Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
18:04:12 (255232): wrapper (7.7.26015): starting
18:04:12 (255232): wrapper: running run_atlas (--nthreads 4)
[2025-06-04 18:04:12] Arguments: --nthreads 4
[2025-06-04 18:04:12] Threads: 4
[2025-06-04 18:04:12] Checking for CVMFS
[2025-06-04 18:04:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 18:04:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 18:04:12] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 18:04:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 18:04:13] 2.9.2.0 2937 615 81696 146786 1 56 30219449 36864000 0 130560 0 674114 99.994 156191 11548 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-06-04 18:04:13] CVMFS is ok
[2025-06-04 18:04:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 18:04:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 18:04:13] Further information can be found at the LHC@home message board.
[2025-06-04 18:04:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 18:04:13] Checking for apptainer binary...
[2025-06-04 18:04:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 18:04:13] Running /usr/bin/apptainer --version
[2025-06-04 18:04:13] apptainer version 1.3.6-6.1
[2025-06-04 18:04:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 18:04:13] magicA244a
[2025-06-04 18:04:13] apptainer works
[2025-06-04 18:04:13] Set ATHENA_PROC_NUMBER=4
[2025-06-04 18:04:13] Set ATHENA_CORE_NUMBER=4
[2025-06-04 18:04:13] Starting ATLAS job with PandaID=6679463596
[2025-06-04 18:04:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 18:59:23]  *** The last 200 lines of the pilot log: ***
[2025-06-04 18:59:23]  filetype=log
[2025-06-04 18:59:23]  guid=f1045196-ec22-4913-add0-2333332ccba2
[2025-06-04 18:59:23]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 18:59:23]  is_altstaged=None
[2025-06-04 18:59:23]  is_tar=False
[2025-06-04 18:59:23]  lfn=log.45006595._056350.job.log.tgz.1
[2025-06-04 18:59:23]  mtime=0
[2025-06-04 18:59:23]  protocol_id=None
[2025-06-04 18:59:23]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 18:59:23]  replicas=None
[2025-06-04 18:59:23]  scope=mc23_13p6TeV
[2025-06-04 18:59:23]  status=None
[2025-06-04 18:59:23]  status_code=0
[2025-06-04 18:59:23]  storage_token=
[2025-06-04 18:59:23]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6679463596/log.45006595._056350.job.log.tgz.1
[2025-06-04 18:59:23]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/93/a8/log.45006595._056350.job.log.tgz.1
[2025-06-04 18:59:23]  workdir=None
[2025-06-04 18:59:23] ]
[2025-06-04 18:59:23] 2025-06-04 16:58:59,731 | INFO     | transferring file log.45006595._056350.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6679463596/log.45006595._056350.job.log.tgz.1 to /local/data/boinc/
[2025-06-04 18:59:23] 2025-06-04 16:58:59,731 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6679463596/log.45006595._056350.job.log.tgz.1 /local/data/boinc/slots/0/log.45006595._0563
[2025-06-04 18:59:23] 2025-06-04 16:58:59,745 | INFO     | adding to output.list: log.45006595._056350.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/93/a8/log.45006595._056350.job.log.tg
[2025-06-04 18:59:23] 2025-06-04 16:58:59,745 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 18:59:23] 2025-06-04 16:58:59,745 | INFO     | summary of transferred files:
[2025-06-04 18:59:23] 2025-06-04 16:58:59,745 | INFO     |  -- lfn=log.45006595._056350.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 18:59:23] 2025-06-04 16:58:59,745 | INFO     | stage-out finished correctly
