Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:22:03 (3935464): wrapper (7.7.26015): starting
09:22:03 (3935464): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 09:22:03] Arguments: --nthreads 12
[2025-06-04 09:22:03] Threads: 12
[2025-06-04 09:22:03] Checking for CVMFS
[2025-06-04 09:22:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 09:22:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 09:22:03] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 09:22:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 09:22:03] 2.12.6.0 2658689 23325 487940 146781 0 66 24523165 32935937 3757 16776704 1 93860731 99.588 116766038 34455 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 09:22:03] CVMFS is ok
[2025-06-04 09:22:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 09:22:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 09:22:03] Further information can be found at the LHC@home message board.
[2025-06-04 09:22:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 09:22:03] Checking for apptainer binary...
[2025-06-04 09:22:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 09:22:03] Running /usr/bin/apptainer --version
[2025-06-04 09:22:03] apptainer version 1.4.1-1.el9
[2025-06-04 09:22:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 09:22:03] c6-5-7-2.aglt2.org
[2025-06-04 09:22:03] apptainer works
[2025-06-04 09:22:03] Set ATHENA_PROC_NUMBER=12
[2025-06-04 09:22:03] Set ATHENA_CORE_NUMBER=12
[2025-06-04 09:22:03] Starting ATLAS job with PandaID=6679180015
[2025-06-04 09:22:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 09:57:57]  *** The last 200 lines of the pilot log: ***
[2025-06-04 09:57:57]  filesize=351703
[2025-06-04 09:57:57]  filetype=log
[2025-06-04 09:57:57]  guid=7903ec49-38f5-404f-bb6a-24a2a86778d3
[2025-06-04 09:57:57]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 09:57:57]  is_altstaged=None
[2025-06-04 09:57:57]  is_tar=False
[2025-06-04 09:57:57]  lfn=log.45006595._055961.job.log.tgz.1
[2025-06-04 09:57:57]  mtime=0
[2025-06-04 09:57:57]  protocol_id=None
[2025-06-04 09:57:57]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 09:57:57]  replicas=None
[2025-06-04 09:57:57]  scope=mc23_13p6TeV
[2025-06-04 09:57:57]  status=None
[2025-06-04 09:57:57]  status_code=0
[2025-06-04 09:57:57]  storage_token=
[2025-06-04 09:57:57]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6679180015/log.45006595._055961.job.log.tgz.1
[2025-06-04 09:57:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/44/da/log.45006595._055961.job.log.tgz.1
[2025-06-04 09:57:57]  workdir=None
[2025-06-04 09:57:57] ]
[2025-06-04 09:57:57] 2025-06-04 13:57:34,478 | INFO     | transferring file log.45006595._055961.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6679180015/log.45006595._055961.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 09:57:57] 2025-06-04 13:57:34,478 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6679180015/log.45006595._055961.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._055961.job
[2025-06-04 09:57:57] 2025-06-04 13:57:34,489 | INFO     | adding to output.list: log.45006595._055961.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/44/da/log.45006595._055961.job.log.tg
[2025-06-04 09:57:57] 2025-06-04 13:57:34,490 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 09:57:57] 2025-06-04 13:57:34,490 | INFO     | summary of transferred files:
[2025-06-04 09:57:57] 2025-06-04 13:57:34,490 | INFO     |  -- lfn=log.45006595._055961.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 09:57:57] 2025-06-04 13:57:34,490 | INFO     | stage-out finished correctly
[2025-06-04 09:57:57] 2025-06-04 13:57:34,536 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 09:57:57] 2025-06-04 13:57:35,997 | INFO     | job 6679180015 has state=finished
