Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:21:30 (15430): wrapper (7.7.26015): starting
23:21:30 (15430): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 23:21:30] Arguments: --nthreads 8
[2025-06-04 23:21:30] Threads: 8
[2025-06-04 23:21:30] Checking for CVMFS
[2025-06-04 23:21:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 23:21:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 23:21:32] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 23:21:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 23:21:34] 2.11.2.0 8404 33907 97452 146795 2 16 19432526 25165825 2745 130560 0 17772973 99.836 19358237 4311 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 23:21:34] CVMFS is ok
[2025-06-04 23:21:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 23:21:34] Checking for apptainer binary...
[2025-06-04 23:21:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 23:21:34] Running /usr/bin/apptainer --version
[2025-06-04 23:21:34] apptainer version 1.3.2-1.el7
[2025-06-04 23:21:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 00:56:45] cg-vwn309.simple-grid.lan
[2025-06-05 00:56:45] apptainer works
[2025-06-05 00:56:45] Set ATHENA_PROC_NUMBER=8
[2025-06-05 00:56:45] Set ATHENA_CORE_NUMBER=8
[2025-06-05 00:56:45] Starting ATLAS job with PandaID=6679235254
[2025-06-05 00:56:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 06:08:48]  *** The last 200 lines of the pilot log: ***
[2025-06-05 06:08:48] 2025-06-05 03:03:57,210 | INFO     | extracted standard info from prmon json
[2025-06-05 06:08:48] 2025-06-05 03:03:57,210 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 06:08:48] 2025-06-05 03:03:57,210 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 06:08:48] 2025-06-05 03:03:57,211 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 06:08:48] 2025-06-05 03:03:57,211 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 06:08:48] 2025-06-05 03:03:57,216 | INFO     | fitting pss+swap vs Time
[2025-06-05 06:08:48] 2025-06-05 03:03:57,217 | INFO     | sum of square deviations: 3822136780.0
[2025-06-05 06:08:48] 2025-06-05 03:03:57,219 | INFO     | sum of deviations: 102185353591.00002
[2025-06-05 06:08:48] 2025-06-05 03:03:57,227 | INFO     | mean x: 1749085495.0
[2025-06-05 06:08:48] 2025-06-05 03:03:57,227 | INFO     | mean y: 2420035.3463203465
[2025-06-05 06:08:48] 2025-06-05 03:03:57,227 | INFO     | -- intersect: -46759621737.38801
[2025-06-05 06:08:48] 2025-06-05 03:03:57,227 | INFO     | intersect: -46759621737.38801
[2025-06-05 06:08:48] 2025-06-05 03:03:57,228 | INFO     | chi2: 7.12901618996563
[2025-06-05 06:08:48] 2025-06-05 03:03:57,228 | INFO     | sum of square deviations: 3579276412.5
[2025-06-05 06:08:48] 2025-06-05 03:03:57,230 | INFO     | sum of deviations: 114965581046.49998
[2025-06-05 06:08:48] 2025-06-05 03:03:57,230 | INFO     | mean x: 1749085342.5
[2025-06-05 06:08:48] 2025-06-05 03:03:57,230 | INFO     | mean y: 2427891.889380531
[2025-06-05 06:08:48] 2025-06-05 03:03:57,230 | INFO     | -- intersect: -56177813454.706795
[2025-06-05 06:08:48] 2025-06-05 03:03:57,230 | INFO     | intersect: -56177813454.706795
[2025-06-05 06:08:48] 2025-06-05 03:03:57,231 | INFO     | chi2: 6.414784878978344
[2025-06-05 06:08:48] 2025-06-05 03:03:57,231 | INFO     | current chi2=6.414784878978344 (change=10.018651830144448 %)
