Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:04:37 (14789): wrapper (7.7.26015): starting
09:04:37 (14789): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 09:04:37] Arguments: --nthreads 8
[2025-06-04 09:04:37] Threads: 8
[2025-06-04 09:04:37] Checking for CVMFS
[2025-06-04 09:04:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 09:04:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 09:04:38] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 09:04:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 09:04:38] 2.11.2.0 74184 12730 350484 146780 0 255 18364214 18432001 12698 130560 0 75756811 99.623 56683752 42704 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 09:04:38] CVMFS is ok
[2025-06-04 09:04:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 09:04:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 09:04:38] Further information can be found at the LHC@home message board.
[2025-06-04 09:04:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 09:04:38] Checking for apptainer binary...
[2025-06-04 09:04:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 09:04:38] Running /usr/bin/apptainer --version
[2025-06-04 09:04:38] apptainer version 1.3.2-1.el7
[2025-06-04 09:04:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 09:04:39] c-212-13.aglt2.org
[2025-06-04 09:04:39] apptainer works
[2025-06-04 09:04:39] Set ATHENA_PROC_NUMBER=8
[2025-06-04 09:04:39] Set ATHENA_CORE_NUMBER=8
[2025-06-04 09:04:39] Starting ATLAS job with PandaID=6679186568
[2025-06-04 09:04:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 10:11:31]  *** The last 200 lines of the pilot log: ***
[2025-06-04 10:11:31]  protocol_id=None
[2025-06-04 10:11:31]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 10:11:31]  replicas=None
[2025-06-04 10:11:31]  scope=mc23_13p6TeV
[2025-06-04 10:11:31]  status=None
[2025-06-04 10:11:31]  status_code=0
[2025-06-04 10:11:31]  storage_token=
[2025-06-04 10:11:31]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6679186568/log.45006595._055973.job.log.tgz.1
[2025-06-04 10:11:31]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/23/e8/log.45006595._055973.job.log.tgz.1
[2025-06-04 10:11:31]  workdir=None
[2025-06-04 10:11:31] ]
[2025-06-04 10:11:31] 2025-06-04 14:10:57,368 | INFO     | transferring file log.45006595._055973.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6679186568/log.45006595._055973.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 10:11:31] 2025-06-04 14:10:57,368 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6679186568/log.45006595._055973.job.log.tgz.1 /tmp/boinchome/slots/3/log.45006595._055973.job
[2025-06-04 10:11:31] 2025-06-04 14:10:57,464 | INFO     | adding to output.list: log.45006595._055973.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/23/e8/log.45006595._055973.job.log.tg
[2025-06-04 10:11:31] 2025-06-04 14:10:57,465 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 10:11:31] 2025-06-04 14:10:57,465 | INFO     | summary of transferred files:
[2025-06-04 10:11:31] 2025-06-04 14:10:57,465 | INFO     |  -- lfn=log.45006595._055973.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 10:11:31] 2025-06-04 14:10:57,465 | INFO     | stage-out finished correctly
[2025-06-04 10:11:31] 2025-06-04 14:10:59,214 | INFO     | monitor loop #299: job 0:6679186568 is in state 'finished'
[2025-06-04 10:11:31] 2025-06-04 14:10:59,214 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 10:11:31] 2025-06-04 14:10:59,545 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 10:11:31] 2025-06-04 14:10:59,785 | INFO     | job 6679186568 has state=finished
[2025-06-04 10:11:31] 2025-06-04 14:10:59,785 | INFO     | preparing for final server update for job 6679186568 in state='finished'
[2025-06-04 10:11:31] 2025-06-04 14:10:59,786 | INFO     | this job has now completed (state=finished)
