Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:58:36 (68862): wrapper (7.7.26015): starting
08:58:36 (68862): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 08:58:36] Arguments: --nthreads 8
[2025-06-04 08:58:36] Threads: 8
[2025-06-04 08:58:36] Checking for CVMFS
[2025-06-04 08:58:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 08:58:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 08:58:36] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 08:58:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 08:58:37] 2.11.2.0 12263 11166 305124 146780 2 388 16564792 18432001 16743 130560 0 86356714 99.312 112852036 59151 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 08:58:37] CVMFS is ok
[2025-06-04 08:58:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 08:58:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 08:58:37] Further information can be found at the LHC@home message board.
[2025-06-04 08:58:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 08:58:37] Checking for apptainer binary...
[2025-06-04 08:58:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 08:58:37] Running /usr/bin/apptainer --version
[2025-06-04 08:58:37] apptainer version 1.3.2-1.el7
[2025-06-04 08:58:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 08:58:38] c-212-14.aglt2.org
[2025-06-04 08:58:38] apptainer works
[2025-06-04 08:58:38] Set ATHENA_PROC_NUMBER=8
[2025-06-04 08:58:38] Set ATHENA_CORE_NUMBER=8
[2025-06-04 08:58:38] Starting ATLAS job with PandaID=6678364357
[2025-06-04 08:58:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 10:09:08]  *** The last 200 lines of the pilot log: ***
[2025-06-04 10:09:08]  lfn=log.45006595._053857.job.log.tgz.1
[2025-06-04 10:09:08]  mtime=0
[2025-06-04 10:09:08]  protocol_id=None
[2025-06-04 10:09:08]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 10:09:08]  replicas=None
[2025-06-04 10:09:08]  scope=mc23_13p6TeV
[2025-06-04 10:09:08]  status=None
[2025-06-04 10:09:08]  status_code=0
[2025-06-04 10:09:08]  storage_token=
[2025-06-04 10:09:08]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6678364357/log.45006595._053857.job.log.tgz.1
[2025-06-04 10:09:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/35/c7/log.45006595._053857.job.log.tgz.1
[2025-06-04 10:09:08]  workdir=None
[2025-06-04 10:09:08] ]
[2025-06-04 10:09:08] 2025-06-04 14:08:41,753 | INFO     | transferring file log.45006595._053857.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6678364357/log.45006595._053857.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 10:09:08] 2025-06-04 14:08:41,753 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6678364357/log.45006595._053857.job.log.tgz.1 /tmp/boinchome/slots/3/log.45006595._053857.job
[2025-06-04 10:09:08] 2025-06-04 14:08:41,772 | INFO     | adding to output.list: log.45006595._053857.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/35/c7/log.45006595._053857.job.log.tg
[2025-06-04 10:09:08] 2025-06-04 14:08:41,772 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 10:09:08] 2025-06-04 14:08:41,773 | INFO     | summary of transferred files:
[2025-06-04 10:09:08] 2025-06-04 14:08:41,773 | INFO     |  -- lfn=log.45006595._053857.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 10:09:08] 2025-06-04 14:08:41,773 | INFO     | stage-out finished correctly
[2025-06-04 10:09:08] 2025-06-04 14:08:42,830 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 10:09:08] 2025-06-04 14:08:42,896 | INFO     | job 6678364357 has state=finished
[2025-06-04 10:09:08] 2025-06-04 14:08:42,896 | INFO     | preparing for final server update for job 6678364357 in state='finished'
[2025-06-04 10:09:08] 2025-06-04 14:08:42,953 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-06-04 10:09:08] 2025-06-04 14:08:42,953 | INFO     | this job has now completed (state=finished)