[2025-06-05 06:08:48] 2025-06-05 03:03:57,231 | INFO     | right removable region: 225
[2025-06-05 06:08:48] 2025-06-05 03:03:57,232 | INFO     | sum of square deviations: 3579276412.5
[2025-06-05 06:08:48] 2025-06-05 03:03:57,233 | INFO     | sum of deviations: 22653689041.500015
[2025-06-05 06:08:48] 2025-06-05 03:03:57,234 | INFO     | mean x: 1749085647.5
[2025-06-05 06:08:48] 2025-06-05 03:03:57,234 | INFO     | mean y: 2469937.110619469
[2025-06-05 06:08:48] 2025-06-05 03:03:57,234 | INFO     | -- intersect: -11067712356.44973
[2025-06-05 06:08:48] 2025-06-05 03:03:57,234 | INFO     | intersect: -11067712356.44973
[2025-06-05 06:08:48] 2025-06-05 03:03:57,235 | INFO     | chi2: 2.2851164408078404
[2025-06-05 06:08:48] 2025-06-05 03:03:57,235 | INFO     | current chi2=2.2851164408078404 (change=67.94625822249876 %)
[2025-06-05 06:08:48] 2025-06-05 03:03:57,235 | INFO     | sum of square deviations: 3346927870.0
[2025-06-05 06:08:48] 2025-06-05 03:03:57,246 | INFO     | sum of deviations: -18007875819.0
[2025-06-05 06:08:48] 2025-06-05 03:03:57,247 | INFO     | mean x: 1749085800.0
[2025-06-05 06:08:48] 2025-06-05 03:03:57,247 | INFO     | mean y: 2496486.9909502263
[2025-06-05 06:08:48] 2025-06-05 03:03:57,247 | INFO     | -- intersect: 9413311749.99698
[2025-06-05 06:08:48] 2025-06-05 03:03:57,247 | INFO     | intersect: 9413311749.99698
[2025-06-05 06:08:48] 2025-06-05 03:03:57,247 | INFO     | chi2: 0.8850717716140474
[2025-06-05 06:08:48] 2025-06-05 03:03:57,248 | INFO     | current chi2=0.8850717716140474 (change=61.26797935508467 %)
[2025-06-05 06:08:48] 2025-06-05 03:03:57,248 | INFO     | sum of square deviations: 3124858590.0
[2025-06-05 06:08:48] 2025-06-05 03:03:57,250 | INFO     | sum of deviations: -25704563507.0
[2025-06-05 06:08:48] 2025-06-05 03:03:57,250 | INFO     | mean x: 1749085952.5
[2025-06-05 06:08:48] 2025-06-05 03:03:57,250 | INFO     | mean y: 2501722.2592592593
[2025-06-05 06:08:48] 2025-06-05 03:03:57,250 | INFO     | -- intersect: 14390189884.889954
[2025-06-05 06:08:48] 2025-06-05 03:03:57,250 | INFO     | intersect: 14390189884.889954
[2025-06-05 06:08:48] 2025-06-05 03:03:57,251 | INFO     | chi2: 0.8085365030547008
[2025-06-05 06:08:48] 2025-06-05 03:03:57,251 | INFO     | current chi2=0.8085365030547008 (change=8.647351662766761 %)
[2025-06-05 06:08:48] 2025-06-05 03:03:57,251 | INFO     | left removable region: 30
[2025-06-05 06:08:48] 2025-06-05 03:03:57,251 | INFO     | sum of square deviations: 2299168690.0
[2025-06-05 06:08:48] 2025-06-05 03:03:57,253 | INFO     | sum of deviations: -8992160303.999998
[2025-06-05 06:08:48] 2025-06-05 03:03:57,253 | INFO     | mean x: 1749086227.0
[2025-06-05 06:08:48] 2025-06-05 03:03:57,253 | INFO     | mean y: 2510411.2153846156
[2025-06-05 06:08:48] 2025-06-05 03:03:57,253 | INFO     | -- intersect: 6843271512.003743
[2025-06-05 06:08:48] 2025-06-05 03:03:57,253 | INFO     | intersect: 6843271512.003743
[2025-06-05 06:08:48] 2025-06-05 03:03:57,253 | INFO     | chi2: 0.0169285948121037
[2025-06-05 06:08:48] 2025-06-05 03:03:57,254 | INFO     | -- intersect: 6843271512.003743
[2025-06-05 06:08:48] 2025-06-05 03:03:57,254 | INFO     | current memory leak: -3.91 B/s (using 195 data points, chi2=0.02)
[2025-06-05 06:08:48] 2025-06-05 03:03:57,255 | INFO     | ..............................
