Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:54:04 (17575): wrapper (7.7.26015): starting
22:54:04 (17575): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 22:54:04] Arguments: --nthreads 8
[2025-06-04 22:54:04] Threads: 8
[2025-06-04 22:54:04] Checking for CVMFS
[2025-06-04 22:54:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 22:54:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 22:54:05] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 22:54:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 22:54:06] 2.11.2.0 31576 33714 99008 146793 3 200 20734959 25165824 3972 130560 0 17448275 99.829 19043312 2067 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 22:54:06] CVMFS is ok
[2025-06-04 22:54:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 22:54:07] Checking for apptainer binary...
[2025-06-04 22:54:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 22:54:07] Running /usr/bin/apptainer --version
[2025-06-04 22:54:07] apptainer version 1.3.2-1.el7
[2025-06-04 22:54:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 22:54:19] cg-vwn347.simple-grid.lan
[2025-06-04 22:54:19] apptainer works
[2025-06-04 22:54:19] Set ATHENA_PROC_NUMBER=8
[2025-06-04 22:54:19] Set ATHENA_CORE_NUMBER=8
[2025-06-04 22:54:19] Starting ATLAS job with PandaID=6679150586
[2025-06-04 22:54:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 03:02:50]  *** The last 200 lines of the pilot log: ***
[2025-06-05 03:02:50] 2025-06-05 00:43:42,357 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6679150586/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 03:02:50] 2025-06-05 00:43:42,358 | INFO     | extracted standard info from prmon json
[2025-06-05 03:02:50] 2025-06-05 00:43:42,358 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 03:02:50] 2025-06-05 00:43:42,359 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 03:02:50] 2025-06-05 00:43:42,359 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 03:02:50] 2025-06-05 00:43:42,359 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 03:02:50] 2025-06-05 00:43:42,365 | INFO     | fitting pss+swap vs Time
[2025-06-05 03:02:50] 2025-06-05 00:43:42,365 | INFO     | sum of square deviations: 3485088600.0
[2025-06-05 03:02:50] 2025-06-05 00:43:42,367 | INFO     | sum of deviations: 14391828637.00001
[2025-06-05 03:02:50] 2025-06-05 00:43:42,367 | INFO     | mean x: 1749077339.5
[2025-06-05 03:02:50] 2025-06-05 00:43:42,367 | INFO     | mean y: 2475981.6160714286
[2025-06-05 03:02:50] 2025-06-05 00:43:42,367 | INFO     | -- intersect: -7220416814.550972
[2025-06-05 03:02:50] 2025-06-05 00:43:42,367 | INFO     | intersect: -7220416814.550972
[2025-06-05 03:02:50] 2025-06-05 00:43:42,368 | INFO     | chi2: 2.496358485574957
[2025-06-05 03:02:50] 2025-06-05 00:43:42,368 | INFO     | sum of square deviations: 3256879670.0
[2025-06-05 03:02:50] 2025-06-05 00:43:42,370 | INFO     | sum of deviations: 28763920602.000008
[2025-06-05 03:02:50] 2025-06-05 00:43:42,370 | INFO     | mean x: 1749077187.0
[2025-06-05 03:02:50] 2025-06-05 00:43:42,370 | INFO     | mean y: 2485406.397260274
[2025-06-05 03:02:50] 2025-06-05 00:43:42,371 | INFO     | -- intersect: -15444912849.380953
[2025-06-05 03:02:50] 2025-06-05 00:43:42,371 | INFO     | intersect: -15444912849.380953
[2025-06-05 03:02:50] 2025-06-05 00:43:42,371 | INFO     | chi2: 1.7261828640113046