[2025-06-04 09:57:57] 2025-06-04 13:57:35,997 | INFO     | preparing for final server update for job 6679180015 in state='finished'
[2025-06-04 09:57:57] 2025-06-04 13:57:35,997 | INFO     | this job has now completed (state=finished)
[2025-06-04 09:57:57] 2025-06-04 13:57:35,997 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 09:57:57] 2025-06-04 13:57:35,997 | INFO     | log transfer has been attempted: DONE
[2025-06-04 09:57:57] 2025-06-04 13:57:35,997 | INFO     | job 6679180015 has finished - writing final server update
[2025-06-04 09:57:57] 2025-06-04 13:57:35,998 | INFO     | total number of processed events: 400 (read)
[2025-06-04 09:57:57] 2025-06-04 13:57:36,011 | INFO     | executing command: lscpu
[2025-06-04 09:57:57] 2025-06-04 13:57:36,070 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 09:57:57] 2025-06-04 13:57:36,879 | WARNING  | process 3945538 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 09:57:57] 2025-06-04 13:57:36,879 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6679180015/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:57:57] 2025-06-04 13:57:37,006 | INFO     | number of running child processes to parent process 3945538: 1
[2025-06-04 09:57:57] 2025-06-04 13:57:37,006 | INFO     | maximum number of monitored processes: 6
[2025-06-04 09:57:57] 2025-06-04 13:57:38,428 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 09:57:57] 2025-06-04 13:57:38,429 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6679180015/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:57:57] 2025-06-04 13:57:38,429 | INFO     | extracted standard info from prmon json
[2025-06-04 09:57:57] 2025-06-04 13:57:38,429 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 09:57:57] 2025-06-04 13:57:38,429 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 09:57:57] 2025-06-04 13:57:38,429 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 09:57:57] 2025-06-04 13:57:38,429 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 09:57:57] 2025-06-04 13:57:38,430 | INFO     | fitting pss+swap vs Time
[2025-06-04 09:57:57] 2025-06-04 13:57:38,430 | INFO     | sum of square deviations: 6798267.0
[2025-06-04 09:57:57] 2025-06-04 13:57:38,430 | INFO     | sum of deviations: 3671426947.0
[2025-06-04 09:57:57] 2025-06-04 13:57:38,430 | INFO     | mean x: 1749044479.5
[2025-06-04 09:57:57] 2025-06-04 13:57:38,430 | INFO     | mean y: 2653442.285714286
[2025-06-04 09:57:57] 2025-06-04 13:57:38,430 | INFO     | -- intersect: -944574697452.8599
[2025-06-04 09:57:57] 2025-06-04 13:57:38,430 | INFO     | intersect: -944574697452.8599
[2025-06-04 09:57:57] 2025-06-04 13:57:38,430 | INFO     | chi2: 0.5599664256930357
[2025-06-04 09:57:57] 2025-06-04 13:57:38,430 | INFO     | -- intersect: -944574697452.8599
[2025-06-04 09:57:57] 2025-06-04 13:57:38,430 | INFO     | current memory leak: 540.05 B/s (using 28 data points, chi2=0.56)
[2025-06-04 09:57:57] 2025-06-04 13:57:38,431 | INFO     | ..............................
[2025-06-04 09:57:57] 2025-06-04 13:57:38,431 | INFO     | . Timing measurements:
[2025-06-04 09:57:57] 2025-06-04 13:57:38,431 | INFO     | . get job = 0 s
[2025-06-04 09:57:57] 2025-06-04 13:57:38,431 | INFO     | . initial setup = 2 s
[2025-06-04 09:57:57] 2025-06-04 13:57:38,431 | INFO     | . payload setup = 4 s
[2025-06-04 09:57:57] 2025-06-04 13:57:38,431 | INFO     | . stage-in = 0 s
[2025-06-04 09:57:57] 2025-06-04 13:57:38,431 | INFO     | . payload execution = 2100 s
[2025-06-04 09:57:57] 2025-06-04 13:57:38,431 | INFO     | . stage-out = 0 s
[2025-06-04 09:57:57] 2025-06-04 13:57:38,431 | INFO     | . log creation = 0 s
[2025-06-04 09:57:57] 2025-06-04 13:57:38,431 | INFO     | ..............................