[2025-06-05 06:08:48] 2025-06-05 03:03:57,255 | INFO     | . Timing measurements:
[2025-06-05 06:08:48] 2025-06-05 03:03:57,255 | INFO     | . get job = 0 s
[2025-06-05 06:08:48] 2025-06-05 03:03:57,255 | INFO     | . initial setup = 7 s
[2025-06-05 06:08:48] 2025-06-05 03:03:57,255 | INFO     | . payload setup = 152 s
[2025-06-05 06:08:48] 2025-06-05 03:03:57,255 | INFO     | . stage-in = 0 s
[2025-06-05 06:08:48] 2025-06-05 03:03:57,255 | INFO     | . payload execution = 14206 s
[2025-06-05 06:08:48] 2025-06-05 03:03:57,255 | INFO     | . stage-out = 6 s
[2025-06-05 06:08:48] 2025-06-05 03:03:57,255 | INFO     | . log creation = 1 s
[2025-06-05 06:08:48] 2025-06-05 03:03:57,256 | INFO     | ..............................
[2025-06-05 06:08:48] 2025-06-05 03:03:57,481 | INFO     | 
[2025-06-05 06:08:48] 2025-06-05 03:03:57,481 | INFO     | job summary report
[2025-06-05 06:08:48] 2025-06-05 03:03:57,481 | INFO     | --------------------------------------------------
[2025-06-05 06:08:48] 2025-06-05 03:03:57,482 | INFO     | PanDA job id: 6679235254
[2025-06-05 06:08:48] 2025-06-05 03:03:57,482 | INFO     | task id: 45006595
[2025-06-05 06:08:48] 2025-06-05 03:03:57,482 | INFO     | errors: (none)
[2025-06-05 06:08:48] 2025-06-05 03:03:57,482 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 06:08:48] 2025-06-05 03:03:57,482 | INFO     | pilot state: finished 
[2025-06-05 06:08:48] 2025-06-05 03:03:57,482 | INFO     | transexitcode: 0
[2025-06-05 06:08:48] 2025-06-05 03:03:57,482 | INFO     | exeerrorcode: 0
[2025-06-05 06:08:48] 2025-06-05 03:03:57,482 | INFO     | exeerrordiag: 
[2025-06-05 06:08:48] 2025-06-05 03:03:57,482 | INFO     | exitcode: 0
[2025-06-05 06:08:48] 2025-06-05 03:03:57,482 | INFO     | exitmsg: OK
[2025-06-05 06:08:48] 2025-06-05 03:03:57,483 | INFO     | cpuconsumptiontime: 51876 s
[2025-06-05 06:08:48] 2025-06-05 03:03:57,483 | INFO     | nevents: 400
[2025-06-05 06:08:48] 2025-06-05 03:03:57,483 | INFO     | neventsw: 0
[2025-06-05 06:08:48] 2025-06-05 03:03:57,483 | INFO     | pid: 21287
[2025-06-05 06:08:48] 2025-06-05 03:03:57,483 | INFO     | pgrp: 21287
[2025-06-05 06:08:48] 2025-06-05 03:03:57,483 | INFO     | corecount: 8
[2025-06-05 06:08:48] 2025-06-05 03:03:57,483 | INFO     | event service: False
[2025-06-05 06:08:48] 2025-06-05 03:03:57,483 | INFO     | sizes: {0: 2397066, 1: 2397321, 2: 2397321, 12: 2397349, 23: 2397377, 34: 2397405, 45: 2397561, 55: 2397589, 66: 2397617, 77: 2397645, 88: 2398215, 98: 2398215, 14
[2025-06-05 06:08:48] 2025-06-05 03:03:57,483 | INFO     | --------------------------------------------------
[2025-06-05 06:08:48] 2025-06-05 03:03:57,483 | INFO     | 
[2025-06-05 06:08:48] 2025-06-05 03:03:57,484 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-06-05 06:08:48] 2025-06-05 03:03:57,851 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 06:08:48] 2025-06-05 03:03:57,851 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 06:08:48] 2025-06-05 03:03:57,851 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 06:08:48] 2025-06-05 03:03:57,852 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 06:08:48] 2025-06-05 03:03:57,852 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 06:08:48] 2025-06-05 03:03:57,852 