[2025-06-05 03:02:50] 2025-06-05 00:43:42,371 | INFO     | current chi2=1.7261828640113046 (change=30.851964011341376 %)
[2025-06-05 03:02:50] 2025-06-05 00:43:42,372 | INFO     | sum of square deviations: 3038856977.5
[2025-06-05 03:02:50] 2025-06-05 00:43:42,381 | INFO     | sum of deviations: 28050425074.0
[2025-06-05 03:02:50] 2025-06-05 00:43:42,381 | INFO     | mean x: 1749077034.5
[2025-06-05 03:02:50] 2025-06-05 00:43:42,381 | INFO     | mean y: 2484907.2990654204
[2025-06-05 03:02:50] 2025-06-05 00:43:42,381 | INFO     | -- intersect: -16142517857.937645
[2025-06-05 03:02:50] 2025-06-05 00:43:42,381 | INFO     | intersect: -16142517857.937645
[2025-06-05 03:02:50] 2025-06-05 00:43:42,382 | INFO     | chi2: 1.727332228742016
[2025-06-05 03:02:50] 2025-06-05 00:43:42,382 | INFO     | current chi2=1.727332228742016 (change=-0.06658418147197818 %)
[2025-06-05 03:02:50] 2025-06-05 00:43:42,382 | INFO     | right removable region: 213
[2025-06-05 03:02:50] 2025-06-05 00:43:42,383 | INFO     | sum of square deviations: 3256879670.0
[2025-06-05 03:02:50] 2025-06-05 00:43:42,385 | INFO     | sum of deviations: -24444541285.0
[2025-06-05 03:02:50] 2025-06-05 00:43:42,385 | INFO     | mean x: 1749077492.0
[2025-06-05 03:02:50] 2025-06-05 00:43:42,385 | INFO     | mean y: 2501715.1735159815
[2025-06-05 03:02:50] 2025-06-05 00:43:42,385 | INFO     | -- intersect: 13130219437.65795
[2025-06-05 03:02:50] 2025-06-05 00:43:42,385 | INFO     | intersect: 13130219437.65795
[2025-06-05 03:02:50] 2025-06-05 00:43:42,385 | INFO     | chi2: 0.8850561520636975
[2025-06-05 03:02:50] 2025-06-05 00:43:42,386 | INFO     | current chi2=0.8850561520636975 (change=64.54611157900854 %)
[2025-06-05 03:02:50] 2025-06-05 00:43:42,386 | INFO     | sum of square deviations: 3038856977.5
[2025-06-05 03:02:50] 2025-06-05 00:43:42,388 | INFO     | sum of deviations: -21662338604.999985
[2025-06-05 03:02:50] 2025-06-05 00:43:42,388 | INFO     | mean x: 1749077644.5
[2025-06-05 03:02:50] 2025-06-05 00:43:42,388 | INFO     | mean y: 2499730.7943925234
[2025-06-05 03:02:50] 2025-06-05 00:43:42,388 | INFO     | -- intersect: 12470711450.572437
[2025-06-05 03:02:50] 2025-06-05 00:43:42,389 | INFO     | intersect: 12470711450.572437
[2025-06-05 03:02:50] 2025-06-05 00:43:42,389 | INFO     | chi2: 0.8676452274771856
[2025-06-05 03:02:50] 2025-06-05 00:43:42,389 | INFO     | current chi2=0.8676452274771856 (change=1.9672112945505822 %)
[2025-06-05 03:02:50] 2025-06-05 00:43:42,389 | INFO     | left removable region: 20
[2025-06-05 03:02:50] 2025-06-05 00:43:42,390 | INFO     | sum of square deviations: 2229146912.0
[2025-06-05 03:02:50] 2025-06-05 00:43:42,391 | INFO     | sum of deviations: 4350190661.0
[2025-06-05 03:02:50] 2025-06-05 00:43:42,391 | INFO     | mean x: 1749077614.0
[2025-06-05 03:02:50] 2025-06-05 00:43:42,391 | INFO     | mean y: 2500868.7720207255
[2025-06-05 03:02:50] 2025-06-05 00:43:42,391 | INFO     | -- intersect: -3410832304.0336676
[2025-06-05 03:02:50] 2025-06-05 00:43:42,391 | INFO     | intersect: -3410832304.0336676
[2025-06-05 03:02:50] 2025-06-05 00:43:42,392 | INFO     | chi2: 0.001633567756811662
[2025-06-05 03:02:50] 2025-06-05 00:43:42,392 | INFO     | -- intersect: -3410832304.0336676
[2025-06-05 03:02:50] 2025-06-05 00:43:42,392 | INFO     | current memory leak: 1.95 B/s (using 193 data points, chi2=0.00)
[2025-06-05 03:02:50] 2025-06-05 00:43:42,393 | INFO     | ..............................