[2025-06-04 10:09:08] 2025-06-04 14:08:42,954 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 10:09:08] 2025-06-04 14:08:42,954 | INFO     | log transfer has been attempted: DONE
[2025-06-04 10:09:08] 2025-06-04 14:08:42,954 | INFO     | job 6678364357 has finished - writing final server update
[2025-06-04 10:09:08] 2025-06-04 14:08:42,954 | INFO     | total number of processed events: 400 (read)
[2025-06-04 10:09:08] 2025-06-04 14:08:42,959 | INFO     | executing command: lscpu
[2025-06-04 10:09:08] 2025-06-04 14:08:43,003 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 10:09:08] 2025-06-04 14:08:45,745 | WARNING  | process 89920 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 10:09:08] 2025-06-04 14:08:45,746 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6678364357/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 10:09:08] 2025-06-04 14:08:45,991 | INFO     | number of running child processes to parent process 89920: 1
[2025-06-04 10:09:08] 2025-06-04 14:08:45,991 | INFO     | maximum number of monitored processes: 6
[2025-06-04 10:09:08] 2025-06-04 14:08:48,494 | INFO     | monitor loop #312: job 0:6678364357 is in state 'finished'
[2025-06-04 10:09:08] 2025-06-04 14:08:48,495 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 10:09:08] 2025-06-04 14:08:48,720 | INFO     | PID=78230 has CPU usage=10.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-04 10:09:08] 2025-06-04 14:08:48,720 | INFO     | .. there are 25 such processes running
[2025-06-04 10:09:08] 2025-06-04 14:08:48,869 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 10:09:08] 2025-06-04 14:08:48,870 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6678364357/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 10:09:08] 2025-06-04 14:08:48,871 | INFO     | extracted standard info from prmon json
[2025-06-04 10:09:08] 2025-06-04 14:08:48,871 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 10:09:08] 2025-06-04 14:08:48,871 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 10:09:08] 2025-06-04 14:08:48,871 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 10:09:08] 2025-06-04 14:08:48,871 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 10:09:08] 2025-06-04 14:08:48,873 | INFO     | fitting pss+swap vs Time
[2025-06-04 10:09:08] 2025-06-04 14:08:48,873 | INFO     | sum of square deviations: 70364110.0
[2025-06-04 10:09:08] 2025-06-04 14:08:48,874 | INFO     | sum of deviations: -482914734.9999999
[2025-06-04 10:09:08] 2025-06-04 14:08:48,874 | INFO     | mean x: 1749044111.0
[2025-06-04 10:09:08] 2025-06-04 14:08:48,874 | INFO     | mean y: 2488963.049180328
[2025-06-04 10:09:08] 2025-06-04 14:08:48,874 | INFO     | -- intersect: 12006324062.603134
[2025-06-04 10:09:08] 2025-06-04 14:08:48,874 | INFO     | intersect: 12006324062.603134
[2025-06-04 10:09:08] 2025-06-04 14:08:48,874 | INFO     | chi2: 0.0017469216872271428
[2025-06-04 10:09:08] 2025-06-04 14:08:48,874 | INFO     | -- intersect: 12006324062.603134
[2025-06-04 10:09:08] 2025-06-04 14:08:48,874 | INFO     | current memory leak: -6.86 B/s (using 61 data points, chi2=0.00)
[2025-06-04 10:09:08] 2025-06-04 14:08:48,875 | INFO     | ..............................
[2025-06-04 10:09:08] 2025-06-04 14:08:48,875 | INFO     | . Timing measurements:
[2025-06-04 10:09:08] 2025-06-04 14:08:48,875 | INFO     | . get job = 0 s
[2025-06-04 10:09:08] 2025-06-04 14:08:48,875 | INFO     | . initial setup = 2 s
[2025-06-04 10:09:08] 2025-06-04 14:08:48,875 | INFO     | . payload setup = 12 s
[2025-06-04 10:09:08] 2025-06-04 14:08:48,875 | INFO     | . stage-in = 0 s
[2025-06-04 10:09:08] 2025-06-04 14:08:48,875 | INFO     | . payload execution = 4152 s
[2025-06-04 10:09:08] 2025-06-04 14:08:48,875 | INFO     | . stage-out = 0 s
[2025-06-04 10:09:08] 2025-06-04 14:08:48,875 | INFO     | . log creation = 0 s
[2025-06-04 10:09:08] 2025-06-04 14:08:48,875 | INFO     | ..............................