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 06:08:48] 2025-06-05 03:03:57,852 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 06:08:48] 2025-06-05 03:03:57,852 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 06:08:48] 2025-06-05 03:03:57,852 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 06:08:48] 2025-06-05 03:03:57,852 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 06:08:48] 2025-06-05 03:03:57,852 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 06:08:48] 2025-06-05 03:03:57,852 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 06:08:48] 2025-06-05 03:03:57,852 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 06:08:48] 2025-06-05 03:03:57,852 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 06:08:48] 2025-06-05 03:03:57,853 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 06:08:48] 2025-06-05 03:03:57,853 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 06:08:48] 2025-06-05 03:03:57,853 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 06:08:48] 2025-06-05 03:03:57,853 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 06:08:48] 2025-06-05 03:03:57,853 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 06:08:48] 2025-06-05 03:03:57,853 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 06:08:48] 2025-06-05 03:03:57,853 | INFO     | job 6679235254 has completed (purged errors)
[2025-06-05 06:08:48] 2025-06-05 03:03:57,853 | INFO     | overall cleanup function is called
[2025-06-05 06:08:48] 2025-06-05 03:03:58,862 | INFO     | --- collectZombieJob: --- 10, [21287]
[2025-06-05 06:08:48] 2025-06-05 03:03:58,863 | INFO     | zombie collector waiting for pid 21287
[2025-06-05 06:08:48] 2025-06-05 03:03:58,863 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 06:08:48] 2025-06-05 03:03:58,863 | INFO     | collected zombie processes
[2025-06-05 06:08:48] 2025-06-05 03:03:58,863 | INFO     | will attempt to kill all subprocesses of pid=21287
[2025-06-05 06:08:48] 2025-06-05 03:03:58,978 | INFO     | process IDs to be killed: [21287] (in reverse order)
[2025-06-05 06:08:48] 2025-06-05 03:03:59,666 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 06:08:48] 2025-06-05 03:03:59,667 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 06:08:48] 2025-06-05 03:03:59,670 | INFO     | did not find any defunct processes belonging to 21287
[2025-06-05 06:08:48] 2025-06-05 03:03:59,673 | INFO     | did not find any defunct processes belonging to 21287
[2025-06-05 06:08:48] 2025-06-05 03:03:59,673 | INFO     | ready for new job
[2025-06-05 06:08:48] 2025-06-05 03:03:59,674 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 06:08:48] 2025-06-05 03:03:59,676 | INFO     | **************************************
[2025-06-05 06:08:48] 2025-06-05 03:03:59,676 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 06:08:48] 2025-06-05 03:03:59,676 | INFO     | **************************************
[2025-06-05 06:08:48] 2025-06-05 03:03:59,676 | INFO     | 
[2025-06-05 06:08:48] 2025-06-05 03:03:59,679 | INFO     | pilot is running in a VM
[2025-06-05 06:08:48] 2025-06-05 03:03:59,679 | INFO     | architecture information:
[2025-06-05 06:08:48] 2025-06-05 03:03:59,695 | INFO     | executing command: cat /etc/os-release
