Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:09:45 (3765054): wrapper (7.7.26015): starting
18:09:45 (3765054): wrapper: running run_atlas (--nthreads 4)
[2025-06-06 18:09:45] Arguments: --nthreads 4
[2025-06-06 18:09:45] Threads: 4
[2025-06-06 18:09:45] Checking for CVMFS
[2025-06-06 18:09:45] No cvmfs_config command found, will try listing directly
[2025-06-06 18:09:45] CVMFS is ok
[2025-06-06 18:09:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 18:09:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 18:09:45] Further information can be found at the LHC@home message board.
[2025-06-06 18:09:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 18:09:45] Checking for apptainer binary...
[2025-06-06 18:09:45] which: no apptainer in ((null))
[2025-06-06 18:09:45] apptainer is not installed, using version from CVMFS
[2025-06-06 18:09:45] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 18:09:45] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2025-06-06 18:09:45] apptainer works
[2025-06-06 18:09:45] Set ATHENA_PROC_NUMBER=4
[2025-06-06 18:09:45] Set ATHENA_CORE_NUMBER=4
[2025-06-06 18:09:45] Starting ATLAS job with PandaID=6679207835
[2025-06-06 18:09:45] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 19:26:17]  *** The last 200 lines of the pilot log: ***
[2025-06-06 19:26:17]  protocol_id=None
[2025-06-06 19:26:17]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 19:26:17]  replicas=None
[2025-06-06 19:26:17]  scope=mc23_13p6TeV
[2025-06-06 19:26:17]  status=None
[2025-06-06 19:26:17]  status_code=0
[2025-06-06 19:26:17]  storage_token=
[2025-06-06 19:26:17]  surl=/scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6679207835/log.45006595._056000.job.log.tgz.1
[2025-06-06 19:26:17]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/67/16/log.45006595._056000.job.log.tgz.1
[2025-06-06 19:26:17]  workdir=None
[2025-06-06 19:26:17] ]
[2025-06-06 19:26:17] 2025-06-06 17:25:50,425 | INFO     | transferring file log.45006595._056000.job.log.tgz.1 from /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6679207835/log.45006595._056000.job.log.tgz.1 to /scratch/b
[2025-06-06 19:26:17] 2025-06-06 17:25:50,426 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6679207835/log.45006595._056000.job.log.tgz.1 /scratch/boinc/var/slot60/slots/0/lo
[2025-06-06 19:26:17] 2025-06-06 17:25:50,441 | INFO     | adding to output.list: log.45006595._056000.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/67/16/log.45006595._056000.job.log.tg
[2025-06-06 19:26:17] 2025-06-06 17:25:50,441 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 19:26:17] 2025-06-06 17:25:50,441 | INFO     | summary of transferred files:
[2025-06-06 19:26:17] 2025-06-06 17:25:50,442 | INFO     |  -- lfn=log.45006595._056000.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 19:26:17] 2025-06-06 17:25:50,442 | INFO     | stage-out finished correctly
[2025-06-06 19:26:17] 2025-06-06 17:25:50,522 | INFO     | monitor loop #338: job 0:6679207835 is in state 'finished'
[2025-06-06 19:26:17] 2025-06-06 17:25:50,522 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 19:26:17] 2025-06-06 17:25:51,546 | INFO     | PID=3768963 has CPU usage=9.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-06 19:26:17] 2025-06-06 17:25:51,547 | INFO     | .. there are 3 such processes running
[2025-06-06 19:26:17] 2025-06-06 17:25:52,412 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 19:26:17] 2025-06-06 17:25:53,025 | INFO     | monitor loop #339: job 0:6679207835 is in state 'finished'
[2025-06-06 19:26:17] 2025-06-06 17:25:53,025 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 19:26:17] 2025-06-06 17:25:53,961 | INFO     | job 6679207835 has state=finished
[2025-06-06 19:26:17] 2025-06-06 17:25:53,962 | INFO     | preparing for final server update for job 6679207835 in state='finished'