[2025-06-04 10:09:08] 2025-06-04 14:08:48,957 | INFO     | 
[2025-06-04 10:09:08] 2025-06-04 14:08:48,957 | INFO     | job summary report
[2025-06-04 10:09:08] 2025-06-04 14:08:48,958 | INFO     | --------------------------------------------------
[2025-06-04 10:09:08] 2025-06-04 14:08:48,958 | INFO     | PanDA job id: 6678364357
[2025-06-04 10:09:08] 2025-06-04 14:08:48,958 | INFO     | task id: 45006595
[2025-06-04 10:09:08] 2025-06-04 14:08:48,958 | INFO     | errors: (none)
[2025-06-04 10:09:08] 2025-06-04 14:08:48,958 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 10:09:08] 2025-06-04 14:08:48,958 | INFO     | pilot state: finished 
[2025-06-04 10:09:08] 2025-06-04 14:08:48,958 | INFO     | transexitcode: 0
[2025-06-04 10:09:08] 2025-06-04 14:08:48,958 | INFO     | exeerrorcode: 0
[2025-06-04 10:09:08] 2025-06-04 14:08:48,958 | INFO     | exeerrordiag: 
[2025-06-04 10:09:08] 2025-06-04 14:08:48,958 | INFO     | exitcode: 0
[2025-06-04 10:09:08] 2025-06-04 14:08:48,958 | INFO     | exitmsg: OK
[2025-06-04 10:09:08] 2025-06-04 14:08:48,958 | INFO     | cpuconsumptiontime: 27917 s
[2025-06-04 10:09:08] 2025-06-04 14:08:48,958 | INFO     | nevents: 400
[2025-06-04 10:09:08] 2025-06-04 14:08:48,958 | INFO     | neventsw: 0
[2025-06-04 10:09:08] 2025-06-04 14:08:48,958 | INFO     | pid: 89920
[2025-06-04 10:09:08] 2025-06-04 14:08:48,958 | INFO     | pgrp: 89920
[2025-06-04 10:09:08] 2025-06-04 14:08:48,959 | INFO     | corecount: 8
[2025-06-04 10:09:08] 2025-06-04 14:08:48,959 | INFO     | event service: False
[2025-06-04 10:09:08] 2025-06-04 14:08:48,959 | INFO     | sizes: {0: 2397341, 1: 2397341, 7: 2397575, 11: 2397603, 4168: 2423348, 4169: 2432289, 4170: 2432473, 4176: 2432643}
[2025-06-04 10:09:08] 2025-06-04 14:08:48,959 | INFO     | --------------------------------------------------
[2025-06-04 10:09:08] 2025-06-04 14:08:48,959 | INFO     | 
[2025-06-04 10:09:08] 2025-06-04 14:08:48,959 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-06-04 10:09:08] 2025-06-04 14:08:49,032 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 10:09:08] 2025-06-04 14:08:49,032 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 10:09:08] 2025-06-04 14:08:49,032 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 10:09:08] 2025-06-04 14:08:49,032 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 10:09:08] 2025-06-04 14:08:49,032 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 10:09:08] 2025-06-04 14:08:49,032 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 10:09:08] 2025-06-04 14:08:49,032 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 10:09:08] 2025-06-04 14:08:49,033 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 10:09:08] 2025-06-04 14:08:49,033 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 10:09:08] 2025-06-04 14:08:49,033 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 10:09:08] 2025-06-04 14:08:49,033 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 10:09:08] 2025-06-04 14:08:49,033 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 10:09:08] 2025-06-04 14:08:49,033 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 10:09:08] 2025-06-04 14:08:49,033 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 10:09:08] 2025-06-04 14:08:49,033 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 10:09:08] 2025-06-04 14:08:49,033 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 10:09:08] 2025-06-04 14:08:49,033 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 10:09:08] 2025-06-04 14:08:49,033 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 10:09:08] 2025-06-04 14:08:49,033 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 10:09:08] 2025-06-04 14:08:49,033 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 10:09:08] 2025-06-04 14:08:49,033 | INFO     | job 6678364357 has completed (purged errors)
[2025-06-04 10:09:08] 2025-06-04 14:08:49,033 | INFO     | overall cleanup function is called