[2025-06-05 06:08:48] 2025-06-05 03:03:59,973 | INFO     | cat /etc/os-release:
[2025-06-05 06:08:48] NAME="CentOS Linux"
[2025-06-05 06:08:48] VERSION="7 (Core)"
[2025-06-05 06:08:48] ID="centos"
[2025-06-05 06:08:48] ID_LIKE="rhel fedora"
[2025-06-05 06:08:48] VERSION_ID="7"
[2025-06-05 06:08:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 06:08:48] ANSI_COLOR="0;31"
[2025-06-05 06:08:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 06:08:48] HOME_URL="https://www.centos.org/"
[2025-06-05 06:08:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 06:08:48] 
[2025-06-05 06:08:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 06:08:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 06:08:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 06:08:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 06:08:48] 
[2025-06-05 06:08:48] 2025-06-05 03:03:59,974 | INFO     | **************************************
[2025-06-05 06:08:48] 2025-06-05 03:04:00,478 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-06-05 06:08:48] 2025-06-05 03:04:00,742 | INFO     | sufficient remaining disk space (497666752512 B)
[2025-06-05 06:08:48] 2025-06-05 03:04:00,742 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 06:08:48] 2025-06-05 03:04:00,743 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 06:08:48] 2025-06-05 03:04:00,743 | INFO     | update_server=False
[2025-06-05 06:08:48] 2025-06-05 03:04:00,743 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 06:08:48] 2025-06-05 03:04:00,744 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 06:08:48] 2025-06-05 03:04:00,745 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 06:08:48] 2025-06-05 03:04:00,745 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 06:08:48] 2025-06-05 03:04:00,745 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 06:08:48] 2025-06-05 03:04:00,916 | INFO     | all job control threads have been joined
[2025-06-05 06:08:48] 2025-06-05 03:04:01,009 | INFO     | all data control threads have been joined
[2025-06-05 06:08:48] 2025-06-05 03:04:01,209 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 06:08:48] 2025-06-05 03:04:01,210 | INFO     | aborting loop
[2025-06-05 06:08:48] 2025-06-05 03:04:01,505 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 06:08:48] 2025-06-05 03:04:01,749 | INFO     | [job] retrieve thread has finished
[2025-06-05 06:08:48] 2025-06-05 03:04:01,922 | INFO     | [job] control thread has finished
[2025-06-05 06:08:48] 2025-06-05 03:04:01,979 | INFO     | all payload control threads have been joined
[2025-06-05 06:08:48] 2025-06-05 03:04:01,984 | INFO     | [job] validate thread has finished
[2025-06-05 06:08:48] 2025-06-05 03:04:01,986 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 06:08:48] 2025-06-05 03:04:02,014 | INFO     | [data] control thread has finished
[2025-06-05 06:08:48] 2025-06-05 03:04:02,182 | INFO     | [payload] failed_post thread has finished
[2025-06-05 06:08:48] 2025-06-05 03:04:02,215 | INFO     | [job] job monitor thread has finished
[2025-06-05 06:08:48] 2025-06-05 03:04:02,375 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 06:08:48] 2025-06-05 03:04:02,496 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 06:08:48] 2025-06-05 03:04:02,505 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 06:08:48] 2025-06-05 03:04:02,697 | INFO     | [payload] validate_post thread has finished