[2025-06-05 03:02:50] 2025-06-05 00:43:42,393 | INFO     | . Timing measurements:
[2025-06-05 03:02:50] 2025-06-05 00:43:42,393 | INFO     | . get job = 0 s
[2025-06-05 03:02:50] 2025-06-05 00:43:42,393 | INFO     | . initial setup = 2 s
[2025-06-05 03:02:50] 2025-06-05 00:43:42,393 | INFO     | . payload setup = 14 s
[2025-06-05 03:02:50] 2025-06-05 00:43:42,393 | INFO     | . stage-in = 0 s
[2025-06-05 03:02:50] 2025-06-05 00:43:42,393 | INFO     | . payload execution = 13641 s
[2025-06-05 03:02:50] 2025-06-05 00:43:42,399 | INFO     | . stage-out = 2 s
[2025-06-05 03:02:50] 2025-06-05 00:43:42,399 | INFO     | . log creation = 0 s
[2025-06-05 03:02:50] 2025-06-05 00:43:42,399 | INFO     | ..............................
[2025-06-05 03:02:50] 2025-06-05 00:43:42,546 | INFO     | 
[2025-06-05 03:02:50] 2025-06-05 00:43:42,547 | INFO     | job summary report
[2025-06-05 03:02:50] 2025-06-05 00:43:42,547 | INFO     | --------------------------------------------------
[2025-06-05 03:02:50] 2025-06-05 00:43:42,547 | INFO     | PanDA job id: 6679150586
[2025-06-05 03:02:50] 2025-06-05 00:43:42,547 | INFO     | task id: 45006595
[2025-06-05 03:02:50] 2025-06-05 00:43:42,547 | INFO     | errors: (none)
[2025-06-05 03:02:50] 2025-06-05 00:43:42,547 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 03:02:50] 2025-06-05 00:43:42,547 | INFO     | pilot state: finished 
[2025-06-05 03:02:50] 2025-06-05 00:43:42,547 | INFO     | transexitcode: 0
[2025-06-05 03:02:50] 2025-06-05 00:43:42,547 | INFO     | exeerrorcode: 0
[2025-06-05 03:02:50] 2025-06-05 00:43:42,548 | INFO     | exeerrordiag: 
[2025-06-05 03:02:50] 2025-06-05 00:43:42,548 | INFO     | exitcode: 0
[2025-06-05 03:02:50] 2025-06-05 00:43:42,548 | INFO     | exitmsg: OK
[2025-06-05 03:02:50] 2025-06-05 00:43:42,548 | INFO     | cpuconsumptiontime: 50008 s
[2025-06-05 03:02:50] 2025-06-05 00:43:42,548 | INFO     | nevents: 400
[2025-06-05 03:02:50] 2025-06-05 00:43:42,548 | INFO     | neventsw: 0
[2025-06-05 03:02:50] 2025-06-05 00:43:42,548 | INFO     | pid: 29761
[2025-06-05 03:02:50] 2025-06-05 00:43:42,548 | INFO     | pgrp: 29761
[2025-06-05 03:02:50] 2025-06-05 00:43:42,548 | INFO     | corecount: 8
[2025-06-05 03:02:50] 2025-06-05 00:43:42,548 | INFO     | event service: False
[2025-06-05 03:02:50] 2025-06-05 00:43:42,548 | INFO     | sizes: {0: 2397122, 1: 2397321, 2: 2397321, 12: 2397583, 13660: 2427175, 13663: 2436118, 13664: 2436302, 13721: 2436472}
[2025-06-05 03:02:50] 2025-06-05 00:43:42,548 | INFO     | --------------------------------------------------
[2025-06-05 03:02:50] 2025-06-05 00:43:42,549 | INFO     | 
[2025-06-05 03:02:50] 2025-06-05 00:43:42,549 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-06-05 03:02:50] 2025-06-05 00:43:43,005 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 03:02:50] 2025-06-05 00:43:43,005 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 03:02:50] 2025-06-05 00:43:43,005 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 03:02:50] 2025-06-05 00:43:43,006 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 03:02:50] 2025-06-05 00:43:43,006 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 03:02:50] 2025-06-05 00:43:43,006 