFO     | mean x: 1749075962.1134021
[2025-06-05 01:20:35] 2025-06-04 23:15:56,429 | INFO     | mean y: 2670355.494845361
[2025-06-05 01:20:35] 2025-06-04 23:15:56,429 | INFO     | -- intersect: 53828399270.46122
[2025-06-05 01:20:35] 2025-06-04 23:15:56,429 | INFO     | intersect: 53828399270.46122
[2025-06-05 01:20:35] 2025-06-04 23:15:56,429 | INFO     | chi2: 0.7345715740846233
[2025-06-05 01:20:35] 2025-06-04 23:15:56,429 | INFO     | current chi2=0.7345715740846233 (change=44.8066999254429 %)
[2025-06-05 01:20:35] 2025-06-04 23:15:56,429 | INFO     | sum of square deviations: 241431787.68478242
[2025-06-05 01:20:35] 2025-06-04 23:15:56,430 | INFO     | sum of deviations: -7953914659.456523
[2025-06-05 01:20:35] 2025-06-04 23:15:56,430 | INFO     | mean x: 1749076114.6195652
[2025-06-05 01:20:35] 2025-06-04 23:15:56,430 | INFO     | mean y: 2667541.586956522
[2025-06-05 01:20:35] 2025-06-04 23:15:56,430 | INFO     | -- intersect: 57625577440.84832
[2025-06-05 01:20:35] 2025-06-04 23:15:56,430 | INFO     | intersect: 57625577440.84832
[2025-06-05 01:20:35] 2025-06-04 23:15:56,430 | INFO     | chi2: 0.7347786123559977
[2025-06-05 01:20:35] 2025-06-04 23:15:56,431 | INFO     | current chi2=0.7347786123559977 (change=-0.028184901060522145 %)
[2025-06-05 01:20:35] 2025-06-04 23:15:56,431 | INFO     | left removable region: 30
[2025-06-05 01:20:35] 2025-06-04 23:15:56,431 | INFO     | sum of square deviations: 110961082.59154947
[2025-06-05 01:20:35] 2025-06-04 23:15:56,431 | INFO     | sum of deviations: -812707917.9014083
[2025-06-05 01:20:35] 2025-06-04 23:15:56,431 | INFO     | mean x: 1749076389.140845
[2025-06-05 01:20:35] 2025-06-04 23:15:56,431 | INFO     | mean y: 2687430.6901408453
[2025-06-05 01:20:35] 2025-06-04 23:15:56,431 | INFO     | -- intersect: 12813379227.035564
[2025-06-05 01:20:35] 2025-06-04 23:15:56,432 | INFO     | intersect: 12813379227.035564
[2025-06-05 01:20:35] 2025-06-04 23:15:56,432 | INFO     | chi2: 0.002298957785886983
[2025-06-05 01:20:35] 2025-06-04 23:15:56,432 | INFO     | -- intersect: 12813379227.035564
[2025-06-05 01:20:35] 2025-06-04 23:15:56,432 | INFO     | current memory leak: -7.32 B/s (using 71 data points, chi2=0.00)
[2025-06-05 01:20:35] 2025-06-04 23:15:56,436 | INFO     | ..............................
[2025-06-05 01:20:35] 2025-06-04 23:15:56,436 | INFO     | . Timing measurements:
[2025-06-05 01:20:35] 2025-06-04 23:15:56,436 | INFO     | . get job = 0 s
[2025-06-05 01:20:35] 2025-06-04 23:15:56,436 | INFO     | . initial setup = 3 s
[2025-06-05 01:20:35] 2025-06-04 23:15:56,436 | INFO     | . payload setup = 58 s
[2025-06-05 01:20:35] 2025-06-04 23:15:56,446 | INFO     | . stage-in = 0 s
[2025-06-05 01:20:35] 2025-06-04 23:15:56,446 | INFO     | . payload execution = 6508 s
[2025-06-05 01:20:35] 2025-06-04 23:15:56,446 | INFO     | . stage-out = 2 s
[2025-06-05 01:20:35] 2025-06-04 23:15:56,447 | INFO     | . log creation = 0 s
[2025-06-05 01:20:35] 2025-06-04 23:15:56,447 | INFO     | ..............................