[2025-06-05 06:08:48] 2025-06-05 03:04:02,853 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 06:08:48] 2025-06-05 03:04:02,947 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 06:08:48] 2025-06-05 03:04:02,985 | INFO     | [payload] control thread has finished
[2025-06-05 06:08:48] 2025-06-05 03:04:03,025 | INFO     | [data] copytool_in thread has finished
[2025-06-05 06:08:48] 2025-06-05 03:04:03,502 | INFO     | [job] queue monitor thread has finished
[2025-06-05 06:08:48] 2025-06-05 03:04:03,512 | INFO     | [data] copytool_out thread has finished
[2025-06-05 06:08:48] 2025-06-05 03:04:06,957 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 06:08:48] 2025-06-05 03:04:07,798 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140449940367168)>', '<ExcThread(monitor, started 140449499039488)>']
[2025-06-05 06:08:48] 2025-06-05 03:04:08,792 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 06:08:48] 2025-06-05 03:04:08,793 | INFO     | [monitor] control thread has ended
[2025-06-05 06:08:48] 2025-06-05 03:04:12,824 | INFO     | all workflow threads have been joined
[2025-06-05 06:08:48] 2025-06-05 03:04:12,825 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 06:08:48] 2025-06-05 03:04:12,825 | INFO     | traces error code: 0
[2025-06-05 06:08:48] 2025-06-05 03:04:12,825 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 06:08:48] 2025-06-05 03:04:13,279 [wrapper] ==== pilot stdout END ====
[2025-06-05 06:08:48] 2025-06-05 03:04:13,365 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 06:08:48] 2025-06-05 03:04:13,404 [wrapper] pilotpid: 8675
[2025-06-05 06:08:48] 2025-06-05 03:04:13,508 [wrapper] Pilot exit status: 0
[2025-06-05 06:08:48] 2025-06-05 03:04:13,995 [wrapper] pandaids: 6679235254
[2025-06-05 06:08:48] 2025-06-05 03:04:14,987 [wrapper] cleanup supervisor_pilot 20571 8676
[2025-06-05 06:08:48] 2025-06-05 03:04:15,086 [wrapper] Test setup, not cleaning
[2025-06-05 06:08:48] 2025-06-05 03:04:15,194 [wrapper] apfmon messages muted
[2025-06-05 06:08:48] 2025-06-05 03:04:15,282 [wrapper] ==== wrapper stdout END ====
[2025-06-05 06:08:48] 2025-06-05 03:04:15,370 [wrapper] ==== wrapper stderr END ====
[2025-06-05 06:08:48]  *** Error codes and diagnostics ***
[2025-06-05 06:08:48]     "exeErrorCode": 0,
[2025-06-05 06:08:48]     "exeErrorDiag": "",
[2025-06-05 06:08:48]     "pilotErrorCode": 0,
[2025-06-05 06:08:48]     "pilotErrorDiag": "",
[2025-06-05 06:08:48]  *** Listing of results directory ***
[2025-06-05 06:08:48] total 392200
[2025-06-05 06:08:48] -rw-r--r--. 1 boinc boinc    495897 Jun  4 10:46 pilot3.tar.gz
[2025-06-05 06:08:48] -rwx------. 1 boinc boinc     37140 Jun  4 10:56 runpilot2-wrapper.sh
[2025-06-05 06:08:48] -rw-r--r--. 1 boinc boinc      5111 Jun  4 10:56 queuedata.json
[2025-06-05 06:08:48] -rw-r--r--. 1 boinc boinc       100 Jun  4 23:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 06:08:48] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 23:21 run_atlas
[2025-06-05 06:08:48] -rw-r--r--. 1 boinc boinc       105 Jun  4 23:21 job.xml