[2025-06-04 09:57:57] 2025-06-04 13:57:38,526 | INFO     | 
[2025-06-04 09:57:57] 2025-06-04 13:57:38,526 | INFO     | job summary report
[2025-06-04 09:57:57] 2025-06-04 13:57:38,526 | INFO     | --------------------------------------------------
[2025-06-04 09:57:57] 2025-06-04 13:57:38,526 | INFO     | PanDA job id: 6679180015
[2025-06-04 09:57:57] 2025-06-04 13:57:38,526 | INFO     | task id: 45006595
[2025-06-04 09:57:57] 2025-06-04 13:57:38,526 | INFO     | errors: (none)
[2025-06-04 09:57:57] 2025-06-04 13:57:38,526 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 09:57:57] 2025-06-04 13:57:38,526 | INFO     | pilot state: finished 
[2025-06-04 09:57:57] 2025-06-04 13:57:38,526 | INFO     | transexitcode: 0
[2025-06-04 09:57:57] 2025-06-04 13:57:38,526 | INFO     | exeerrorcode: 0
[2025-06-04 09:57:57] 2025-06-04 13:57:38,526 | INFO     | exeerrordiag: 
[2025-06-04 09:57:57] 2025-06-04 13:57:38,526 | INFO     | exitcode: 0
[2025-06-04 09:57:57] 2025-06-04 13:57:38,526 | INFO     | exitmsg: OK
[2025-06-04 09:57:57] 2025-06-04 13:57:38,527 | INFO     | cpuconsumptiontime: 18608 s
[2025-06-04 09:57:57] 2025-06-04 13:57:38,527 | INFO     | nevents: 400
[2025-06-04 09:57:57] 2025-06-04 13:57:38,527 | INFO     | neventsw: 0
[2025-06-04 09:57:57] 2025-06-04 13:57:38,527 | INFO     | pid: 3945538
[2025-06-04 09:57:57] 2025-06-04 13:57:38,527 | INFO     | pgrp: 3945538
[2025-06-04 09:57:57] 2025-06-04 13:57:38,527 | INFO     | corecount: 12
[2025-06-04 09:57:57] 2025-06-04 13:57:38,527 | INFO     | event service: False
[2025-06-04 09:57:57] 2025-06-04 13:57:38,527 | INFO     | sizes: {0: 2397292, 3: 2397498, 11: 2397526, 2109: 2422505, 2110: 2431446, 2111: 2431502, 2114: 2431800}
[2025-06-04 09:57:57] 2025-06-04 13:57:38,527 | INFO     | --------------------------------------------------
[2025-06-04 09:57:57] 2025-06-04 13:57:38,527 | INFO     | 
[2025-06-04 09:57:57] 2025-06-04 13:57:38,527 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 09:57:57] 2025-06-04 13:57:38,539 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 09:57:57] 2025-06-04 13:57:38,539 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 09:57:57] 2025-06-04 13:57:38,539 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 09:57:57] 2025-06-04 13:57:38,539 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 09:57:57] 2025-06-04 13:57:38,539 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 09:57:57] 2025-06-04 13:57:38,539 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 09:57:57] 2025-06-04 13:57:38,539 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 09:57:57] 2025-06-04 13:57:38,539 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 09:57:57] 2025-06-04 13:57:38,539 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 09:57:57] 2025-06-04 13:57:38,539 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 09:57:57] 2025-06-04 13:57:38,539 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 09:57:57] 2025-06-04 13:57:38,539 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 09:57:57] 2025-06-04 13:57:38,539 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 09:57:57] 2025-06-04 13:57:38,539 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 09:57:57] 2025-06-04 13:57:38,539 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 09:57:57] 2025-06-04 13:57:38,539 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 09:57:57] 2025-06-04 13:57:38,540 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 09:57:57] 2025-06-04 13:57:38,540 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 09:57:57] 2025-06-04 13:57:38,540 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 09:57:57] 2025-06-04 13:57:38,540 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 09:57:57] 2025-06-04 13:57:38,540 | INFO     | job 6679180015 has completed (purged errors)
[2025-06-04 09:57:57] 2025-06-04 13:57:38,540 | INFO     | overall cleanup function is called