[2025-06-04 18:59:23] 2025-06-04 16:58:59,775 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 18:59:23] 2025-06-04 16:59:01,499 | INFO     | job 6679463596 has state=finished
[2025-06-04 18:59:23] 2025-06-04 16:59:01,500 | INFO     | preparing for final server update for job 6679463596 in state='finished'
[2025-06-04 18:59:23] 2025-06-04 16:59:01,500 | INFO     | this job has now completed (state=finished)
[2025-06-04 18:59:23] 2025-06-04 16:59:01,500 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 18:59:23] 2025-06-04 16:59:01,500 | INFO     | log transfer has been attempted: DONE
[2025-06-04 18:59:23] 2025-06-04 16:59:01,500 | INFO     | job 6679463596 has finished - writing final server update
[2025-06-04 18:59:23] 2025-06-04 16:59:01,500 | INFO     | total number of processed events: 400 (read)
[2025-06-04 18:59:23] 2025-06-04 16:59:01,501 | INFO     | executing command: lscpu
[2025-06-04 18:59:23] 2025-06-04 16:59:01,519 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 18:59:23] 2025-06-04 16:59:05,159 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 18:59:23] 2025-06-04 16:59:05,159 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6679463596/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 18:59:23] 2025-06-04 16:59:05,159 | INFO     | extracted standard info from prmon json
[2025-06-04 18:59:23] 2025-06-04 16:59:05,159 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 18:59:23] 2025-06-04 16:59:05,159 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 18:59:23] 2025-06-04 16:59:05,160 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 18:59:23] 2025-06-04 16:59:05,160 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 18:59:23] 2025-06-04 16:59:05,160 | INFO     | fitting pss+swap vs Time
[2025-06-04 18:59:23] 2025-06-04 16:59:05,160 | INFO     | sum of square deviations: 32179208.0
[2025-06-04 18:59:23] 2025-06-04 16:59:05,160 | INFO     | sum of deviations: 664840159.0
[2025-06-04 18:59:23] 2025-06-04 16:59:05,160 | INFO     | mean x: 1749054787.0
[2025-06-04 18:59:23] 2025-06-04 16:59:05,160 | INFO     | mean y: 2388809.255319149
[2025-06-04 18:59:23] 2025-06-04 16:59:05,160 | INFO     | -- intersect: -36134046328.887024
[2025-06-04 18:59:23] 2025-06-04 16:59:05,160 | INFO     | intersect: -36134046328.887024
[2025-06-04 18:59:23] 2025-06-04 16:59:05,161 | INFO     | chi2: 0.00035666479112211256
[2025-06-04 18:59:23] 2025-06-04 16:59:05,161 | INFO     | -- intersect: -36134046328.887024
[2025-06-04 18:59:23] 2025-06-04 16:59:05,161 | INFO     | current memory leak: 20.66 B/s (using 47 data points, chi2=0.00)
[2025-06-04 18:59:23] 2025-06-04 16:59:05,161 | INFO     | ..............................
[2025-06-04 18:59:23] 2025-06-04 16:59:05,161 | INFO     | . Timing measurements:
[2025-06-04 18:59:23] 2025-06-04 16:59:05,161 | INFO     | . get job = 0 s
[2025-06-04 18:59:23] 2025-06-04 16:59:05,161 | INFO     | . initial setup = 1 s
[2025-06-04 18:59:23] 2025-06-04 16:59:05,161 | INFO     | . payload setup = 3 s
[2025-06-04 18:59:23] 2025-06-04 16:59:05,161 | INFO     | . stage-in = 0 s
[2025-06-04 18:59:23] 2025-06-04 16:59:05,161 | INFO     | . payload execution = 3260 s
[2025-06-04 18:59:23] 2025-06-04 16:59:05,161 | INFO     | . stage-out = 0 s
[2025-06-04 18:59:23] 2025-06-04 16:59:05,161 | INFO     | . log creation = 0 s
[2025-06-04 18:59:23] 2025-06-04 16:59:05,161 | INFO     | ..............................