[2025-06-04 10:11:31] 2025-06-04 14:10:59,786 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 10:11:31] 2025-06-04 14:10:59,786 | INFO     | log transfer has been attempted: DONE
[2025-06-04 10:11:31] 2025-06-04 14:10:59,786 | INFO     | job 6679186568 has finished - writing final server update
[2025-06-04 10:11:31] 2025-06-04 14:10:59,786 | INFO     | total number of processed events: 400 (read)
[2025-06-04 10:11:31] 2025-06-04 14:10:59,789 | INFO     | executing command: lscpu
[2025-06-04 10:11:31] 2025-06-04 14:10:59,825 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 10:11:31] 2025-06-04 14:11:01,717 | INFO     | monitor loop #300: job 0:6679186568 is in state 'finished'
[2025-06-04 10:11:31] 2025-06-04 14:11:01,718 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 10:11:31] 2025-06-04 14:11:04,221 | INFO     | monitor loop #301: job 0:6679186568 is in state 'finished'
[2025-06-04 10:11:31] 2025-06-04 14:11:04,221 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 10:11:31] 2025-06-04 14:11:04,646 | INFO     | PID=18447 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-04 10:11:31] 2025-06-04 14:11:04,646 | INFO     | .. there are 18 such processes running
[2025-06-04 10:11:31] 2025-06-04 14:11:06,724 | INFO     | monitor loop #302: job 0:6679186568 is in state 'finished'
[2025-06-04 10:11:31] 2025-06-04 14:11:06,724 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 10:11:31] 2025-06-04 14:11:09,226 | INFO     | monitor loop #303: job 0:6679186568 is in state 'finished'
[2025-06-04 10:11:31] 2025-06-04 14:11:09,226 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 10:11:31] 2025-06-04 14:11:09,815 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 10:11:31] 2025-06-04 14:11:09,816 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6679186568/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 10:11:31] 2025-06-04 14:11:09,816 | INFO     | extracted standard info from prmon json
[2025-06-04 10:11:31] 2025-06-04 14:11:09,816 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 10:11:31] 2025-06-04 14:11:09,816 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 10:11:31] 2025-06-04 14:11:09,817 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 10:11:31] 2025-06-04 14:11:09,817 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 10:11:31] 2025-06-04 14:11:09,818 | INFO     | fitting pss+swap vs Time
[2025-06-04 10:11:31] 2025-06-04 14:11:09,818 | INFO     | sum of square deviations: 60482994.5
[2025-06-04 10:11:31] 2025-06-04 14:11:09,818 | INFO     | sum of deviations: 223827666.0
[2025-06-04 10:11:31] 2025-06-04 14:11:09,818 | INFO     | mean x: 1749044385.5
[2025-06-04 10:11:31] 2025-06-04 14:11:09,818 | INFO     | mean y: 2484017.5862068967
[2025-06-04 10:11:31] 2025-06-04 14:11:09,819 | INFO     | -- intersect: -6470153882.921005
[2025-06-04 10:11:31] 2025-06-04 14:11:09,819 | INFO     | intersect: -6470153882.921005
[2025-06-04 10:11:31] 2025-06-04 14:11:09,819 | INFO     | chi2: 0.0007585045938672284
[2025-06-04 10:11:31] 2025-06-04 14:11:09,819 | INFO     | -- intersect: -6470153882.921005
[2025-06-04 10:11:31] 2025-06-04 14:11:09,819 | INFO     | current memory leak: 3.70 B/s (using 58 data points, chi2=0.00)
[2025-06-04 10:11:31] 2025-06-04 14:11:09,819 | INFO     | ..............................
[2025-06-04 10:11:31] 2025-06-04 14:11:09,819 | INFO     | . Timing measurements:
[2025-06-04 10:11:31] 2025-06-04 14:11:09,819 | INFO     | . get job = 0 s
[2025-06-04 10:11:31] 2025-06-04 14:11:09,819 | INFO     | . initial setup = 3 s
[2025-06-04 10:11:31] 2025-06-04 14:11:09,820 | INFO     | . payload setup = 15 s
[2025-06-04 10:11:31] 2025-06-04 14:11:09,820 | INFO     | . stage-in = 0 s
[2025-06-04 10:11:31] 2025-06-04 14:11:09,820 | INFO     | . payload execution = 3919 s
[2025-06-04 10:11:31] 2025-06-04 14:11:09,820 | INFO     | . stage-out = 0 s
[2025-06-04 10:11:31] 2025-06-04 14:11:09,820 | INFO     | . log creation = 0 s
[2025-06-04 10:11:31] 2025-06-04 14:11:09,820 | INFO     | ..............................