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 03:02:50] 2025-06-05 00:43:43,006 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 03:02:50] 2025-06-05 00:43:43,006 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 03:02:50] 2025-06-05 00:43:43,006 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 03:02:50] 2025-06-05 00:43:43,006 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 03:02:50] 2025-06-05 00:43:43,006 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 03:02:50] 2025-06-05 00:43:43,006 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 03:02:50] 2025-06-05 00:43:43,006 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 03:02:50] 2025-06-05 00:43:43,006 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 03:02:50] 2025-06-05 00:43:43,007 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 03:02:50] 2025-06-05 00:43:43,007 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 03:02:50] 2025-06-05 00:43:43,007 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 03:02:50] 2025-06-05 00:43:43,007 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 03:02:50] 2025-06-05 00:43:43,007 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 03:02:50] 2025-06-05 00:43:43,007 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 03:02:50] 2025-06-05 00:43:43,007 | INFO     | job 6679150586 has completed (purged errors)
[2025-06-05 03:02:50] 2025-06-05 00:43:43,007 | INFO     | overall cleanup function is called
[2025-06-05 03:02:50] 2025-06-05 00:43:44,016 | INFO     | --- collectZombieJob: --- 10, [29761]
[2025-06-05 03:02:50] 2025-06-05 00:43:44,017 | INFO     | zombie collector waiting for pid 29761
[2025-06-05 03:02:50] 2025-06-05 00:43:44,017 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 03:02:50] 2025-06-05 00:43:44,017 | INFO     | collected zombie processes
[2025-06-05 03:02:50] 2025-06-05 00:43:44,017 | INFO     | will attempt to kill all subprocesses of pid=29761
[2025-06-05 03:02:50] 2025-06-05 00:43:44,138 | INFO     | process IDs to be killed: [29761] (in reverse order)
[2025-06-05 03:02:50] 2025-06-05 00:43:44,399 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 03:02:50] 2025-06-05 00:43:44,400 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 03:02:50] 2025-06-05 00:43:44,403 | INFO     | did not find any defunct processes belonging to 29761
[2025-06-05 03:02:50] 2025-06-05 00:43:44,406 | INFO     | did not find any defunct processes belonging to 29761
[2025-06-05 03:02:50] 2025-06-05 00:43:44,406 | INFO     | ready for new job
[2025-06-05 03:02:50] 2025-06-05 00:43:44,406 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 03:02:50] 2025-06-05 00:43:44,408 | INFO     | **************************************
[2025-06-05 03:02:50] 2025-06-05 00:43:44,408 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 03:02:50] 2025-06-05 00:43:44,409 | INFO     | **************************************
[2025-06-05 03:02:50] 2025-06-05 00:43:44,409 | INFO     | 
[2025-06-05 03:02:50] 2025-06-05 00:43:44,409 | INFO     | pilot is running in a VM
[2025-06-05 03:02:50] 2025-06-05 00:43:44,410 | INFO     | architecture information:
[2025-06-05 03:02:50] 2025-06-05 00:43:44,418 | INFO     | executing command: cat /etc/os-release