[2025-06-04 09:57:57] 2025-06-04 13:57:39,547 | INFO     | --- collectZombieJob: --- 10, [3945538]
[2025-06-04 09:57:57] 2025-06-04 13:57:39,547 | INFO     | zombie collector waiting for pid 3945538
[2025-06-04 09:57:57] 2025-06-04 13:57:39,547 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 09:57:57] 2025-06-04 13:57:39,547 | INFO     | collected zombie processes
[2025-06-04 09:57:57] 2025-06-04 13:57:39,547 | INFO     | will attempt to kill all subprocesses of pid=3945538
[2025-06-04 09:57:57] 2025-06-04 13:57:39,672 | INFO     | process IDs to be killed: [3945538] (in reverse order)
[2025-06-04 09:57:57] 2025-06-04 13:57:39,720 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 09:57:57] 2025-06-04 13:57:39,721 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 09:57:57] 2025-06-04 13:57:39,726 | INFO     | did not find any defunct processes belonging to 3945538
[2025-06-04 09:57:57] 2025-06-04 13:57:39,731 | INFO     | did not find any defunct processes belonging to 3945538
[2025-06-04 09:57:57] 2025-06-04 13:57:39,731 | INFO     | ready for new job
[2025-06-04 09:57:57] 2025-06-04 13:57:39,731 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 09:57:57] 2025-06-04 13:57:39,732 | INFO     | **************************************
[2025-06-04 09:57:57] 2025-06-04 13:57:39,732 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 09:57:57] 2025-06-04 13:57:39,732 | INFO     | **************************************
[2025-06-04 09:57:57] 2025-06-04 13:57:39,732 | INFO     | 
[2025-06-04 09:57:57] 2025-06-04 13:57:39,745 | INFO     | architecture information:
[2025-06-04 09:57:57] 2025-06-04 13:57:39,745 | INFO     | executing command: cat /etc/os-release
[2025-06-04 09:57:57] 2025-06-04 13:57:39,755 | INFO     | cat /etc/os-release:
[2025-06-04 09:57:57] NAME="CentOS Linux"
[2025-06-04 09:57:57] VERSION="7 (Core)"
[2025-06-04 09:57:57] ID="centos"
[2025-06-04 09:57:57] ID_LIKE="rhel fedora"
[2025-06-04 09:57:57] VERSION_ID="7"
[2025-06-04 09:57:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 09:57:57] ANSI_COLOR="0;31"
[2025-06-04 09:57:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 09:57:57] HOME_URL="https://www.centos.org/"
[2025-06-04 09:57:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 09:57:57] 
[2025-06-04 09:57:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 09:57:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 09:57:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 09:57:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 09:57:57] 
[2025-06-04 09:57:57] 2025-06-04 13:57:39,755 | INFO     | **************************************
[2025-06-04 09:57:57] 2025-06-04 13:57:40,258 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 09:57:57] 2025-06-04 13:57:40,269 | INFO     | sufficient remaining disk space (76370935808 B)
[2025-06-04 09:57:57] 2025-06-04 13:57:40,269 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 09:57:57] 2025-06-04 13:57:40,270 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 09:57:57] 2025-06-04 13:57:40,270 | INFO     | update_server=False
[2025-06-04 09:57:57] 2025-06-04 13:57:40,270 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 09:57:57] 2025-06-04 13:57:40,270 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:57:57] 2025-06-04 13:57:40,270 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 09:57:57] 2025-06-04 13:57:40,405 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 09:57:57] 2025-06-04 13:57:40,405 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 09:57:57] 2025-06-04 13:57:40,405 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 09:57:57] 2025-06-04 13:57:40,509 | INFO     | all job control threads have been joined
[2025-06-04 09:57:57] 2025-06-04 13:57:40,510 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:57:57] 2025-06-04 13:57:40,510 | INFO     | aborting loop
[2025-06-04 09:57:57] 2025-06-04 13:57:40,585 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 09:57:57] 2025-06-04 13:57:40,666 | INFO     | all data control threads have been joined
[2025-06-04 09:57:57] 2025-06-04 13:57:40,798 | INFO     | all payload control threads have been joined
[2025-06-04 09:57:57] 2025-06-04 13:57:41,275 | INFO     | [job] retrieve thread has finished
[2025-06-04 09:57:57] 2025-06-04 13:57:41,275 | INFO     | [job] queue monitor thread has finished
[2025-06-04 09:57:57] 2025-06-04 13:57:41,310 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 09:57:57] 2025-06-04 13:57:41,515 | INFO     | [job] control thread has finished
[2025-06-04 09:57:57] 2025-06-04 13:57:41,516 | INFO     | [job] job monitor thread has finished
[2025-06-04 09:57:57] 2025-06-04 13:57:41,671 | INFO     | [data] control thread has finished
[2025-06-04 09:57:57] 2025-06-04 13:57:41,698 | INFO     | [payload] validate_post thread has finished
[2025-06-04 09:57:57] 2025-06-04 13:57:41,764 | INFO     | [payload] failed_post thread has finished
[2025-06-04 09:57:57] 2025-06-04 13:57:41,804 | INFO     | [payload] control thread has finished
[2025-06-04 09:57:57] 2025-06-04 13:57:42,270 | INFO     | [data] copytool_out thread has finished
[2025-06-04 09:57:57] 2025-06-04 13:57:42,488 | INFO     | [data] copytool_in thread has finished
[2025-06-04 09:57:57] 2025-06-04 13:57:42,643 | INFO     | [job] validate thread has finished
[2025-06-04 09:57:57] 2025-06-04 13:57:42,646 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 09:57:57] 2025-06-04 13:57:42,754 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 09:57:57] 2025-06-04 13:57:44,589 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 09:57:57] 2025-06-04 13:57:51,052 | INFO     | job.realtimelogging is not enabled
[2025-06-04 09:57:57] 2025-06-04 13:57:52,057 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 09:57:57] 2025-06-04 13:57:52,751 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139699223250752)>', '<ExcThread(monitor, started 139698290808576)>']
[2025-06-04 09:57:57] 2025-06-04 13:57:53,470 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 09:57:57] 2025-06-04 13:57:53,470 | INFO     | [monitor] control thread has ended
[2025-06-04 09:57:57] 2025-06-04 13:57:57,776 | INFO     | all workflow threads have been joined
[2025-06-04 09:57:57] 2025-06-04 13:57:57,776 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 09:57:57] 2025-06-04 13:57:57,777 | INFO     | traces error code: 0
[2025-06-04 09:57:57] 2025-06-04 13:57:57,777 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 09:57:57] 2025-06-04 13:57:57,889 [wrapper] ==== pilot stdout END ====
[2025-06-04 09:57:57] 2025-06-04 13:57:57,890 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 09:57:57] 2025-06-04 13:57:57,892 [wrapper] pilotpid: 3939089
[2025-06-04 09:57:57] 2025-06-04 13:57:57,894 [wrapper] Pilot exit status: 0
[2025-06-04 09:57:57] 2025-06-04 13:57:57,901 [wrapper] pandaids: 6679180015
[2025-06-04 09:57:57] 2025-06-04 13:57:57,935 [wrapper] cleanup supervisor_pilot 3995465 3939090
[2025-06-04 09:57:57] 2025-06-04 13:57:57,937 [wrapper] Test setup, not cleaning
[2025-06-04 09:57:57] 2025-06-04 13:57:57,938 [wrapper] apfmon messages muted
[2025-06-04 09:57:57] 2025-06-04 13:57:57,940 [wrapper] ==== wrapper stdout END ====
[2025-06-04 09:57:57] 2025-06-04 13:57:57,942 [wrapper] ==== wrapper stderr END ====
[2025-06-04 09:57:57]  *** Error codes and diagnostics ***
[2025-06-04 09:57:57]     "exeErrorCode": 0,
[2025-06-04 09:57:57]     "exeErrorDiag": "",
[2025-06-04 09:57:57]     "pilotErrorCode": 0,
[2025-06-04 09:57:57]     "pilotErrorDiag": "",
[2025-06-04 09:57:57]  *** Listing of results directory ***
[2025-06-04 09:57:57] total 386948
[2025-06-04 09:57:57] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 04:46 pilot3.tar.gz