[2025-06-04 10:11:31] 2025-06-04 14:11:09,895 | INFO     | 
[2025-06-04 10:11:31] 2025-06-04 14:11:09,896 | INFO     | job summary report
[2025-06-04 10:11:31] 2025-06-04 14:11:09,896 | INFO     | --------------------------------------------------
[2025-06-04 10:11:31] 2025-06-04 14:11:09,896 | INFO     | PanDA job id: 6679186568
[2025-06-04 10:11:31] 2025-06-04 14:11:09,896 | INFO     | task id: 45006595
[2025-06-04 10:11:31] 2025-06-04 14:11:09,896 | INFO     | errors: (none)
[2025-06-04 10:11:31] 2025-06-04 14:11:09,896 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 10:11:31] 2025-06-04 14:11:09,896 | INFO     | pilot state: finished 
[2025-06-04 10:11:31] 2025-06-04 14:11:09,896 | INFO     | transexitcode: 0
[2025-06-04 10:11:31] 2025-06-04 14:11:09,896 | INFO     | exeerrorcode: 0
[2025-06-04 10:11:31] 2025-06-04 14:11:09,896 | INFO     | exeerrordiag: 
[2025-06-04 10:11:31] 2025-06-04 14:11:09,896 | INFO     | exitcode: 0
[2025-06-04 10:11:31] 2025-06-04 14:11:09,896 | INFO     | exitmsg: OK
[2025-06-04 10:11:31] 2025-06-04 14:11:09,896 | INFO     | cpuconsumptiontime: 26834 s
[2025-06-04 10:11:31] 2025-06-04 14:11:09,896 | INFO     | nevents: 400
[2025-06-04 10:11:31] 2025-06-04 14:11:09,896 | INFO     | neventsw: 0
[2025-06-04 10:11:31] 2025-06-04 14:11:09,896 | INFO     | pid: 26057
[2025-06-04 10:11:31] 2025-06-04 14:11:09,896 | INFO     | pgrp: 26057
[2025-06-04 10:11:31] 2025-06-04 14:11:09,896 | INFO     | corecount: 8
[2025-06-04 10:11:31] 2025-06-04 14:11:09,896 | INFO     | event service: False
[2025-06-04 10:11:31] 2025-06-04 14:11:09,896 | INFO     | sizes: {0: 2396464, 1: 2397320, 6: 2397526, 12: 2397554, 3938: 2423410, 3939: 2423409, 3940: 2432534, 3942: 2432590, 3952: 2432760}
[2025-06-04 10:11:31] 2025-06-04 14:11:09,896 | INFO     | --------------------------------------------------
[2025-06-04 10:11:31] 2025-06-04 14:11:09,896 | INFO     | 
[2025-06-04 10:11:31] 2025-06-04 14:11:09,896 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-06-04 10:11:31] 2025-06-04 14:11:09,925 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 10:11:31] 2025-06-04 14:11:09,925 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 10:11:31] 2025-06-04 14:11:09,925 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 10:11:31] 2025-06-04 14:11:09,925 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 10:11:31] 2025-06-04 14:11:09,926 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 10:11:31] 2025-06-04 14:11:09,926 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 10:11:31] 2025-06-04 14:11:09,926 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 10:11:31] 2025-06-04 14:11:09,926 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 10:11:31] 2025-06-04 14:11:09,926 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 10:11:31] 2025-06-04 14:11:09,926 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 10:11:31] 2025-06-04 14:11:09,926 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 10:11:31] 2025-06-04 14:11:09,926 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 10:11:31] 2025-06-04 14:11:09,926 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 10:11:31] 2025-06-04 14:11:09,926 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 10:11:31] 2025-06-04 14:11:09,926 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 10:11:31] 2025-06-04 14:11:09,926 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 10:11:31] 2025-06-04 14:11:09,926 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 10:11:31] 2025-06-04 14:11:09,926 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 10:11:31] 2025-06-04 14:11:09,926 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 10:11:31] 2025-06-04 14:11:09,926 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 10:11:31] 2025-06-04 14:11:09,926 | INFO     | job 6679186568 has completed (purged errors)