[2025-06-05 01:20:35] 2025-06-04 23:15:56,943 | INFO     | 
[2025-06-05 01:20:35] 2025-06-04 23:15:56,944 | INFO     | job summary report
[2025-06-05 01:20:35] 2025-06-04 23:15:56,944 | INFO     | --------------------------------------------------
[2025-06-05 01:20:35] 2025-06-04 23:15:56,944 | INFO     | PanDA job id: 6678364387
[2025-06-05 01:20:35] 2025-06-04 23:15:56,944 | INFO     | task id: 45006595
[2025-06-05 01:20:35] 2025-06-04 23:15:56,944 | INFO     | errors: (none)
[2025-06-05 01:20:35] 2025-06-04 23:15:56,944 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 01:20:35] 2025-06-04 23:15:56,944 | INFO     | pilot state: finished 
[2025-06-05 01:20:35] 2025-06-04 23:15:56,944 | INFO     | transexitcode: 0
[2025-06-05 01:20:35] 2025-06-04 23:15:56,944 | INFO     | exeerrorcode: 0
[2025-06-05 01:20:35] 2025-06-04 23:15:56,944 | INFO     | exeerrordiag: 
[2025-06-05 01:20:35] 2025-06-04 23:15:56,944 | INFO     | exitcode: 0
[2025-06-05 01:20:35] 2025-06-04 23:15:56,944 | INFO     | exitmsg: OK
[2025-06-05 01:20:35] 2025-06-04 23:15:56,944 | INFO     | cpuconsumptiontime: 34304 s
[2025-06-05 01:20:35] 2025-06-04 23:15:56,945 | INFO     | nevents: 400
[2025-06-05 01:20:35] 2025-06-04 23:15:56,945 | INFO     | neventsw: 0
[2025-06-05 01:20:35] 2025-06-04 23:15:56,945 | INFO     | pid: 3750315
[2025-06-05 01:20:35] 2025-06-04 23:15:56,945 | INFO     | pgrp: 3750315
[2025-06-05 01:20:35] 2025-06-04 23:15:56,945 | INFO     | corecount: 12
[2025-06-05 01:20:35] 2025-06-04 23:15:56,945 | INFO     | event service: False
[2025-06-05 01:20:35] 2025-06-04 23:15:56,945 | INFO     | sizes: {0: 2397172, 1: 2397371, 12: 2397371, 22: 2397399, 33: 2397427, 35: 2397689, 44: 2397845, 6571: 2424696, 6575: 2433639, 6578: 2433695, 6628: 2433865}
[2025-06-05 01:20:35] 2025-06-04 23:15:56,945 | INFO     | --------------------------------------------------
[2025-06-05 01:20:35] 2025-06-04 23:15:56,945 | INFO     | 
[2025-06-05 01:20:35] 2025-06-04 23:15:56,945 | INFO     | executing command: ls -lF /scratch/.boinc/slots/4
[2025-06-05 01:20:35] 2025-06-04 23:15:57,134 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 01:20:35] 2025-06-04 23:15:57,135 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 01:20:35] 2025-06-04 23:15:57,135 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 01:20:35] 2025-06-04 23:15:57,135 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 01:20:35] 2025-06-04 23:15:57,135 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 01:20:35] 2025-06-04 23:15:57,135 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 01:20:35] 2025-06-04 23:15:57,135 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 01:20:35] 2025-06-04 23:15:57,135 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 01:20:35] 2025-06-04 23:15:57,135 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 01:20:35] 2025-06-04 23:15:57,135 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 01:20:35] 2025-06-04 23:15:57,135 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 01:20:35] 2025-06-04 23:15:57,135 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 01:20:35] 2025-06-04 23:15:57,135 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 01:20:35] 2025-06-04 23:15:57,135 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 01:20:35] 2025-06-04 23:15:57,136 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 01:20:35] 2025-06-04 23:15:57,136 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 01:20:35] 2025-06-04 23:15:57,136 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 01:20:35] 2025-06-04 23:15:57,136 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 01:20:35] 2025-06-04 23:15:57,136 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 01:20:35] 2025-06-04 23:15:57,136 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 01:20:35] 2025-06-04 23:15:57,136 | INFO     | job 6678364387 has completed (purged errors)