[2025-06-04 18:59:23] 2025-06-04 16:59:05,206 | INFO     | 
[2025-06-04 18:59:23] 2025-06-04 16:59:05,206 | INFO     | job summary report
[2025-06-04 18:59:23] 2025-06-04 16:59:05,206 | INFO     | --------------------------------------------------
[2025-06-04 18:59:23] 2025-06-04 16:59:05,206 | INFO     | PanDA job id: 6679463596
[2025-06-04 18:59:23] 2025-06-04 16:59:05,206 | INFO     | task id: 45006595
[2025-06-04 18:59:23] 2025-06-04 16:59:05,206 | INFO     | errors: (none)
[2025-06-04 18:59:23] 2025-06-04 16:59:05,206 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 18:59:23] 2025-06-04 16:59:05,207 | INFO     | pilot state: finished 
[2025-06-04 18:59:23] 2025-06-04 16:59:05,207 | INFO     | transexitcode: 0
[2025-06-04 18:59:23] 2025-06-04 16:59:05,207 | INFO     | exeerrorcode: 0
[2025-06-04 18:59:23] 2025-06-04 16:59:05,207 | INFO     | exeerrordiag: 
[2025-06-04 18:59:23] 2025-06-04 16:59:05,207 | INFO     | exitcode: 0
[2025-06-04 18:59:23] 2025-06-04 16:59:05,207 | INFO     | exitmsg: OK
[2025-06-04 18:59:23] 2025-06-04 16:59:05,207 | INFO     | cpuconsumptiontime: 12062 s
[2025-06-04 18:59:23] 2025-06-04 16:59:05,207 | INFO     | nevents: 400
[2025-06-04 18:59:23] 2025-06-04 16:59:05,207 | INFO     | neventsw: 0
[2025-06-04 18:59:23] 2025-06-04 16:59:05,207 | INFO     | pid: 265547
[2025-06-04 18:59:23] 2025-06-04 16:59:05,207 | INFO     | pgrp: 265547
[2025-06-04 18:59:23] 2025-06-04 16:59:05,207 | INFO     | corecount: 4
[2025-06-04 18:59:23] 2025-06-04 16:59:05,207 | INFO     | event service: False
[2025-06-04 18:59:23] 2025-06-04 16:59:05,207 | INFO     | sizes: {0: 2397295, 3: 2397501, 11: 2397529, 3267: 2423119, 3268: 2432122, 3273: 2432236}
[2025-06-04 18:59:23] 2025-06-04 16:59:05,207 | INFO     | --------------------------------------------------
[2025-06-04 18:59:23] 2025-06-04 16:59:05,207 | INFO     | 
[2025-06-04 18:59:23] 2025-06-04 16:59:05,207 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-06-04 18:59:23] 2025-06-04 16:59:05,222 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 18:59:23] 2025-06-04 16:59:05,222 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 18:59:23] 2025-06-04 16:59:05,222 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 18:59:23] 2025-06-04 16:59:05,222 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 18:59:23] 2025-06-04 16:59:05,222 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 18:59:23] 2025-06-04 16:59:05,222 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 18:59:23] 2025-06-04 16:59:05,222 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 18:59:23] 2025-06-04 16:59:05,223 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 18:59:23] 2025-06-04 16:59:05,223 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 18:59:23] 2025-06-04 16:59:05,223 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 18:59:23] 2025-06-04 16:59:05,223 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 18:59:23] 2025-06-04 16:59:05,223 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 18:59:23] 2025-06-04 16:59:05,223 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 18:59:23] 2025-06-04 16:59:05,223 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 18:59:23] 2025-06-04 16:59:05,223 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 18:59:23] 2025-06-04 16:59:05,223 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 18:59:23] 2025-06-04 16:59:05,223 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 18:59:23] 2025-06-04 16:59:05,223 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 18:59:23] 2025-06-04 16:59:05,223 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 18:59:23] 2025-06-04 16:59:05,223 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 18:59:23] 2025-06-04 16:59:05,223 | INFO     | job 6679463596 has completed (purged errors)
[2025-06-04 18:59:23] 2025-06-04 16:59:05,223 | INFO     | overall cleanup function is called