[2025-06-04 10:11:31] 2025-06-04 14:11:09,926 | INFO     | overall cleanup function is called
[2025-06-04 10:11:31] 2025-06-04 14:11:10,934 | INFO     | --- collectZombieJob: --- 10, [26057]
[2025-06-04 10:11:31] 2025-06-04 14:11:10,934 | INFO     | zombie collector waiting for pid 26057
[2025-06-04 10:11:31] 2025-06-04 14:11:10,934 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 10:11:31] 2025-06-04 14:11:10,934 | INFO     | collected zombie processes
[2025-06-04 10:11:31] 2025-06-04 14:11:10,934 | INFO     | will attempt to kill all subprocesses of pid=26057
[2025-06-04 10:11:31] 2025-06-04 14:11:11,113 | INFO     | process IDs to be killed: [26057] (in reverse order)
[2025-06-04 10:11:31] 2025-06-04 14:11:11,735 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 10:11:31] 2025-06-04 14:11:11,736 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 10:11:31] 2025-06-04 14:11:11,744 | INFO     | did not find any defunct processes belonging to 26057
[2025-06-04 10:11:31] 2025-06-04 14:11:11,751 | INFO     | did not find any defunct processes belonging to 26057
[2025-06-04 10:11:31] 2025-06-04 14:11:11,751 | INFO     | ready for new job
[2025-06-04 10:11:31] 2025-06-04 14:11:11,751 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 10:11:31] 2025-06-04 14:11:11,752 | INFO     | **************************************
[2025-06-04 10:11:31] 2025-06-04 14:11:11,752 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 10:11:31] 2025-06-04 14:11:11,752 | INFO     | **************************************
[2025-06-04 10:11:31] 2025-06-04 14:11:11,753 | INFO     | 
[2025-06-04 10:11:31] 2025-06-04 14:11:11,757 | INFO     | architecture information:
[2025-06-04 10:11:31] 2025-06-04 14:11:11,757 | INFO     | executing command: cat /etc/os-release
[2025-06-04 10:11:31] 2025-06-04 14:11:11,882 | INFO     | cat /etc/os-release:
[2025-06-04 10:11:31] NAME="CentOS Linux"
[2025-06-04 10:11:31] VERSION="7 (Core)"
[2025-06-04 10:11:31] ID="centos"
[2025-06-04 10:11:31] ID_LIKE="rhel fedora"
[2025-06-04 10:11:31] VERSION_ID="7"
[2025-06-04 10:11:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 10:11:31] ANSI_COLOR="0;31"
[2025-06-04 10:11:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 10:11:31] HOME_URL="https://www.centos.org/"
[2025-06-04 10:11:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 10:11:31] 
[2025-06-04 10:11:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 10:11:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 10:11:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 10:11:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 10:11:31] 
[2025-06-04 10:11:31] 2025-06-04 14:11:11,882 | INFO     | **************************************
[2025-06-04 10:11:31] 2025-06-04 14:11:12,385 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-06-04 10:11:31] 2025-06-04 14:11:12,546 | INFO     | sufficient remaining disk space (103901298688 B)
[2025-06-04 10:11:31] 2025-06-04 14:11:12,546 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 10:11:31] 2025-06-04 14:11:12,546 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 10:11:31] 2025-06-04 14:11:12,546 | INFO     | update_server=False
[2025-06-04 10:11:31] 2025-06-04 14:11:12,546 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 10:11:31] 2025-06-04 14:11:12,570 | INFO     | all data control threads have been joined
[2025-06-04 10:11:31] 2025-06-04 14:11:12,667 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 10:11:31] 2025-06-04 14:11:12,667 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 10:11:31] 2025-06-04 14:11:12,667 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 10:11:31] 2025-06-04 14:11:12,734 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:11:31] 2025-06-04 14:11:12,734 | INFO     | aborting loop
[2025-06-04 10:11:31] 2025-06-04 14:11:13,052 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 10:11:31] 2025-06-04 14:11:13,552 | INFO     | [job] retrieve thread has finished