[2025-06-04 09:57:57] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 04:51 queuedata.json
[2025-06-04 09:57:57] -rwx------. 1 boincer umatlas     37140 Jun  4 04:52 runpilot2-wrapper.sh
[2025-06-04 09:57:57] -rw-r--r--. 1 boincer umatlas       100 Jun  4 09:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 09:57:57] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 09:22 run_atlas
[2025-06-04 09:57:57] -rw-r--r--. 1 boincer umatlas       105 Jun  4 09:22 job.xml
[2025-06-04 09:57:57] -rw-r--r--. 2 boincer umatlas 216253522 Jun  4 09:22 EVNT.45006593._001193.pool.root.1
[2025-06-04 09:57:57] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 09:22 start_atlas.sh
[2025-06-04 09:57:57] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 09:22 shared
[2025-06-04 09:57:57] -rw-r--r--. 2 boincer umatlas    508880 Jun  4 09:22 input.tar.gz
[2025-06-04 09:57:57] -rw-r--r--. 1 boincer umatlas         0 Jun  4 09:22 boinc_lockfile
[2025-06-04 09:57:57] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 09:22 pandaJob.out
[2025-06-04 09:57:57] -rw-------. 1 boincer umatlas    986819 Jun  4 09:22 agis_schedconf.cvmfs.json
[2025-06-04 09:57:57] -rw-------. 1 boincer umatlas   1598969 Jun  4 09:22 agis_ddmendpoints.agis.ALL.json
[2025-06-04 09:57:57] drwx------. 4 boincer umatlas      4096 Jun  4 09:22 pilot3
[2025-06-04 09:57:57] -rw-r--r--. 1 boincer umatlas      6842 Jun  4 09:56 init_data.xml
[2025-06-04 09:57:57] -rw-------. 1 boincer umatlas 174968736 Jun  4 09:57 HITS.45006595._055961.pool.root.1
[2025-06-04 09:57:57] -rw-r--r--. 1 boincer umatlas       529 Jun  4 09:57 boinc_task_state.xml
[2025-06-04 09:57:57] -rw-------. 1 boincer umatlas      1027 Jun  4 09:57 memory_monitor_summary.json
[2025-06-04 09:57:57] -rw-------. 1 boincer umatlas    351703 Jun  4 09:57 log.45006595._055961.job.log.tgz.1
[2025-06-04 09:57:57] -rw-------. 1 boincer umatlas        95 Jun  4 09:57 pilot_heartbeat.json
[2025-06-04 09:57:57] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 09:57 boinc_mmap_file
[2025-06-04 09:57:57] -rw-r--r--. 1 boincer umatlas        27 Jun  4 09:57 wrapper_checkpoint.txt
[2025-06-04 09:57:57] -rw-------. 1 boincer umatlas      7706 Jun  4 09:57 heartbeat.json
[2025-06-04 09:57:57] -rw-------. 1 boincer umatlas      4425 Jun  4 09:57 pilotlog.txt
[2025-06-04 09:57:57] -rw-------. 1 boincer umatlas    241052 Jun  4 09:57 log.45006595._055961.job.log.1
[2025-06-04 09:57:57] -rw-------. 1 boincer umatlas       357 Jun  4 09:57 output.list
[2025-06-04 09:57:57] -rw-r--r--. 1 boincer umatlas       620 Jun  4 09:57 runtime_log
[2025-06-04 09:57:57] -rw-------. 1 boincer umatlas    614400 Jun  4 09:57 result.tar.gz
[2025-06-04 09:57:57] -rw-r--r--. 1 boincer umatlas      8661 Jun  4 09:57 runtime_log.err
[2025-06-04 09:57:57] -rw-------. 1 boincer umatlas       648 Jun  4 09:57 lH1MDmz1yg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrqnKDmQTJcYn.diag
[2025-06-04 09:57:57] -rw-r--r--. 1 boincer umatlas     21108 Jun  4 09:57 stderr.txt
[2025-06-04 09:57:57] HITS file was successfully produced:
[2025-06-04 09:57:57] -rw-------. 1 boincer umatlas 174968736 Jun  4 09:57 shared/HITS.pool.root.1
[2025-06-04 09:57:57]  *** Contents of shared directory: ***
[2025-06-04 09:57:58] total 383176
[2025-06-04 09:57:58] -rw-r--r--. 2 boincer umatlas 216253522 Jun  4 09:22 ATLAS.root_0
[2025-06-04 09:57:58] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 09:22 start_atlas.sh
[2025-06-04 09:57:58] -rw-r--r--. 2 boincer umatlas    508880 Jun  4 09:22 input.tar.gz
[2025-06-04 09:57:58] -rw-------. 1 boincer umatlas 174968736 Jun  4 09:57 HITS.pool.root.1
[2025-06-04 09:57:58] -rw-------. 1 boincer umatlas    614400 Jun  4 09:57 result.tar.gz
09:57:59 (3935464): run_atlas exited; CPU time 18628.378536
09:57:59 (3935464): called boinc_finish(0)

</stderr_txt>
]]>

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