[2025-06-04 10:09:08] 2025-06-04 14:08:50,041 | INFO     | --- collectZombieJob: --- 10, [89920]
[2025-06-04 10:09:08] 2025-06-04 14:08:50,041 | INFO     | zombie collector waiting for pid 89920
[2025-06-04 10:09:08] 2025-06-04 14:08:50,041 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 10:09:08] 2025-06-04 14:08:50,041 | INFO     | collected zombie processes
[2025-06-04 10:09:08] 2025-06-04 14:08:50,041 | INFO     | will attempt to kill all subprocesses of pid=89920
[2025-06-04 10:09:08] 2025-06-04 14:08:50,358 | INFO     | process IDs to be killed: [89920] (in reverse order)
[2025-06-04 10:09:08] 2025-06-04 14:08:50,460 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 10:09:08] 2025-06-04 14:08:50,460 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 10:09:08] 2025-06-04 14:08:50,470 | INFO     | did not find any defunct processes belonging to 89920
[2025-06-04 10:09:08] 2025-06-04 14:08:50,480 | INFO     | did not find any defunct processes belonging to 89920
[2025-06-04 10:09:08] 2025-06-04 14:08:50,480 | INFO     | ready for new job
[2025-06-04 10:09:08] 2025-06-04 14:08:50,480 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 10:09:08] 2025-06-04 14:08:50,482 | INFO     | **************************************
[2025-06-04 10:09:08] 2025-06-04 14:08:50,482 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 10:09:08] 2025-06-04 14:08:50,482 | INFO     | **************************************
[2025-06-04 10:09:08] 2025-06-04 14:08:50,482 | INFO     | 
[2025-06-04 10:09:08] 2025-06-04 14:08:50,486 | INFO     | architecture information:
[2025-06-04 10:09:08] 2025-06-04 14:08:50,487 | INFO     | executing command: cat /etc/os-release
[2025-06-04 10:09:08] 2025-06-04 14:08:50,508 | INFO     | cat /etc/os-release:
[2025-06-04 10:09:08] NAME="CentOS Linux"
[2025-06-04 10:09:08] VERSION="7 (Core)"
[2025-06-04 10:09:08] ID="centos"
[2025-06-04 10:09:08] ID_LIKE="rhel fedora"
[2025-06-04 10:09:08] VERSION_ID="7"
[2025-06-04 10:09:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 10:09:08] ANSI_COLOR="0;31"
[2025-06-04 10:09:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 10:09:08] HOME_URL="https://www.centos.org/"
[2025-06-04 10:09:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 10:09:08] 
[2025-06-04 10:09:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 10:09:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 10:09:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 10:09:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 10:09:08] 
[2025-06-04 10:09:08] 2025-06-04 14:08:50,508 | INFO     | **************************************
[2025-06-04 10:09:08] 2025-06-04 14:08:51,011 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-06-04 10:09:08] 2025-06-04 14:08:51,027 | INFO     | sufficient remaining disk space (104034467840 B)
[2025-06-04 10:09:08] 2025-06-04 14:08:51,027 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 10:09:08] 2025-06-04 14:08:51,027 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 10:09:08] 2025-06-04 14:08:51,027 | INFO     | update_server=False
[2025-06-04 10:09:08] 2025-06-04 14:08:51,027 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 10:09:08] 2025-06-04 14:08:51,027 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 10:09:08] 2025-06-04 14:08:51,028 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 10:09:08] 2025-06-04 14:08:51,028 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 10:09:08] 2025-06-04 14:08:51,028 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 10:09:08] 2025-06-04 14:08:51,700 | INFO     | all data control threads have been joined
[2025-06-04 10:09:08] 2025-06-04 14:08:52,003 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:09:08] 2025-06-04 14:08:52,003 | INFO     | aborting loop
[2025-06-04 10:09:08] 2025-06-04 14:08:52,032 | INFO     | [job] retrieve thread has finished
[2025-06-04 10:09:08] 2025-06-04 14:08:52,035 | INFO     | [payload] failed_post thread has finished
[2025-06-04 10:09:08] 2025-06-04 14:08:52,325 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 10:09:08] 2025-06-04 14:08:52,360 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 10:09:08] 2025-06-04 14:08:52,376 | INFO     | all payload control threads have been joined
[2025-06-04 10:09:08] 2025-06-04 14:08:52,472 | INFO     | all job control threads have been joined
[2025-06-04 10:09:08] 2025-06-04 14:08:52,589 | INFO     | [job] validate thread has finished
[2025-06-04 10:09:08] 2025-06-04 14:08:52,706 | INFO     | [data] control thread has finished
[2025-06-04 10:09:08] 2025-06-04 14:08:52,842 | INFO     | [data] copytool_in thread has finished
[2025-06-04 10:09:08] 2025-06-04 14:08:53,009 | INFO     | [job] job monitor thread has finished
[2025-06-04 10:09:08] 2025-06-04 14:08:53,133 | INFO     | [payload] validate_post thread has finished
[2025-06-04 10:09:08] 2025-06-04 14:08:53,207 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 10:09:08] 2025-06-04 14:08:53,260 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 10:09:08] 2025-06-04 14:08:53,381 | INFO     | [payload] control thread has finished
[2025-06-04 10:09:08] 2025-06-04 14:08:53,412 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 10:09:08] 2025-06-04 14:08:53,478 | INFO     | [job] control thread has finished
[2025-06-04 10:09:08] 2025-06-04 14:08:53,971 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:09:08] 2025-06-04 14:08:54,366 | INFO     | [data] copytool_out thread has finished
[2025-06-04 10:09:08] 2025-06-04 14:08:54,977 | INFO     | [job] queue monitor thread has finished
[2025-06-04 10:09:08] 2025-06-04 14:08:57,420 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 10:09:08] 2025-06-04 14:09:01,641 | INFO     | job.realtimelogging is not enabled
[2025-06-04 10:09:08] 2025-06-04 14:09:02,647 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 10:09:08] 2025-06-04 14:09:02,906 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139839914248000)>', '<ExcThread(monitor, started 139839471073024)>']
[2025-06-04 10:09:08] 2025-06-04 14:09:03,081 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 10:09:08] 2025-06-04 14:09:03,081 | INFO     | [monitor] control thread has ended
[2025-06-04 10:09:08] 2025-06-04 14:09:07,932 | INFO     | all workflow threads have been joined
[2025-06-04 10:09:08] 2025-06-04 14:09:07,932 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 10:09:08] 2025-06-04 14:09:07,932 | INFO     | traces error code: 0
[2025-06-04 10:09:08] 2025-06-04 14:09:07,932 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 10:09:08] 2025-06-04 14:09:08,046 [wrapper] ==== pilot stdout END ====
[2025-06-04 10:09:08] 2025-06-04 14:09:08,049 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 10:09:08] 2025-06-04 14:09:08,054 [wrapper] pilotpid: 78230
[2025-06-04 10:09:08] 2025-06-04 14:09:08,056 [wrapper] Pilot exit status: 0
[2025-06-04 10:09:08] 2025-06-04 14:09:08,065 [wrapper] pandaids: 6678364357
[2025-06-04 10:09:08] 2025-06-04 14:09:08,118 [wrapper] cleanup supervisor_pilot 24550 78231
[2025-06-04 10:09:08] 2025-06-04 14:09:08,121 [wrapper] Test setup, not cleaning
[2025-06-04 10:09:08] 2025-06-04 14:09:08,124 [wrapper] apfmon messages muted
[2025-06-04 10:09:08] 2025-06-04 14:09:08,125 [wrapper] ==== wrapper stdout END ====
[2025-06-04 10:09:08] 2025-06-04 14:09:08,127 [wrapper] ==== wrapper stderr END ====
[2025-06-04 10:09:08]  *** Error codes and diagnostics ***
[2025-06-04 10:09:08]     "exeErrorCode": 0,
[2025-06-04 10:09:08]     "exeErrorDiag": "",
[2025-06-04 10:09:08]     "pilotErrorCode": 0,
[2025-06-04 10:09:08]     "pilotErrorDiag": "",
[2025-06-04 10:09:08]  *** Listing of results directory ***
[2025-06-04 10:09:08] total 383976
[2025-06-04 10:09:08] -rw-r--r-- 1 boincer umatlas    495897 Jun  4 01:59 pilot3.tar.gz
[2025-06-04 10:09:08] -rwx------ 1 boincer umatlas     37140 Jun  4 02:16 runpilot2-wrapper.sh
[2025-06-04 10:09:08] -rw-r--r-- 1 boincer umatlas      5111 Jun  4 02:16 queuedata.json
[2025-06-04 10:09:08] -rw-r--r-- 1 boincer umatlas       100 Jun  4 08:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 10:09:08] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 08:58 run_atlas
[2025-06-04 10:09:08] -rw-r--r-- 1 boincer umatlas       105 Jun  4 08:58 job.xml
[2025-06-04 10:09:08] -rw-r--r-- 2 boincer umatlas 213753487 Jun  4 08:58 EVNT.45006593._002155.pool.root.1
[2025-06-04 10:09:08] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 08:58 start_atlas.sh
[2025-06-04 10:09:08] drwxrwx--x 2 boincer umatlas      4096 Jun  4 08:58 shared
[2025-06-04 10:09:08] -rw-r--r-- 2 boincer umatlas    508879 Jun  4 08:58 input.tar.gz
[2025-06-04 10:09:08] -rw-r--r-- 1 boincer umatlas         0 Jun  4 08:58 boinc_lockfile
[2025-06-04 10:09:08] -rw-r--r-- 1 boincer umatlas      2524 Jun  4 08:58 pandaJob.out
[2025-06-04 10:09:08] -rw------- 1 boincer umatlas    986811 Jun  4 08:58 agis_schedconf.cvmfs.json
[2025-06-04 10:09:08] -rw------- 1 boincer umatlas   1598969 Jun  4 08:58 agis_ddmendpoints.agis.ALL.json
[2025-06-04 10:09:08] drwx------ 4 boincer umatlas      4096 Jun  4 08:58 pilot3
[2025-06-04 10:09:08] -rw-r--r-- 1 boincer umatlas      6387 Jun  4 10:04 init_data.xml
[2025-06-04 10:09:08] -rw------- 1 boincer umatlas        95 Jun  4 10:08 pilot_heartbeat.json
[2025-06-04 10:09:08] -rw------- 1 boincer umatlas 174153213 Jun  4 10:08 HITS.45006595._053857.pool.root.1
[2025-06-04 10:09:08] -rw-r--r-- 1 boincer umatlas       529 Jun  4 10:08 boinc_task_state.xml
[2025-06-04 10:09:08] -rw------- 1 boincer umatlas      1069 Jun  4 10:08 memory_monitor_summary.json
[2025-06-04 10:09:08] -rw------- 1 boincer umatlas    315045 Jun  4 10:08 log.45006595._053857.job.log.tgz.1
[2025-06-04 10:09:08] -rw------- 1 boincer umatlas      7735 Jun  4 10:08 heartbeat.json
[2025-06-04 10:09:08] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 10:08 boinc_mmap_file
[2025-06-04 10:09:08] -rw-r--r-- 1 boincer umatlas        27 Jun  4 10:08 wrapper_checkpoint.txt
[2025-06-04 10:09:08] -rw------- 1 boincer umatlas      4549 Jun  4 10:09 pilotlog.txt
[2025-06-04 10:09:08] -rw------- 1 boincer umatlas    417031 Jun  4 10:09 log.45006595._053857.job.log.1
[2025-06-04 10:09:08] -rw------- 1 boincer umatlas       357 Jun  4 10:09 output.list
[2025-06-04 10:09:08] -rw-r--r-- 1 boincer umatlas       620 Jun  4 10:09 runtime_log
[2025-06-04 10:09:08] -rw------- 1 boincer umatlas    747520 Jun  4 10:09 result.tar.gz
[2025-06-04 10:09:08] -rw-r--r-- 1 boincer umatlas      8659 Jun  4 10:09 runtime_log.err
[2025-06-04 10:09:08] -rw------- 1 boincer umatlas       656 Jun  4 10:09 J6PKDmvbwg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmqRnKDmjlUg5m.diag
[2025-06-04 10:09:08] -rw-r--r-- 1 boincer umatlas     21644 Jun  4 10:09 stderr.txt
[2025-06-04 10:09:08] HITS file was successfully produced:
[2025-06-04 10:09:08] -rw------- 1 boincer umatlas 174153213 Jun  4 10:08 shared/HITS.pool.root.1
[2025-06-04 10:09:08]  *** Contents of shared directory: ***
[2025-06-04 10:09:08] total 380068
[2025-06-04 10:09:08] -rw-r--r-- 2 boincer umatlas 213753487 Jun  4 08:58 ATLAS.root_0
[2025-06-04 10:09:08] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 08:58 start_atlas.sh
[2025-06-04 10:09:08] -rw-r--r-- 2 boincer umatlas    508879 Jun  4 08:58 input.tar.gz
[2025-06-04 10:09:08] -rw------- 1 boincer umatlas 174153213 Jun  4 10:08 HITS.pool.root.1
[2025-06-04 10:09:08] -rw------- 1 boincer umatlas    747520 Jun  4 10:09 result.tar.gz
10:09:09 (68862): run_atlas exited; CPU time 27793.734195
10:09:09 (68862): called boinc_finish(0)

</stderr_txt>
]]>

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