[2025-06-05 01:20:35] 2025-06-04 23:15:57,136 | INFO     | overall cleanup function is called
[2025-06-05 01:20:35] 2025-06-04 23:15:58,162 | INFO     | --- collectZombieJob: --- 10, [3750315]
[2025-06-05 01:20:35] 2025-06-04 23:15:58,162 | INFO     | zombie collector waiting for pid 3750315
[2025-06-05 01:20:35] 2025-06-04 23:15:58,163 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 01:20:35] 2025-06-04 23:15:58,163 | INFO     | collected zombie processes
[2025-06-05 01:20:35] 2025-06-04 23:15:58,163 | INFO     | will attempt to kill all subprocesses of pid=3750315
[2025-06-05 01:20:35] 2025-06-04 23:15:58,446 | INFO     | PID=3659646 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-05 01:20:35] 2025-06-04 23:15:58,446 | INFO     | .. there are 102 such processes running
[2025-06-05 01:20:35] 2025-06-04 23:15:59,498 | INFO     | process IDs to be killed: [3750315] (in reverse order)
[2025-06-05 01:20:35] 2025-06-04 23:16:00,146 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 01:20:35] 2025-06-04 23:16:00,146 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 01:20:35] 2025-06-04 23:16:00,222 | INFO     | did not find any defunct processes belonging to 3750315
[2025-06-05 01:20:35] 2025-06-04 23:16:00,300 | INFO     | did not find any defunct processes belonging to 3750315
[2025-06-05 01:20:35] 2025-06-04 23:16:00,301 | INFO     | ready for new job
[2025-06-05 01:20:35] 2025-06-04 23:16:00,301 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 01:20:35] 2025-06-04 23:16:00,311 | INFO     | **************************************
[2025-06-05 01:20:35] 2025-06-04 23:16:00,311 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 01:20:35] 2025-06-04 23:16:00,311 | INFO     | **************************************
[2025-06-05 01:20:35] 2025-06-04 23:16:00,311 | INFO     | 
[2025-06-05 01:20:35] 2025-06-04 23:16:00,321 | INFO     | architecture information:
[2025-06-05 01:20:35] 2025-06-04 23:16:00,330 | INFO     | executing command: cat /etc/os-release
[2025-06-05 01:20:35] 2025-06-04 23:16:00,468 | INFO     | cat /etc/os-release:
[2025-06-05 01:20:35] NAME="CentOS Linux"
[2025-06-05 01:20:35] VERSION="7 (Core)"
[2025-06-05 01:20:35] ID="centos"
[2025-06-05 01:20:35] ID_LIKE="rhel fedora"
[2025-06-05 01:20:35] VERSION_ID="7"
[2025-06-05 01:20:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 01:20:35] ANSI_COLOR="0;31"
[2025-06-05 01:20:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 01:20:35] HOME_URL="https://www.centos.org/"
[2025-06-05 01:20:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 01:20:35] 
[2025-06-05 01:20:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 01:20:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 01:20:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 01:20:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 01:20:35] 
[2025-06-05 01:20:35] 2025-06-04 23:16:00,468 | INFO     | **************************************
[2025-06-05 01:20:35] 2025-06-04 23:16:00,971 | INFO     | executing command: df -mP /scratch/.boinc/slots/4
[2025-06-05 01:20:35] 2025-06-04 23:16:01,125 | INFO     | sufficient remaining disk space (1679644688384 B)
[2025-06-05 01:20:35] 2025-06-04 23:16:01,125 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 01:20:35] 2025-06-04 23:16:01,125 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 01:20:35] 2025-06-04 23:16:01,126 | INFO     | update_server=False
[2025-06-05 01:20:35] 2025-06-04 23:16:01,126 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 01:20:35] 2025-06-04 23:16:01,127 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 01:20:35] 2025-06-04 23:16:01,128 | INFO     | aborting loop
[2025-06-05 01:20:35] 2025-06-04 23:16:01,128 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 01:20:35] 2025-06-04 23:16:01,129 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 01:20:35] 2025-06-04 23:16:01,129 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 01:20:35] 2025-06-04 23:16:01,129 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 01:20:35] 2025-06-04 23:16:01,798 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 01:20:35] 2025-06-04 23:16:01,799 | INFO     | all data control threads have been joined
[2025-06-05 01:20:35] 2025-06-04 23:16:01,882 | INFO     | all payload control threads have been joined
[2025-06-05 01:20:35] 2025-06-04 23:16:01,923 | INFO     | all job control threads have been joined
[2025-06-05 01:20:35] 2025-06-04 23:16:02,132 | INFO     | [job] job monitor thread has finished
[2025-06-05 01:20:35] 2025-06-04 23:16:02,138 | INFO     | [job] retrieve thread has finished
[2025-06-05 01:20:35] 2025-06-04 23:16:02,245 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 01:20:35] 2025-06-04 23:16:02,412 | INFO     | [job] validate thread has finished
[2025-06-05 01:20:35] 2025-06-04 23:16:02,644 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 01:20:35] 2025-06-04 23:16:02,706 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 01:20:35] 2025-06-04 23:16:02,806 | INFO     | [job] queue monitor thread has finished
[2025-06-05 01:20:35] 2025-06-04 23:16:02,810 | INFO     | [data] control thread has finished
[2025-06-05 01:20:35] 2025-06-04 23:16:02,859 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 01:20:35] 2025-06-04 23:16:02,888 | INFO     | [payload] control thread has finished
[2025-06-05 01:20:35] 2025-06-04 23:16:02,928 | INFO     | [job] control thread has finished
[2025-06-05 01:20:35] 2025-06-04 23:16:02,966 | INFO     | [payload] validate_post thread has finished
[2025-06-05 01:20:35] 2025-06-04 23:16:03,052 | INFO     | [payload] failed_post thread has finished
[2025-06-05 01:20:35] 2025-06-04 23:16:03,100 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 01:20:35] 2025-06-04 23:16:03,151 | INFO     | [data] copytool_in thread has finished
[2025-06-05 01:20:35] 2025-06-04 23:16:03,169 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 01:20:35] 2025-06-04 23:16:04,252 | INFO     | [data] copytool_out thread has finished
[2025-06-05 01:20:35] 2025-06-04 23:16:06,871 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 01:20:35] 2025-06-04 23:16:08,542 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139784480122688)>', '<ExcThread(monitor, started 139783837824768)>']
[2025-06-05 01:20:35] 2025-06-04 23:16:09,179 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 01:20:35] 2025-06-04 23:16:09,182 | INFO     | [monitor] control thread has ended
[2025-06-05 01:20:35] 2025-06-04 23:16:13,568 | INFO     | all workflow threads have been joined
[2025-06-05 01:20:35] 2025-06-04 23:16:13,569 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 01:20:35] 2025-06-04 23:16:13,569 | INFO     | traces error code: 0
[2025-06-05 01:20:35] 2025-06-04 23:16:13,569 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 01:20:35] 2025-06-04 23:16:13,953 [wrapper] ==== pilot stdout END ====
[2025-06-05 01:20:35] 2025-06-04 23:16:13,996 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 01:20:35] 2025-06-04 23:16:14,045 [wrapper] pilotpid: 3659646
[2025-06-05 01:20:35] 2025-06-04 23:16:14,096 [wrapper] Pilot exit status: 0
[2025-06-05 01:20:35] 2025-06-04 23:16:14,273 [wrapper] pandaids: 6678364387
[2025-06-05 01:20:35] 2025-06-04 23:16:14,682 [wrapper] cleanup supervisor_pilot  621235 3659647
[2025-06-05 01:20:35] 2025-06-04 23:16:14,731 [wrapper] Test setup, not cleaning
[2025-06-05 01:20:35] 2025-06-04 23:16:14,780 [wrapper] apfmon messages muted
[2025-06-05 01:20:35] 2025-06-04 23:16:14,805 [wrapper] ==== wrapper stdout END ====
[2025-06-05 01:20:35] 2025-06-04 23:16:14,843 [wrapper] ==== wrapper stderr END ====
[2025-06-05 01:20:35]  *** Error codes and diagnostics ***
[2025-06-05 01:20:35]     "exeErrorCode": 0,
[2025-06-05 01:20:35]     "exeErrorDiag": "",
[2025-06-05 01:20:35]     "pilotErrorCode": 0,