[2025-06-05 06:08:48] -rw-r--r--. 2 boinc boinc 214803524 Jun  4 23:21 EVNT.45006593._001581.pool.root.1
[2025-06-05 06:08:48] -rw-r--r--. 1 boinc boinc      6392 Jun  4 23:21 init_data.xml
[2025-06-05 06:08:48] -rw-r--r--. 2 boinc boinc     15093 Jun  4 23:21 start_atlas.sh
[2025-06-05 06:08:48] drwxrwx--x. 2 boinc boinc        68 Jun  4 23:21 shared
[2025-06-05 06:08:48] -rw-r--r--. 2 boinc boinc    508878 Jun  4 23:21 input.tar.gz
[2025-06-05 06:08:48] -rw-r--r--. 1 boinc boinc         0 Jun  4 23:21 boinc_lockfile
[2025-06-05 06:08:48] -rw-r--r--. 1 boinc boinc      2525 Jun  5 00:56 pandaJob.out
[2025-06-05 06:08:48] -rw-------. 1 boinc boinc    987032 Jun  5 00:59 agis_schedconf.cvmfs.json
[2025-06-05 06:08:48] drwx------. 4 boinc boinc      4096 Jun  5 00:59 pilot3
[2025-06-05 06:08:48] -rw-------. 1 boinc boinc 179677819 Jun  5 05:01 HITS.45006595._056040.pool.root.1
[2025-06-05 06:08:48] -rw-r--r--. 1 boinc boinc       531 Jun  5 05:01 boinc_task_state.xml
[2025-06-05 06:08:48] -rw-------. 1 boinc boinc      1016 Jun  5 05:02 memory_monitor_summary.json
[2025-06-05 06:08:48] -rw-------. 1 boinc boinc   1598969 Jun  5 05:02 agis_ddmendpoints.agis.ALL.json
[2025-06-05 06:08:48] -rw-------. 1 boinc boinc    405190 Jun  5 05:02 log.45006595._056040.job.log.tgz.1
[2025-06-05 06:08:48] -rw-------. 1 boinc boinc        95 Jun  5 05:03 pilot_heartbeat.json
[2025-06-05 06:08:48] -rw-------. 1 boinc boinc      7691 Jun  5 05:03 heartbeat.json
[2025-06-05 06:08:48] -rw-------. 1 boinc boinc      4540 Jun  5 05:04 pilotlog.txt
[2025-06-05 06:08:48] -rw-------. 1 boinc boinc   1249854 Jun  5 05:04 log.45006595._056040.job.log.1
[2025-06-05 06:08:48] -rw-------. 1 boinc boinc       357 Jun  5 05:04 output.list
[2025-06-05 06:08:48] -rw-r--r--. 1 boinc boinc       620 Jun  5 05:04 runtime_log
[2025-06-05 06:08:48] -rw-------. 1 boinc boinc   1679360 Jun  5 05:04 result.tar.gz
[2025-06-05 06:08:48] -rw-r--r--. 1 boinc boinc      8673 Jun  5 05:04 runtime_log.err
[2025-06-05 06:08:48] -rw-------. 1 boinc boinc       657 Jun  5 05:04 53wLDm45yg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmSrnKDmlVbcnn.diag
[2025-06-05 06:08:48] -rw-r--r--. 1 boinc boinc      8192 Jun  5 06:08 boinc_mmap_file
[2025-06-05 06:08:48] -rw-r--r--. 1 boinc boinc        28 Jun  5 06:08 wrapper_checkpoint.txt
[2025-06-05 06:08:48] -rw-r--r--. 1 boinc boinc     20510 Jun  5 06:08 stderr.txt
[2025-06-05 06:08:48] HITS file was successfully produced:
[2025-06-05 06:08:48] -rw-------. 1 boinc boinc 179677819 Jun  5 05:01 shared/HITS.pool.root.1
[2025-06-05 06:08:48]  *** Contents of shared directory: ***
[2025-06-05 06:08:48] total 387396
[2025-06-05 06:08:48] -rw-r--r--. 2 boinc boinc 214803524 Jun  4 23:21 ATLAS.root_0
[2025-06-05 06:08:48] -rw-r--r--. 2 boinc boinc     15093 Jun  4 23:21 start_atlas.sh
[2025-06-05 06:08:48] -rw-r--r--. 2 boinc boinc    508878 Jun  4 23:21 input.tar.gz
[2025-06-05 06:08:48] -rw-------. 1 boinc boinc 179677819 Jun  5 05:01 HITS.pool.root.1
[2025-06-05 06:08:48] -rw-------. 1 boinc boinc   1679360 Jun  5 05:04 result.tar.gz
06:08:50 (15430): run_atlas exited; CPU time 52078.409203
06:08:50 (15430): called boinc_finish(0)

</stderr_txt>
]]>

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