[2025-06-06 19:26:17] 2025-06-06 17:25:54,527 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-06-06 19:26:17] 2025-06-06 17:25:54,527 | INFO     | this job has now completed (state=finished)
[2025-06-06 19:26:17] 2025-06-06 17:25:54,527 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 19:26:17] 2025-06-06 17:25:54,527 | INFO     | log transfer has been attempted: DONE
[2025-06-06 19:26:17] 2025-06-06 17:25:54,527 | INFO     | job 6679207835 has finished - writing final server update
[2025-06-06 19:26:17] 2025-06-06 17:25:54,527 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3505766/.job.ad'
[2025-06-06 19:26:17] 2025-06-06 17:25:54,527 | INFO     | total number of processed events: 400 (read)
[2025-06-06 19:26:17] 2025-06-06 17:25:54,533 | INFO     | executing command: lscpu
[2025-06-06 19:26:17] 2025-06-06 17:25:54,600 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 19:26:17] 2025-06-06 17:25:55,529 | INFO     | monitor loop #340: job 0:6679207835 is in state 'finished'
[2025-06-06 19:26:17] 2025-06-06 17:25:55,529 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 19:26:17] 2025-06-06 17:25:58,032 | INFO     | monitor loop #341: job 0:6679207835 is in state 'finished'
[2025-06-06 19:26:17] 2025-06-06 17:25:58,032 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 19:26:17] 2025-06-06 17:25:58,638 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-06 19:26:17] 2025-06-06 17:25:58,638 | INFO     | using path: /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6679207835/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 19:26:17] 2025-06-06 17:25:58,638 | INFO     | extracted standard info from prmon json
[2025-06-06 19:26:17] 2025-06-06 17:25:58,639 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 19:26:17] 2025-06-06 17:25:58,639 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 19:26:17] 2025-06-06 17:25:58,639 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 19:26:17] 2025-06-06 17:25:58,639 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 19:26:17] 2025-06-06 17:25:58,640 | INFO     | fitting pss+swap vs Time
[2025-06-06 19:26:17] 2025-06-06 17:25:58,640 | INFO     | sum of square deviations: 97479037.0
[2025-06-06 19:26:17] 2025-06-06 17:25:58,640 | INFO     | sum of deviations: 799164690.5000001
[2025-06-06 19:26:17] 2025-06-06 17:25:58,641 | INFO     | mean x: 1749228565.5
[2025-06-06 19:26:17] 2025-06-06 17:25:58,641 | INFO     | mean y: 2335856.132352941
[2025-06-06 19:26:17] 2025-06-06 17:25:58,641 | INFO     | -- intersect: -14338405991.384737
[2025-06-06 19:26:17] 2025-06-06 17:25:58,641 | INFO     | intersect: -14338405991.384737
[2025-06-06 19:26:17] 2025-06-06 17:25:58,641 | INFO     | chi2: 0.0005007811266980145
[2025-06-06 19:26:17] 2025-06-06 17:25:58,641 | INFO     | -- intersect: -14338405991.384737
[2025-06-06 19:26:17] 2025-06-06 17:25:58,641 | INFO     | current memory leak: 8.20 B/s (using 68 data points, chi2=0.00)
[2025-06-06 19:26:17] 2025-06-06 17:25:58,641 | INFO     | ..............................
[2025-06-06 19:26:17] 2025-06-06 17:25:58,641 | INFO     | . Timing measurements:
[2025-06-06 19:26:17] 2025-06-06 17:25:58,641 | INFO     | . get job = 0 s
[2025-06-06 19:26:17] 2025-06-06 17:25:58,641 | INFO     | . initial setup = 1 s
[2025-06-06 19:26:17] 2025-06-06 17:25:58,641 | INFO     | . payload setup = 5 s
[2025-06-06 19:26:17] 2025-06-06 17:25:58,641 | INFO     | . stage-in = 0 s
[2025-06-06 19:26:17] 2025-06-06 17:25:58,641 | INFO     | . payload execution = 4533 s
[2025-06-06 19:26:17] 2025-06-06 17:25:58,641 | INFO     | . stage-out = 0 s
[2025-06-06 19:26:17] 2025-06-06 17:25:58,641 | INFO     | . log creation = 0 s
[2025-06-06 19:26:17] 2025-06-06 17:25:58,641 | INFO     | ..............................
[2025-06-06 19:26:17] 2025-06-06 17:25:58,697 | INFO     | 
[2025-06-06 19:26:17] 2025-06-06 17:25:58,698 | INFO     | job summary report
[2025-06-06 19:26:17] 2025-06-06 17:25:58,698 | INFO     | --------------------------------------------------
[2025-06-06 19:26:17] 2025-06-06 17:25:58,698 | INFO     | PanDA job id: 6679207835
[2025-06-06 19:26:17] 2025-06-06 17:25:58,698 | INFO     | task id: 45006595
[2025-06-06 19:26:17] 2025-06-06 17:25:58,698 | INFO     | errors: (none)
[2025-06-06 19:26:17] 2025-06-06 17:25:58,698 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 19:26:17] 2025-06-06 17:25:58,698 | INFO     | pilot state: finished 
[2025-06-06 19:26:17] 2025-06-06 17:25:58,698 | INFO     | transexitcode: 0
[2025-06-06 19:26:17] 2025-06-06 17:25:58,698 | INFO     | exeerrorcode: 0
[2025-06-06 19:26:17] 2025-06-06 17:25:58,698 | INFO     | exeerrordiag: 
[2025-06-06 19:26:17] 2025-06-06 17:25:58,698 | INFO     | exitcode: 0
[2025-06-06 19:26:17] 2025-06-06 17:25:58,698 | INFO     | exitmsg: OK
[2025-06-06 19:26:17] 2025-06-06 17:25:58,699 | INFO     | cpuconsumptiontime: 17397 s
[2025-06-06 19:26:17] 2025-06-06 17:25:58,699 | INFO     | nevents: 400
[2025-06-06 19:26:17] 2025-06-06 17:25:58,699 | INFO     | neventsw: 0
[2025-06-06 19:26:17] 2025-06-06 17:25:58,699 | INFO     | pid: 3776896
[2025-06-06 19:26:17] 2025-06-06 17:25:58,699 | INFO     | pgrp: 3776896
[2025-06-06 19:26:17] 2025-06-06 17:25:58,699 | INFO     | corecount: 4
[2025-06-06 19:26:17] 2025-06-06 17:25:58,699 | INFO     | event service: False
[2025-06-06 19:26:17] 2025-06-06 17:25:58,699 | INFO     | sizes: {0: 2397303, 4: 2397509, 11: 2397537, 4542: 2423667, 4543: 2432630, 4545: 2432686, 4551: 2432984}
[2025-06-06 19:26:17] 2025-06-06 17:25:58,699 | INFO     | --------------------------------------------------
[2025-06-06 19:26:17] 2025-06-06 17:25:58,699 | INFO     | 
[2025-06-06 19:26:17] 2025-06-06 17:25:58,699 | INFO     | executing command: ls -lF /scratch/boinc/var/slot60/slots/0
[2025-06-06 19:26:17] 2025-06-06 17:25:58,716 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 19:26:17] 2025-06-06 17:25:58,716 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 19:26:17] 2025-06-06 17:25:58,716 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 19:26:17] 2025-06-06 17:25:58,716 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 19:26:17] 2025-06-06 17:25:58,716 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 19:26:17] 2025-06-06 17:25:58,716 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 19:26:17] 2025-06-06 17:25:58,716 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 19:26:17] 2025-06-06 17:25:58,716 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 19:26:17] 2025-06-06 17:25:58,716 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 19:26:17] 2025-06-06 17:25:58,716 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 19:26:17] 2025-06-06 17:25:58,716 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 19:26:17] 2025-06-06 17:25:58,716 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 19:26:17] 2025-06-06 17:25:58,716 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 19:26:17] 2025-06-06 17:25:58,716 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 19:26:17] 2025-06-06 17:25:58,716 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 19:26:17] 2025-06-06 17:25:58,717 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 19:26:17] 2025-06-06 17:25:58,717 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 19:26:17] 2025-06-06 17:25:58,717 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 19:26:17] 2025-06-06 17:25:58,717 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 19:26:17] 2025-06-06 17:25:58,717 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 19:26:17] 2025-06-06 17:25:58,717 | INFO     | job 6679207835 has completed (purged errors)