[2025-06-05 03:02:50] 2025-06-05 00:43:44,638 | INFO     | cat /etc/os-release:
[2025-06-05 03:02:50] NAME="CentOS Linux"
[2025-06-05 03:02:50] VERSION="7 (Core)"
[2025-06-05 03:02:50] ID="centos"
[2025-06-05 03:02:50] ID_LIKE="rhel fedora"
[2025-06-05 03:02:50] VERSION_ID="7"
[2025-06-05 03:02:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 03:02:50] ANSI_COLOR="0;31"
[2025-06-05 03:02:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 03:02:50] HOME_URL="https://www.centos.org/"
[2025-06-05 03:02:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 03:02:50] 
[2025-06-05 03:02:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 03:02:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 03:02:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 03:02:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 03:02:50] 
[2025-06-05 03:02:50] 2025-06-05 00:43:44,638 | INFO     | **************************************
[2025-06-05 03:02:50] 2025-06-05 00:43:45,142 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-06-05 03:02:50] 2025-06-05 00:43:45,374 | INFO     | sufficient remaining disk space (497151901696 B)
[2025-06-05 03:02:50] 2025-06-05 00:43:45,375 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 03:02:50] 2025-06-05 00:43:45,375 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 03:02:50] 2025-06-05 00:43:45,375 | INFO     | update_server=False
[2025-06-05 03:02:50] 2025-06-05 00:43:45,375 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 03:02:50] 2025-06-05 00:43:45,375 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 03:02:50] 2025-06-05 00:43:45,507 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 03:02:50] 2025-06-05 00:43:45,507 | INFO     | aborting loop
[2025-06-05 03:02:50] 2025-06-05 00:43:45,518 | INFO     | all payload control threads have been joined
[2025-06-05 03:02:50] 2025-06-05 00:43:45,855 | INFO     | all data control threads have been joined
[2025-06-05 03:02:50] 2025-06-05 00:43:46,276 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 03:02:50] 2025-06-05 00:43:46,276 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 03:02:50] 2025-06-05 00:43:46,276 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 03:02:50] 2025-06-05 00:43:46,381 | INFO     | [job] retrieve thread has finished
[2025-06-05 03:02:50] 2025-06-05 00:43:46,473 | INFO     | [job] validate thread has finished
[2025-06-05 03:02:50] 2025-06-05 00:43:46,513 | INFO     | [job] job monitor thread has finished
[2025-06-05 03:02:50] 2025-06-05 00:43:46,525 | INFO     | [payload] control thread has finished
[2025-06-05 03:02:50] 2025-06-05 00:43:46,646 | INFO     | [payload] failed_post thread has finished
[2025-06-05 03:02:50] 2025-06-05 00:43:46,654 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 03:02:50] 2025-06-05 00:43:46,662 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 03:02:50] 2025-06-05 00:43:46,862 | INFO     | [data] control thread has finished
[2025-06-05 03:02:50] 2025-06-05 00:43:46,875 | INFO     | all job control threads have been joined
[2025-06-05 03:02:50] 2025-06-05 00:43:47,029 | INFO     | [data] copytool_in thread has finished