[2025-06-05 01:20:35]     "pilotErrorDiag": "",
[2025-06-05 01:20:35]  *** Listing of results directory ***
[2025-06-05 01:20:35] total 387996
[2025-06-05 01:20:35] -rw-r--r-- 1 boinc boinc    495897 Jun  4 07:59 pilot3.tar.gz
[2025-06-05 01:20:35] -rw-r--r-- 1 boinc boinc      5111 Jun  4 08:23 queuedata.json
[2025-06-05 01:20:35] -rwx------ 1 boinc boinc     37140 Jun  4 08:23 runpilot2-wrapper.sh
[2025-06-05 01:20:35] -rw-r--r-- 1 boinc boinc       100 Jun  4 23:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 01:20:35] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 23:22 run_atlas
[2025-06-05 01:20:35] -rw-r--r-- 1 boinc boinc       105 Jun  4 23:22 job.xml
[2025-06-05 01:20:35] -rw-r--r-- 2 boinc boinc 213800995 Jun  4 23:22 EVNT.45006593._002157.pool.root.1
[2025-06-05 01:20:35] -rw-r--r-- 1 boinc boinc      6664 Jun  4 23:22 init_data.xml
[2025-06-05 01:20:35] -rw-r--r-- 2 boinc boinc     15093 Jun  4 23:22 start_atlas.sh
[2025-06-05 01:20:35] drwxrwx--x 2 boinc boinc      4096 Jun  4 23:22 shared
[2025-06-05 01:20:35] -rw-r--r-- 2 boinc boinc    508880 Jun  4 23:22 input.tar.gz
[2025-06-05 01:20:35] -rw-r--r-- 1 boinc boinc         0 Jun  4 23:22 boinc_lockfile
[2025-06-05 01:20:35] -rw-r--r-- 1 boinc boinc      2525 Jun  4 23:22 pandaJob.out
[2025-06-05 01:20:35] -rw------- 1 boinc boinc    987032 Jun  4 23:24 agis_schedconf.cvmfs.json
[2025-06-05 01:20:35] -rw------- 1 boinc boinc   1598969 Jun  4 23:24 agis_ddmendpoints.agis.ALL.json
[2025-06-05 01:20:35] drwx------ 4 boinc boinc      4096 Jun  4 23:24 pilot3
[2025-06-05 01:20:35] -rw------- 1 boinc boinc 177785408 Jun  5 01:13 HITS.45006595._053887.pool.root.1
[2025-06-05 01:20:35] -rw-r--r-- 1 boinc boinc       528 Jun  5 01:14 boinc_task_state.xml
[2025-06-05 01:20:35] -rw------- 1 boinc boinc      1025 Jun  5 01:14 memory_monitor_summary.json
[2025-06-05 01:20:35] -rw------- 1 boinc boinc    369381 Jun  5 01:15 log.45006595._053887.job.log.tgz.1
[2025-06-05 01:20:35] -rw------- 1 boinc boinc        95 Jun  5 01:15 pilot_heartbeat.json
[2025-06-05 01:20:35] -rw------- 1 boinc boinc      7695 Jun  5 01:15 heartbeat.json
[2025-06-05 01:20:35] -rw------- 1 boinc boinc      4479 Jun  5 01:16 pilotlog.txt
[2025-06-05 01:20:35] -rw------- 1 boinc boinc    574856 Jun  5 01:16 log.45006595._053887.job.log.1
[2025-06-05 01:20:35] -rw------- 1 boinc boinc       357 Jun  5 01:16 output.list
[2025-06-05 01:20:35] -rw-r--r-- 1 boinc boinc       620 Jun  5 01:16 runtime_log
[2025-06-05 01:20:35] -rw------- 1 boinc boinc    962560 Jun  5 01:16 result.tar.gz
[2025-06-05 01:20:35] -rw-r--r-- 1 boinc boinc      8720 Jun  5 01:16 runtime_log.err
[2025-06-05 01:20:35] -rw------- 1 boinc boinc       663 Jun  5 01:16 J8MKDmxhwg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmnSnKDmhIhBzm.diag
[2025-06-05 01:20:35] -rw-r--r-- 1 boinc boinc        26 Jun  5 01:20 wrapper_checkpoint.txt
[2025-06-05 01:20:35] -rw-r--r-- 1 boinc boinc      8192 Jun  5 01:20 boinc_mmap_file
[2025-06-05 01:20:35] -rw-r--r-- 1 boinc boinc     21070 Jun  5 01:20 stderr.txt
[2025-06-05 01:20:36] HITS file was successfully produced:
[2025-06-05 01:20:36] -rw------- 1 boinc boinc 177785408 Jun  5 01:13 shared/HITS.pool.root.1
[2025-06-05 01:20:36]  *** Contents of shared directory: ***
[2025-06-05 01:20:36] total 383876
[2025-06-05 01:20:36] -rw-r--r-- 2 boinc boinc 213800995 Jun  4 23:22 ATLAS.root_0
[2025-06-05 01:20:36] -rw-r--r-- 2 boinc boinc     15093 Jun  4 23:22 start_atlas.sh
[2025-06-05 01:20:36] -rw-r--r-- 2 boinc boinc    508880 Jun  4 23:22 input.tar.gz
[2025-06-05 01:20:36] -rw------- 1 boinc boinc 177785408 Jun  5 01:13 HITS.pool.root.1
[2025-06-05 01:20:36] -rw------- 1 boinc boinc    962560 Jun  5 01:16 result.tar.gz
01:20:37 (3618842): run_atlas exited; CPU time 34706.680199
01:20:37 (3618842): called boinc_finish(0)

</stderr_txt>
]]>

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