[2025-06-06 19:26:17] 2025-06-06 17:25:58,717 | INFO     | overall cleanup function is called
[2025-06-06 19:26:17] 2025-06-06 17:25:59,724 | INFO     | --- collectZombieJob: --- 10, [3776896]
[2025-06-06 19:26:17] 2025-06-06 17:25:59,724 | INFO     | zombie collector waiting for pid 3776896
[2025-06-06 19:26:17] 2025-06-06 17:25:59,724 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 19:26:17] 2025-06-06 17:25:59,725 | INFO     | collected zombie processes
[2025-06-06 19:26:17] 2025-06-06 17:25:59,725 | INFO     | will attempt to kill all subprocesses of pid=3776896
[2025-06-06 19:26:17] 2025-06-06 17:25:59,996 | INFO     | process IDs to be killed: [3776896] (in reverse order)
[2025-06-06 19:26:17] 2025-06-06 17:26:00,100 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 19:26:17] 2025-06-06 17:26:00,100 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 19:26:17] 2025-06-06 17:26:00,112 | INFO     | did not find any defunct processes belonging to 3776896
[2025-06-06 19:26:17] 2025-06-06 17:26:00,120 | INFO     | did not find any defunct processes belonging to 3776896
[2025-06-06 19:26:17] 2025-06-06 17:26:00,120 | INFO     | ready for new job
[2025-06-06 19:26:17] 2025-06-06 17:26:00,120 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 19:26:17] 2025-06-06 17:26:00,121 | INFO     | **************************************
[2025-06-06 19:26:17] 2025-06-06 17:26:00,121 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 19:26:17] 2025-06-06 17:26:00,121 | INFO     | **************************************
[2025-06-06 19:26:17] 2025-06-06 17:26:00,121 | INFO     | 
[2025-06-06 19:26:17] 2025-06-06 17:26:00,127 | INFO     | architecture information:
[2025-06-06 19:26:17] 2025-06-06 17:26:00,127 | INFO     | executing command: cat /etc/os-release
[2025-06-06 19:26:17] 2025-06-06 17:26:00,139 | INFO     | cat /etc/os-release:
[2025-06-06 19:26:17] NAME="CentOS Linux"
[2025-06-06 19:26:17] VERSION="7 (Core)"
[2025-06-06 19:26:17] ID="centos"
[2025-06-06 19:26:17] ID_LIKE="rhel fedora"
[2025-06-06 19:26:17] VERSION_ID="7"
[2025-06-06 19:26:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 19:26:17] ANSI_COLOR="0;31"
[2025-06-06 19:26:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 19:26:17] HOME_URL="https://www.centos.org/"
[2025-06-06 19:26:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 19:26:17] 
[2025-06-06 19:26:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 19:26:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 19:26:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 19:26:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 19:26:17] 
[2025-06-06 19:26:17] 2025-06-06 17:26:00,139 | INFO     | **************************************
[2025-06-06 19:26:17] 2025-06-06 17:26:00,642 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/0
[2025-06-06 19:26:17] 2025-06-06 17:26:00,654 | INFO     | sufficient remaining disk space (3387733049344 B)
[2025-06-06 19:26:17] 2025-06-06 17:26:00,654 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 19:26:17] 2025-06-06 17:26:00,654 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 19:26:17] 2025-06-06 17:26:00,654 | INFO     | update_server=False
[2025-06-06 19:26:17] 2025-06-06 17:26:00,654 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 19:26:17] 2025-06-06 17:26:00,655 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 19:26:17] 2025-06-06 17:26:00,805 | INFO     | all data control threads have been joined
[2025-06-06 19:26:17] 2025-06-06 17:26:01,008 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 19:26:17] 2025-06-06 17:26:01,529 | INFO     | all payload control threads have been joined
[2025-06-06 19:26:17] 2025-06-06 17:26:01,540 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 19:26:17] 2025-06-06 17:26:01,541 | INFO     | aborting loop
[2025-06-06 19:26:17] 2025-06-06 17:26:01,572 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 19:26:17] 2025-06-06 17:26:01,572 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 19:26:17] 2025-06-06 17:26:01,572 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 19:26:17] 2025-06-06 17:26:01,660 | INFO     | [job] retrieve thread has finished
[2025-06-06 19:26:17] 2025-06-06 17:26:01,660 | INFO     | [job] queue monitor thread has finished
[2025-06-06 19:26:17] 2025-06-06 17:26:01,791 | INFO     | all job control threads have been joined
[2025-06-06 19:26:17] 2025-06-06 17:26:01,810 | INFO     | [data] control thread has finished
[2025-06-06 19:26:17] 2025-06-06 17:26:01,858 | INFO     | [data] copytool_in thread has finished
[2025-06-06 19:26:17] 2025-06-06 17:26:02,194 | INFO     | [payload] validate_post thread has finished
[2025-06-06 19:26:17] 2025-06-06 17:26:02,492 | INFO     | [job] validate thread has finished
[2025-06-06 19:26:17] 2025-06-06 17:26:02,535 | INFO     | [payload] control thread has finished
[2025-06-06 19:26:17] 2025-06-06 17:26:02,546 | INFO     | [job] job monitor thread has finished
[2025-06-06 19:26:17] 2025-06-06 17:26:02,704 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 19:26:17] 2025-06-06 17:26:02,739 | INFO     | [payload] failed_post thread has finished
[2025-06-06 19:26:17] 2025-06-06 17:26:02,742 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 19:26:17] 2025-06-06 17:26:02,797 | INFO     | [job] control thread has finished
[2025-06-06 19:26:17] 2025-06-06 17:26:02,935 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 19:26:17] 2025-06-06 17:26:02,979 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 19:26:17] 2025-06-06 17:26:03,013 | INFO     | [data] copytool_out thread has finished
[2025-06-06 19:26:17] 2025-06-06 17:26:06,984 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 19:26:17] 2025-06-06 17:26:11,249 | INFO     | job.realtimelogging is not enabled
[2025-06-06 19:26:17] 2025-06-06 17:26:12,254 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 19:26:17] 2025-06-06 17:26:12,487 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23288145626944)>', '<ExcThread(monitor, started 23287841142528)>']
[2025-06-06 19:26:17] 2025-06-06 17:26:12,626 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 19:26:17] 2025-06-06 17:26:12,627 | INFO     | [monitor] control thread has ended
[2025-06-06 19:26:17] 2025-06-06 17:26:17,512 | INFO     | all workflow threads have been joined
[2025-06-06 19:26:17] 2025-06-06 17:26:17,513 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 19:26:17] 2025-06-06 17:26:17,513 | INFO     | traces error code: 0
[2025-06-06 19:26:17] 2025-06-06 17:26:17,513 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 19:26:17] 2025-06-06 17:26:17,601 [wrapper] ==== pilot stdout END ====
[2025-06-06 19:26:17] 2025-06-06 17:26:17,605 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 19:26:17] 2025-06-06 17:26:17,607 [wrapper] pilotpid: 3768963
[2025-06-06 19:26:17] 2025-06-06 17:26:17,610 [wrapper] Pilot exit status: 0
[2025-06-06 19:26:17] 2025-06-06 17:26:17,620 [wrapper] pandaids: 6679207835
[2025-06-06 19:26:17] 2025-06-06 17:26:17,691 [wrapper] cleanup supervisor_pilot 3928199 3768964
[2025-06-06 19:26:17] 2025-06-06 17:26:17,694 [wrapper] Test setup, not cleaning
[2025-06-06 19:26:17] 2025-06-06 17:26:17,696 [wrapper] apfmon messages muted
[2025-06-06 19:26:17] 2025-06-06 17:26:17,699 [wrapper] ==== wrapper stdout END ====
[2025-06-06 19:26:17] 2025-06-06 17:26:17,701 [wrapper] ==== wrapper stderr END ====
[2025-06-06 19:26:17]  *** Error codes and diagnostics ***
[2025-06-06 19:26:17]     "exeErrorCode": 0,
[2025-06-06 19:26:17]     "exeErrorDiag": "",
[2025-06-06 19:26:17]     "pilotErrorCode": 0,
[2025-06-06 19:26:17]     "pilotErrorDiag": "",
[2025-06-06 19:26:17]  *** Listing of results directory ***
[2025-06-06 19:26:17] total 384612
[2025-06-06 19:26:17] -rw-r--r-- 1 boinc boinc    495897 Jun  4 10:46 pilot3.tar.gz
[2025-06-06 19:26:17] -rwx------ 1 boinc boinc     37140 Jun  4 10:54 runpilot2-wrapper.sh
[2025-06-06 19:26:17] -rw-r--r-- 1 boinc boinc      5111 Jun  4 10:54 queuedata.json
[2025-06-06 19:26:17] -rw-r--r-- 1 boinc boinc       100 Jun  6 18:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 19:26:17] -rwxr-xr-x 1 boinc boinc      7986 Jun  6 18:09 run_atlas
[2025-06-06 19:26:17] -rw-r--r-- 1 boinc boinc       105 Jun  6 18:09 job.xml
[2025-06-06 19:26:17] -rw-r--r-- 2 boinc boinc 214377396 Jun  6 18:09 EVNT.45006593._001250.pool.root.1
[2025-06-06 19:26:17] -rw-r--r-- 1 boinc boinc      6687 Jun  6 18:09 init_data.xml
[2025-06-06 19:26:17] -rw-r--r-- 2 boinc boinc     15093 Jun  6 18:09 start_atlas.sh
[2025-06-06 19:26:17] drwxrwx--x 2 boinc boinc      4096 Jun  6 18:09 shared
[2025-06-06 19:26:17] -rw-r--r-- 2 boinc boinc    508884 Jun  6 18:09 input.tar.gz
[2025-06-06 19:26:17] -rw-r--r-- 1 boinc boinc         0 Jun  6 18:09 boinc_lockfile
[2025-06-06 19:26:17] -rw-r--r-- 1 boinc boinc      2525 Jun  6 18:09 pandaJob.out
[2025-06-06 19:26:17] -rw------- 1 boinc boinc    985740 Jun  6 18:09 agis_schedconf.cvmfs.json
[2025-06-06 19:26:17] -rw------- 1 boinc boinc   1598969 Jun  6 18:09 agis_ddmendpoints.agis.ALL.json
[2025-06-06 19:26:17] drwx------ 4 boinc boinc      4096 Jun  6 18:09 pilot3
[2025-06-06 19:26:17] -rw------- 1 boinc boinc        95 Jun  6 19:25 pilot_heartbeat.json
[2025-06-06 19:26:17] -rw------- 1 boinc boinc 174221821 Jun  6 19:25 HITS.45006595._056000.pool.root.1
[2025-06-06 19:26:17] -rw------- 1 boinc boinc      1026 Jun  6 19:25 memory_monitor_summary.json
[2025-06-06 19:26:17] -rw-r--r-- 1 boinc boinc       529 Jun  6 19:25 boinc_task_state.xml
[2025-06-06 19:26:17] -rw------- 1 boinc boinc    245702 Jun  6 19:25 log.45006595._056000.job.log.tgz.1
[2025-06-06 19:26:17] -rw------- 1 boinc boinc      7693 Jun  6 19:25 heartbeat.json
[2025-06-06 19:26:17] -rw------- 1 boinc boinc      4436 Jun  6 19:26 pilotlog.txt
[2025-06-06 19:26:17] -rw-r--r-- 1 boinc boinc      8192 Jun  6 19:26 boinc_mmap_file
[2025-06-06 19:26:17] -rw-r--r-- 1 boinc boinc        27 Jun  6 19:26 wrapper_checkpoint.txt
[2025-06-06 19:26:17] -rw------- 1 boinc boinc    457337 Jun  6 19:26 log.45006595._056000.job.log.1
[2025-06-06 19:26:17] -rw------- 1 boinc boinc       357 Jun  6 19:26 output.list
[2025-06-06 19:26:17] -rw-r--r-- 1 boinc boinc       620 Jun  6 19:26 runtime_log
[2025-06-06 19:26:17] -rw------- 1 boinc boinc    727040 Jun  6 19:26 result.tar.gz
[2025-06-06 19:26:17] -rw-r--r-- 1 boinc boinc      9025 Jun  6 19:26 runtime_log.err
[2025-06-06 19:26:17] -rw------- 1 boinc boinc       661 Jun  6 19:26 aEUKDm73yg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmYzaKDmwbJ1em.diag
[2025-06-06 19:26:17] -rw-r--r-- 1 boinc boinc     21648 Jun  6 19:26 stderr.txt
[2025-06-06 19:26:17] HITS file was successfully produced:
[2025-06-06 19:26:17] -rw------- 1 boinc boinc 174221821 Jun  6 19:25 shared/HITS.pool.root.1
[2025-06-06 19:26:17]  *** Contents of shared directory: ***
[2025-06-06 19:26:17] total 380732
[2025-06-06 19:26:17] -rw-r--r-- 2 boinc boinc 214377396 Jun  6 18:09 ATLAS.root_0
[2025-06-06 19:26:17] -rw-r--r-- 2 boinc boinc     15093 Jun  6 18:09 start_atlas.sh
[2025-06-06 19:26:17] -rw-r--r-- 2 boinc boinc    508884 Jun  6 18:09 input.tar.gz
[2025-06-06 19:26:17] -rw------- 1 boinc boinc 174221821 Jun  6 19:25 HITS.pool.root.1
[2025-06-06 19:26:17] -rw------- 1 boinc boinc    727040 Jun  6 19:26 result.tar.gz
19:26:19 (3765054): run_atlas exited; CPU time 17502.765216
19:26:19 (3765054): called boinc_finish(0)

</stderr_txt>
]]>

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