[2025-06-05 03:02:50] 2025-06-05 00:43:47,383 | INFO     | [data] copytool_out thread has finished
[2025-06-05 03:02:50] 2025-06-05 00:43:47,439 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 03:02:50] 2025-06-05 00:43:47,560 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 03:02:50] 2025-06-05 00:43:47,570 | INFO     | [payload] validate_post thread has finished
[2025-06-05 03:02:50] 2025-06-05 00:43:47,629 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 03:02:50] 2025-06-05 00:43:47,684 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 03:02:50] 2025-06-05 00:43:47,882 | INFO     | [job] control thread has finished
[2025-06-05 03:02:50] 2025-06-05 00:43:48,567 | INFO     | [job] queue monitor thread has finished
[2025-06-05 03:02:50] 2025-06-05 00:43:50,664 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 03:02:50] 2025-06-05 00:43:52,670 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140569723320128)>', '<ExcThread(monitor, started 140569279969024)>']
[2025-06-05 03:02:50] 2025-06-05 00:43:53,317 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 03:02:50] 2025-06-05 00:43:53,318 | INFO     | [monitor] control thread has ended
[2025-06-05 03:02:50] 2025-06-05 00:43:57,695 | INFO     | all workflow threads have been joined
[2025-06-05 03:02:50] 2025-06-05 00:43:57,696 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 03:02:50] 2025-06-05 00:43:57,696 | INFO     | traces error code: 0
[2025-06-05 03:02:50] 2025-06-05 00:43:57,696 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 03:02:50] 2025-06-05 00:43:57,940 [wrapper] ==== pilot stdout END ====
[2025-06-05 03:02:50] 2025-06-05 00:43:58,008 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 03:02:50] 2025-06-05 00:43:58,108 [wrapper] pilotpid: 21234
[2025-06-05 03:02:50] 2025-06-05 00:43:58,209 [wrapper] Pilot exit status: 0
[2025-06-05 03:02:50] 2025-06-05 00:43:58,710 [wrapper] pandaids: 6679150586
[2025-06-05 03:02:50] 2025-06-05 00:43:59,507 [wrapper] cleanup supervisor_pilot 23878 21235
[2025-06-05 03:02:50] 2025-06-05 00:43:59,646 [wrapper] Test setup, not cleaning
[2025-06-05 03:02:50] 2025-06-05 00:43:59,757 [wrapper] apfmon messages muted
[2025-06-05 03:02:50] 2025-06-05 00:43:59,828 [wrapper] ==== wrapper stdout END ====
[2025-06-05 03:02:50] 2025-06-05 00:43:59,930 [wrapper] ==== wrapper stderr END ====
[2025-06-05 03:02:50]  *** Error codes and diagnostics ***
[2025-06-05 03:02:50]     "exeErrorCode": 0,
[2025-06-05 03:02:50]     "exeErrorDiag": "",
[2025-06-05 03:02:50]     "pilotErrorCode": 0,
[2025-06-05 03:02:50]     "pilotErrorDiag": "",
[2025-06-05 03:02:50]  *** Listing of results directory ***
[2025-06-05 03:02:50] total 385860
[2025-06-05 03:02:50] -rw-r--r--. 1 boinc boinc    495897 Jun  4 10:46 pilot3.tar.gz
[2025-06-05 03:02:50] -rwx------. 1 boinc boinc     37140 Jun  4 10:51 runpilot2-wrapper.sh
[2025-06-05 03:02:50] -rw-r--r--. 1 boinc boinc      5111 Jun  4 10:51 queuedata.json
[2025-06-05 03:02:50] -rw-r--r--. 1 boinc boinc       100 Jun  4 22:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 03:02:50] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 22:54 run_atlas
[2025-06-05 03:02:50] -rw-r--r--. 1 boinc boinc       105 Jun  4 22:54 job.xml