[2025-06-04 18:59:23] 2025-06-04 16:59:06,221 | WARNING  | process 265547 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 18:59:23] 2025-06-04 16:59:06,228 | INFO     | --- collectZombieJob: --- 10, [265547]
[2025-06-04 18:59:23] 2025-06-04 16:59:06,228 | INFO     | zombie collector waiting for pid 265547
[2025-06-04 18:59:23] 2025-06-04 16:59:06,229 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 18:59:23] 2025-06-04 16:59:06,229 | INFO     | collected zombie processes
[2025-06-04 18:59:23] 2025-06-04 16:59:06,229 | INFO     | will attempt to kill all subprocesses of pid=265547
[2025-06-04 18:59:23] 2025-06-04 16:59:06,290 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 18:59:23] 2025-06-04 16:59:06,330 | INFO     | process IDs to be killed: [265547] (in reverse order)
[2025-06-04 18:59:23] 2025-06-04 16:59:06,356 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 18:59:23] 2025-06-04 16:59:06,357 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 18:59:23] 2025-06-04 16:59:06,360 | INFO     | did not find any defunct processes belonging to 265547
[2025-06-04 18:59:23] 2025-06-04 16:59:06,361 | INFO     | did not find any defunct processes belonging to 265547
[2025-06-04 18:59:23] 2025-06-04 16:59:06,361 | INFO     | ready for new job
[2025-06-04 18:59:23] 2025-06-04 16:59:06,361 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 18:59:23] 2025-06-04 16:59:06,362 | INFO     | **************************************
[2025-06-04 18:59:23] 2025-06-04 16:59:06,362 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 18:59:23] 2025-06-04 16:59:06,362 | INFO     | **************************************
[2025-06-04 18:59:23] 2025-06-04 16:59:06,362 | INFO     | 
[2025-06-04 18:59:23] 2025-06-04 16:59:06,362 | INFO     | architecture information:
[2025-06-04 18:59:23] 2025-06-04 16:59:06,362 | INFO     | executing command: cat /etc/os-release
[2025-06-04 18:59:23] 2025-06-04 16:59:06,369 | INFO     | number of running child processes to parent process 265547: 1
[2025-06-04 18:59:23] 2025-06-04 16:59:06,369 | INFO     | maximum number of monitored processes: 6
[2025-06-04 18:59:23] 2025-06-04 16:59:06,369 | INFO     | aborting job monitoring since job object (job id=6679463596) has expired
[2025-06-04 18:59:23] 2025-06-04 16:59:06,373 | INFO     | cat /etc/os-release:
[2025-06-04 18:59:23] NAME="CentOS Linux"
[2025-06-04 18:59:23] VERSION="7 (Core)"
[2025-06-04 18:59:23] ID="centos"
[2025-06-04 18:59:23] ID_LIKE="rhel fedora"
[2025-06-04 18:59:23] VERSION_ID="7"
[2025-06-04 18:59:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 18:59:23] ANSI_COLOR="0;31"
[2025-06-04 18:59:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 18:59:23] HOME_URL="https://www.centos.org/"
[2025-06-04 18:59:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 18:59:23] 
[2025-06-04 18:59:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 18:59:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 18:59:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 18:59:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 18:59:23] 
[2025-06-04 18:59:23] 2025-06-04 16:59:06,373 | INFO     | **************************************
[2025-06-04 18:59:23] 2025-06-04 16:59:06,875 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-06-04 18:59:23] 2025-06-04 16:59:06,889 | INFO     | sufficient remaining disk space (326763544576 B)
[2025-06-04 18:59:23] 2025-06-04 16:59:06,889 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 18:59:23] 2025-06-04 16:59:06,889 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 18:59:23] 2025-06-04 16:59:06,889 | INFO     | update_server=False
[2025-06-04 18:59:23] 2025-06-04 16:59:06,889 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 18:59:23] 2025-06-04 16:59:06,889 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:59:23] 2025-06-04 16:59:06,889 | INFO     | will abort loop
[2025-06-04 18:59:23] 2025-06-04 16:59:06,889 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:59:23] 2025-06-04 16:59:07,505 | INFO     | all payload control threads have been joined
[2025-06-04 18:59:23] 2025-06-04 16:59:07,674 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 18:59:23] 2025-06-04 16:59:07,675 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 18:59:23] 2025-06-04 16:59:07,675 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 18:59:23] 2025-06-04 16:59:07,788 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 18:59:23] 2025-06-04 16:59:07,819 | INFO     | all data control threads have been joined
[2025-06-04 18:59:23] 2025-06-04 16:59:07,891 | INFO     | [job] retrieve thread has finished
[2025-06-04 18:59:23] 2025-06-04 16:59:07,895 | INFO     | [job] job monitor thread has finished
[2025-06-04 18:59:23] 2025-06-04 16:59:07,895 | INFO     | [job] queue monitor thread has finished
[2025-06-04 18:59:23] 2025-06-04 16:59:07,959 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 18:59:23] 2025-06-04 16:59:08,032 | INFO     | all job control threads have been joined
[2025-06-04 18:59:23] 2025-06-04 16:59:08,487 | INFO     | [payload] validate_post thread has finished
[2025-06-04 18:59:23] 2025-06-04 16:59:08,509 | INFO     | [payload] control thread has finished
[2025-06-04 18:59:23] 2025-06-04 16:59:08,825 | INFO     | [data] control thread has finished
[2025-06-04 18:59:23] 2025-06-04 16:59:09,013 | INFO     | [data] copytool_in thread has finished
[2025-06-04 18:59:23] 2025-06-04 16:59:09,038 | INFO     | [job] control thread has finished
[2025-06-04 18:59:23] 2025-06-04 16:59:09,080 | INFO     | [payload] failed_post thread has finished
[2025-06-04 18:59:23] 2025-06-04 16:59:09,251 | INFO     | [job] validate thread has finished
[2025-06-04 18:59:23] 2025-06-04 16:59:09,362 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 18:59:23] 2025-06-04 16:59:09,390 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 18:59:23] 2025-06-04 16:59:09,795 | INFO     | [data] copytool_out thread has finished
[2025-06-04 18:59:23] 2025-06-04 16:59:10,315 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 18:59:23] 2025-06-04 16:59:14,323 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 18:59:23] 2025-06-04 16:59:17,075 | INFO     | job.realtimelogging is not enabled
[2025-06-04 18:59:23] 2025-06-04 16:59:18,081 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 18:59:23] 2025-06-04 16:59:18,266 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139980746987328)>', '<ExcThread(monitor, started 139980382902016)>']
[2025-06-04 18:59:23] 2025-06-04 16:59:18,734 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 18:59:23] 2025-06-04 16:59:18,734 | INFO     | [monitor] control thread has ended
[2025-06-04 18:59:23] 2025-06-04 16:59:23,292 | INFO     | all workflow threads have been joined
[2025-06-04 18:59:23] 2025-06-04 16:59:23,292 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 18:59:23] 2025-06-04 16:59:23,292 | INFO     | traces error code: 0
[2025-06-04 18:59:23] 2025-06-04 16:59:23,292 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 18:59:23] 2025-06-04 16:59:23,348 [wrapper] ==== pilot stdout END ====
[2025-06-04 18:59:23] 2025-06-04 16:59:23,351 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 18:59:23] 2025-06-04 16:59:23,353 [wrapper] pilotpid: 258933
[2025-06-04 18:59:23] 2025-06-04 16:59:23,356 [wrapper] Pilot exit status: 0
[2025-06-04 18:59:23] 2025-06-04 16:59:23,364 [wrapper] pandaids: 6679463596
[2025-06-04 18:59:23] 2025-06-04 16:59:23,381 [wrapper] cleanup supervisor_pilot  275378 258934
[2025-06-04 18:59:23] 2025-06-04 16:59:23,384 [wrapper] Test setup, not cleaning
[2025-06-04 18:59:23] 2025-06-04 16:59:23,387 [wrapper] apfmon messages muted
[2025-06-04 18:59:23] 2025-06-04 16:59:23,389 [wrapper] ==== wrapper stdout END ====
[2025-06-04 18:59:23] 2025-06-04 16:59:23,391 [wrapper] ==== wrapper stderr END ====
[2025-06-04 18:59:23]  *** Error codes and diagnostics ***
[2025-06-04 18:59:23]     "exeErrorCode": 0,
[2025-06-04 18:59:23]     "exeErrorDiag": "",
[2025-06-04 18:59:23]     "pilotErrorCode": 0,
[2025-06-04 18:59:23]     "pilotErrorDiag": "",
[2025-06-04 18:59:23]  *** Listing of results directory ***
[2025-06-04 18:59:23] total 384440
[2025-06-04 18:59:23] -rw-r--r-- 1 boinc boinc      5111 Jun  4 11:03 queuedata.json
[2025-06-04 18:59:23] -rw-r--r-- 1 boinc boinc    495897 Jun  4 11:04 pilot3.tar.gz
[2025-06-04 18:59:23] -rwx------ 1 boinc boinc     37140 Jun  4 11:04 runpilot2-wrapper.sh
[2025-06-04 18:59:23] -rw-r--r-- 1 boinc boinc       100 Jun  4 18:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 18:59:23] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 18:04 run_atlas
[2025-06-04 18:59:23] -rw-r--r-- 1 boinc boinc       105 Jun  4 18:04 job.xml
[2025-06-04 18:59:23] -rw-r--r-- 2 boinc boinc 215077866 Jun  4 18:04 EVNT.45006593._001872.pool.root.1
[2025-06-04 18:59:23] -rw-r--r-- 1 boinc boinc      6920 Jun  4 18:04 init_data.xml
[2025-06-04 18:59:23] drwxrwx--x 2 boinc boinc      4096 Jun  4 18:04 shared
[2025-06-04 18:59:23] -rw-r--r-- 2 boinc boinc    508883 Jun  4 18:04 input.tar.gz
[2025-06-04 18:59:23] -rw-r--r-- 2 boinc boinc     15093 Jun  4 18:04 start_atlas.sh
[2025-06-04 18:59:23] -rw-r--r-- 1 boinc boinc         0 Jun  4 18:04 boinc_lockfile
[2025-06-04 18:59:23] -rw-r--r-- 1 boinc boinc      2525 Jun  4 18:04 pandaJob.out
[2025-06-04 18:59:23] -rw------- 1 boinc boinc    990989 Jun  4 18:04 agis_schedconf.cvmfs.json
[2025-06-04 18:59:23] -rw------- 1 boinc boinc   1598969 Jun  4 18:04 agis_ddmendpoints.agis.ALL.json
[2025-06-04 18:59:23] drwx------ 4 boinc boinc      4096 Jun  4 18:04 pilot3
[2025-06-04 18:59:23] -rw------- 1 boinc boinc        95 Jun  4 18:58 pilot_heartbeat.json
[2025-06-04 18:59:23] -rw------- 1 boinc boinc 173645280 Jun  4 18:58 HITS.45006595._056350.pool.root.1
[2025-06-04 18:59:23] -rw-r--r-- 1 boinc boinc       529 Jun  4 18:58 boinc_task_state.xml
[2025-06-04 18:59:23] -rw------- 1 boinc boinc      1014 Jun  4 18:58 memory_monitor_summary.json
[2025-06-04 18:59:23] -rw------- 1 boinc boinc    217226 Jun  4 18:58 log.45006595._056350.job.log.tgz.1
[2025-06-04 18:59:23] -rw------- 1 boinc boinc      7649 Jun  4 18:59 heartbeat.json
[2025-06-04 18:59:23] -rw-r--r-- 1 boinc boinc      8192 Jun  4 18:59 boinc_mmap_file
[2025-06-04 18:59:23] -rw-r--r-- 1 boinc boinc        27 Jun  4 18:59 wrapper_checkpoint.txt
[2025-06-04 18:59:23] -rw------- 1 boinc boinc      4718 Jun  4 18:59 pilotlog.txt
[2025-06-04 18:59:23] -rw------- 1 boinc boinc    335433 Jun  4 18:59 log.45006595._056350.job.log.1
[2025-06-04 18:59:23] -rw------- 1 boinc boinc       357 Jun  4 18:59 output.list
[2025-06-04 18:59:23] -rw-r--r-- 1 boinc boinc       620 Jun  4 18:59 runtime_log
[2025-06-04 18:59:23] -rw------- 1 boinc boinc    573440 Jun  4 18:59 result.tar.gz
[2025-06-04 18:59:23] -rw-r--r-- 1 boinc boinc      8753 Jun  4 18:59 runtime_log.err
[2025-06-04 18:59:23] -rw------- 1 boinc boinc       661 Jun  4 18:59 W6GMDmTEzg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmXvnKDmbJHctm.diag
[2025-06-04 18:59:23] -rw-r--r-- 1 boinc boinc     21135 Jun  4 18:59 stderr.txt
[2025-06-04 18:59:23] HITS file was successfully produced:
[2025-06-04 18:59:23] -rw------- 1 boinc boinc 173645280 Jun  4 18:58 shared/HITS.pool.root.1
[2025-06-04 18:59:23]  *** Contents of shared directory: ***
[2025-06-04 18:59:23] total 380700
[2025-06-04 18:59:23] -rw-r--r-- 2 boinc boinc 215077866 Jun  4 18:04 ATLAS.root_0
[2025-06-04 18:59:23] -rw-r--r-- 2 boinc boinc    508883 Jun  4 18:04 input.tar.gz
[2025-06-04 18:59:23] -rw-r--r-- 2 boinc boinc     15093 Jun  4 18:04 start_atlas.sh
[2025-06-04 18:59:23] -rw------- 1 boinc boinc 173645280 Jun  4 18:58 HITS.pool.root.1
[2025-06-04 18:59:23] -rw------- 1 boinc boinc    573440 Jun  4 18:59 result.tar.gz
18:59:24 (255232): run_atlas exited; CPU time 12072.024300
18:59:24 (255232): called boinc_finish(0)

</stderr_txt>
]]>

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