[2025-06-04 10:11:31] 2025-06-04 14:11:13,575 | INFO     | [data] control thread has finished
[2025-06-04 10:11:31] 2025-06-04 14:11:13,739 | INFO     | [job] job monitor thread has finished
[2025-06-04 10:11:31] 2025-06-04 14:11:13,762 | INFO     | all job control threads have been joined
[2025-06-04 10:11:31] 2025-06-04 14:11:13,769 | INFO     | all payload control threads have been joined
[2025-06-04 10:11:31] 2025-06-04 14:11:13,795 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 10:11:31] 2025-06-04 14:11:13,795 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 10:11:31] 2025-06-04 14:11:13,868 | INFO     | [job] validate thread has finished
[2025-06-04 10:11:31] 2025-06-04 14:11:13,892 | INFO     | [payload] validate_post thread has finished
[2025-06-04 10:11:31] 2025-06-04 14:11:14,260 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 10:11:31] 2025-06-04 14:11:14,633 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 10:11:31] 2025-06-04 14:11:14,700 | INFO     | [data] copytool_in thread has finished
[2025-06-04 10:11:31] 2025-06-04 14:11:14,763 | INFO     | [job] control thread has finished
[2025-06-04 10:11:31] 2025-06-04 14:11:14,774 | INFO     | [payload] control thread has finished
[2025-06-04 10:11:31] 2025-06-04 14:11:14,815 | INFO     | [payload] failed_post thread has finished
[2025-06-04 10:11:31] 2025-06-04 14:11:14,905 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:11:31] 2025-06-04 14:11:15,057 | INFO     | [data] copytool_out thread has finished
[2025-06-04 10:11:31] 2025-06-04 14:11:15,910 | INFO     | [job] queue monitor thread has finished
[2025-06-04 10:11:31] 2025-06-04 14:11:18,639 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 10:11:31] 2025-06-04 14:11:23,036 | INFO     | job.realtimelogging is not enabled
[2025-06-04 10:11:31] 2025-06-04 14:11:24,042 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 10:11:31] 2025-06-04 14:11:26,083 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140026810939200)>', '<ExcThread(monitor, started 140026377651968)>']
[2025-06-04 10:11:31] 2025-06-04 14:11:26,738 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 10:11:31] 2025-06-04 14:11:26,738 | INFO     | [monitor] control thread has ended
[2025-06-04 10:11:31] 2025-06-04 14:11:31,109 | INFO     | all workflow threads have been joined
[2025-06-04 10:11:31] 2025-06-04 14:11:31,109 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 10:11:31] 2025-06-04 14:11:31,110 | INFO     | traces error code: 0
[2025-06-04 10:11:31] 2025-06-04 14:11:31,110 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 10:11:31] 2025-06-04 14:11:31,194 [wrapper] ==== pilot stdout END ====
[2025-06-04 10:11:31] 2025-06-04 14:11:31,197 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 10:11:31] 2025-06-04 14:11:31,198 [wrapper] pilotpid: 18447
[2025-06-04 10:11:31] 2025-06-04 14:11:31,228 [wrapper] Pilot exit status: 0
[2025-06-04 10:11:31] 2025-06-04 14:11:31,371 [wrapper] pandaids: 6679186568
[2025-06-04 10:11:31] 2025-06-04 14:11:31,418 [wrapper] cleanup supervisor_pilot 82870 18448
[2025-06-04 10:11:31] 2025-06-04 14:11:31,425 [wrapper] Test setup, not cleaning
[2025-06-04 10:11:31] 2025-06-04 14:11:31,466 [wrapper] apfmon messages muted
[2025-06-04 10:11:31] 2025-06-04 14:11:31,469 [wrapper] ==== wrapper stdout END ====
[2025-06-04 10:11:31] 2025-06-04 14:11:31,471 [wrapper] ==== wrapper stderr END ====
[2025-06-04 10:11:31]  *** Error codes and diagnostics ***
[2025-06-04 10:11:31]     "exeErrorCode": 0,
[2025-06-04 10:11:31]     "exeErrorDiag": "",
[2025-06-04 10:11:31]     "pilotErrorCode": 0,
[2025-06-04 10:11:31]     "pilotErrorDiag": "",
[2025-06-04 10:11:31]  *** Listing of results directory ***
[2025-06-04 10:11:31] total 389040
[2025-06-04 10:11:31] -rw-r--r-- 1 boincer umatlas    495897 Jun  4 04:46 pilot3.tar.gz
[2025-06-04 10:11:31] -rw-r--r-- 1 boincer umatlas      5111 Jun  4 04:51 queuedata.json
[2025-06-04 10:11:31] -rwx------ 1 boincer umatlas     37140 Jun  4 04:52 runpilot2-wrapper.sh
[2025-06-04 10:11:31] -rw-r--r-- 1 boincer umatlas       100 Jun  4 09:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 10:11:31] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 09:04 run_atlas
[2025-06-04 10:11:31] -rw-r--r-- 1 boincer umatlas       105 Jun  4 09:04 job.xml
[2025-06-04 10:11:31] -rw-r--r-- 2 boincer umatlas 215624659 Jun  4 09:04 EVNT.45006593._001594.pool.root.1
[2025-06-04 10:11:31] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 09:04 start_atlas.sh
[2025-06-04 10:11:31] drwxrwx--x 2 boincer umatlas      4096 Jun  4 09:04 shared
[2025-06-04 10:11:31] -rw-r--r-- 2 boincer umatlas    508889 Jun  4 09:04 input.tar.gz
[2025-06-04 10:11:31] -rw-r--r-- 1 boincer umatlas         0 Jun  4 09:04 boinc_lockfile
[2025-06-04 10:11:31] -rw-r--r-- 1 boincer umatlas      2525 Jun  4 09:04 pandaJob.out
[2025-06-04 10:11:31] -rw------- 1 boincer umatlas    986811 Jun  4 09:04 agis_schedconf.cvmfs.json
[2025-06-04 10:11:31] -rw------- 1 boincer umatlas   1598969 Jun  4 09:05 agis_ddmendpoints.agis.ALL.json
[2025-06-04 10:11:31] drwx------ 4 boincer umatlas      4096 Jun  4 09:05 pilot3
[2025-06-04 10:11:31] -rw-r--r-- 1 boincer umatlas      6388 Jun  4 10:03 init_data.xml
[2025-06-04 10:11:31] -rw------- 1 boincer umatlas 177521169 Jun  4 10:10 HITS.45006595._055973.pool.root.1
[2025-06-04 10:11:31] -rw-r--r-- 1 boincer umatlas       529 Jun  4 10:10 boinc_task_state.xml
[2025-06-04 10:11:31] -rw------- 1 boincer umatlas      1067 Jun  4 10:10 memory_monitor_summary.json
[2025-06-04 10:11:31] -rw------- 1 boincer umatlas    300398 Jun  4 10:10 log.45006595._055973.job.log.tgz.1
[2025-06-04 10:11:31] -rw------- 1 boincer umatlas        95 Jun  4 10:11 pilot_heartbeat.json
[2025-06-04 10:11:31] -rw------- 1 boincer umatlas      7732 Jun  4 10:11 heartbeat.json
[2025-06-04 10:11:31] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 10:11 boinc_mmap_file
[2025-06-04 10:11:31] -rw-r--r-- 1 boincer umatlas        27 Jun  4 10:11 wrapper_checkpoint.txt
[2025-06-04 10:11:31] -rw------- 1 boincer umatlas      4426 Jun  4 10:11 pilotlog.txt
[2025-06-04 10:11:31] -rw------- 1 boincer umatlas    398429 Jun  4 10:11 log.45006595._055973.job.log.1
[2025-06-04 10:11:31] -rw------- 1 boincer umatlas       357 Jun  4 10:11 output.list
[2025-06-04 10:11:31] -rw-r--r-- 1 boincer umatlas       620 Jun  4 10:11 runtime_log
[2025-06-04 10:11:31] -rw------- 1 boincer umatlas    716800 Jun  4 10:11 result.tar.gz
[2025-06-04 10:11:31] -rw-r--r-- 1 boincer umatlas      8659 Jun  4 10:11 runtime_log.err
[2025-06-04 10:11:31] -rw------- 1 boincer umatlas       655 Jun  4 10:11 DEeNDmz1yg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm3qnKDmXaLqan.diag
[2025-06-04 10:11:31] -rw-r--r-- 1 boincer umatlas     21804 Jun  4 10:11 stderr.txt
[2025-06-04 10:11:31] HITS file was successfully produced:
[2025-06-04 10:11:31] -rw------- 1 boincer umatlas 177521169 Jun  4 10:10 shared/HITS.pool.root.1
[2025-06-04 10:11:31]  *** Contents of shared directory: ***
[2025-06-04 10:11:31] total 385160
[2025-06-04 10:11:31] -rw-r--r-- 2 boincer umatlas 215624659 Jun  4 09:04 ATLAS.root_0
[2025-06-04 10:11:31] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 09:04 start_atlas.sh
[2025-06-04 10:11:31] -rw-r--r-- 2 boincer umatlas    508889 Jun  4 09:04 input.tar.gz
[2025-06-04 10:11:31] -rw------- 1 boincer umatlas 177521169 Jun  4 10:10 HITS.pool.root.1
[2025-06-04 10:11:31] -rw------- 1 boincer umatlas    716800 Jun  4 10:11 result.tar.gz
10:11:33 (14789): run_atlas exited; CPU time 26780.844361
10:11:33 (14789): called boinc_finish(0)

</stderr_txt>
]]>

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