[2025-06-05 03:02:50] -rw-r--r--. 2 boinc boinc 212770745 Jun  4 22:54 EVNT.45006593._001397.pool.root.1
[2025-06-05 03:02:50] -rw-r--r--. 1 boinc boinc      6392 Jun  4 22:54 init_data.xml
[2025-06-05 03:02:50] drwxrwx--x. 2 boinc boinc        68 Jun  4 22:54 shared
[2025-06-05 03:02:50] -rw-r--r--. 2 boinc boinc    508875 Jun  4 22:54 input.tar.gz
[2025-06-05 03:02:50] -rw-r--r--. 2 boinc boinc     15093 Jun  4 22:54 start_atlas.sh
[2025-06-05 03:02:50] -rw-r--r--. 1 boinc boinc         0 Jun  4 22:54 boinc_lockfile
[2025-06-05 03:02:50] -rw-r--r--. 1 boinc boinc      2525 Jun  4 22:54 pandaJob.out
[2025-06-05 03:02:50] -rw-------. 1 boinc boinc    987032 Jun  4 22:54 agis_schedconf.cvmfs.json
[2025-06-05 03:02:50] drwx------. 4 boinc boinc      4096 Jun  4 22:54 pilot3
[2025-06-05 03:02:50] -rw-------. 1 boinc boinc 175397150 Jun  5 02:41 HITS.45006595._055911.pool.root.1
[2025-06-05 03:02:50] -rw-r--r--. 1 boinc boinc       531 Jun  5 02:42 boinc_task_state.xml
[2025-06-05 03:02:50] -rw-------. 1 boinc boinc      1020 Jun  5 02:42 memory_monitor_summary.json
[2025-06-05 03:02:50] -rw-------. 1 boinc boinc   1598969 Jun  5 02:42 agis_ddmendpoints.agis.ALL.json
[2025-06-05 03:02:50] -rw-------. 1 boinc boinc    372974 Jun  5 02:42 log.45006595._055911.job.log.tgz.1
[2025-06-05 03:02:50] -rw-------. 1 boinc boinc        95 Jun  5 02:42 pilot_heartbeat.json
[2025-06-05 03:02:50] -rw-------. 1 boinc boinc      7688 Jun  5 02:43 heartbeat.json
[2025-06-05 03:02:50] -rw-------. 1 boinc boinc      4417 Jun  5 02:43 pilotlog.txt
[2025-06-05 03:02:50] -rw-------. 1 boinc boinc   1192257 Jun  5 02:43 log.45006595._055911.job.log.1
[2025-06-05 03:02:50] -rw-------. 1 boinc boinc       357 Jun  5 02:44 output.list
[2025-06-05 03:02:50] -rw-r--r--. 1 boinc boinc       620 Jun  5 02:44 runtime_log
[2025-06-05 03:02:50] -rw-------. 1 boinc boinc   1587200 Jun  5 02:44 result.tar.gz
[2025-06-05 03:02:50] -rw-r--r--. 1 boinc boinc      8673 Jun  5 02:44 runtime_log.err
[2025-06-05 03:02:50] -rw-------. 1 boinc boinc       656 Jun  5 02:44 pljLDmT1yg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm7pnKDmJw2kVm.diag
[2025-06-05 03:02:50] -rw-r--r--. 1 boinc boinc      8192 Jun  5 03:02 boinc_mmap_file
[2025-06-05 03:02:50] -rw-r--r--. 1 boinc boinc        28 Jun  5 03:02 wrapper_checkpoint.txt
[2025-06-05 03:02:50] -rw-r--r--. 1 boinc boinc     20498 Jun  5 03:02 stderr.txt
[2025-06-05 03:02:50] HITS file was successfully produced:
[2025-06-05 03:02:50] -rw-------. 1 boinc boinc 175397150 Jun  5 02:41 shared/HITS.pool.root.1
[2025-06-05 03:02:50]  *** Contents of shared directory: ***
[2025-06-05 03:02:50] total 381140
[2025-06-05 03:02:50] -rw-r--r--. 2 boinc boinc 212770745 Jun  4 22:54 ATLAS.root_0
[2025-06-05 03:02:50] -rw-r--r--. 2 boinc boinc    508875 Jun  4 22:54 input.tar.gz
[2025-06-05 03:02:50] -rw-r--r--. 2 boinc boinc     15093 Jun  4 22:54 start_atlas.sh
[2025-06-05 03:02:50] -rw-------. 1 boinc boinc 175397150 Jun  5 02:41 HITS.pool.root.1
[2025-06-05 03:02:50] -rw-------. 1 boinc boinc   1587200 Jun  5 02:44 result.tar.gz
03:02:52 (17575): run_atlas exited; CPU time 50180.249581
03:02:52 (17575): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN