Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:32:05 (735739): wrapper (7.7.26015): starting
16:32:05 (735739): wrapper: running run_atlas (--nthreads 4)
[2025-06-06 16:32:05] Arguments: --nthreads 4
[2025-06-06 16:32:05] Threads: 4
[2025-06-06 16:32:05] Checking for CVMFS
[2025-06-06 16:32:05] No cvmfs_config command found, will try listing directly
[2025-06-06 16:32:05] CVMFS is ok
[2025-06-06 16:32:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 16:32:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 16:32:05] Further information can be found at the LHC@home message board.
[2025-06-06 16:32:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 16:32:05] Checking for apptainer binary...
[2025-06-06 16:32:05] which: no apptainer in ((null))
[2025-06-06 16:32:05] apptainer is not installed, using version from CVMFS
[2025-06-06 16:32:05] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 16:32:05] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2025-06-06 16:32:05] apptainer works
[2025-06-06 16:32:05] Set ATHENA_PROC_NUMBER=4
[2025-06-06 16:32:05] Set ATHENA_CORE_NUMBER=4
[2025-06-06 16:32:05] Starting ATLAS job with PandaID=6679227074
[2025-06-06 16:32:05] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:05:49 (996973): wrapper (7.7.26015): starting
18:05:49 (996973): wrapper: running run_atlas (--nthreads 4)
[2025-06-06 18:05:49] Arguments: --nthreads 4
[2025-06-06 18:05:49] Threads: 4
[2025-06-06 18:05:49] This job has been restarted, cleaning up previous attempt
[2025-06-06 18:05:49] Checking for CVMFS
[2025-06-06 18:05:49] No cvmfs_config command found, will try listing directly
[2025-06-06 18:05:49] CVMFS is ok
[2025-06-06 18:05:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 18:05:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 18:05:49] Further information can be found at the LHC@home message board.
[2025-06-06 18:05:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 18:05:49] Checking for apptainer binary...
[2025-06-06 18:05:49] which: no apptainer in ((null))
[2025-06-06 18:05:49] apptainer is not installed, using version from CVMFS
[2025-06-06 18:05:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 18:05:49] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2025-06-06 18:05:49] apptainer works
[2025-06-06 18:05:49] Set ATHENA_PROC_NUMBER=4
[2025-06-06 18:05:49] Set ATHENA_CORE_NUMBER=4
[2025-06-06 18:05:49] Starting ATLAS job with PandaID=6679227074
[2025-06-06 18:05:49] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 19:26:31]  *** The last 200 lines of the pilot log: ***
[2025-06-06 19:26:31]  status_code=0
[2025-06-06 19:26:31]  storage_token=
[2025-06-06 19:26:31]  surl=/scratch/boinc/var/slot28/slots/0/PanDA_Pilot-6679227074/log.45006595._056013.job.log.tgz.1
[2025-06-06 19:26:31]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3f/b6/log.45006595._056013.job.log.tgz.1
[2025-06-06 19:26:31]  workdir=None
[2025-06-06 19:26:31] ]
[2025-06-06 19:26:31] 2025-06-06 17:26:12,155 | INFO     | transferring file log.45006595._056013.job.log.tgz.1 from /scratch/boinc/var/slot28/slots/0/PanDA_Pilot-6679227074/log.45006595._056013.job.log.tgz.1 to /scratch/b
[2025-06-06 19:26:31] 2025-06-06 17:26:12,155 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot28/slots/0/PanDA_Pilot-6679227074/log.45006595._056013.job.log.tgz.1 /scratch/boinc/var/slot28/slots/0/lo
[2025-06-06 19:26:31] 2025-06-06 17:26:12,172 | INFO     | adding to output.list: log.45006595._056013.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3f/b6/log.45006595._056013.job.log.tg
[2025-06-06 19:26:31] 2025-06-06 17:26:12,172 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 19:26:31] 2025-06-06 17:26:12,172 | INFO     | summary of transferred files:
[2025-06-06 19:26:31] 2025-06-06 17:26:12,172 | INFO     |  -- lfn=log.45006595._056013.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 19:26:31] 2025-06-06 17:26:12,172 | INFO     | stage-out finished correctly
[2025-06-06 19:26:31] 2025-06-06 17:26:13,675 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 19:26:31] 2025-06-06 17:26:14,598 | INFO     | job 6679227074 has state=finished
[2025-06-06 19:26:31] 2025-06-06 17:26:14,599 | INFO     | preparing for final server update for job 6679227074 in state='finished'
[2025-06-06 19:26:31] 2025-06-06 17:26:14,599 | INFO     | this job has now completed (state=finished)
[2025-06-06 19:26:31] 2025-06-06 17:26:14,599 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 19:26:31] 2025-06-06 17:26:14,599 | INFO     | log transfer has been attempted: DONE
[2025-06-06 19:26:31] 2025-06-06 17:26:14,599 | INFO     | job 6679227074 has finished - writing final server update
[2025-06-06 19:26:31] 2025-06-06 17:26:14,600 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_990989/.job.ad'
[2025-06-06 19:26:31] 2025-06-06 17:26:14,600 | INFO     | total number of processed events: 400 (read)
[2025-06-06 19:26:31] 2025-06-06 17:26:14,605 | INFO     | executing command: lscpu
[2025-06-06 19:26:31] 2025-06-06 17:26:14,674 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 19:26:31] 2025-06-06 17:26:16,506 | WARNING  | process 1008375 can no longer be monitored (due to stat problems) - aborting
[2025-06-06 19:26:31] 2025-06-06 17:26:16,507 | INFO     | using path: /scratch/boinc/var/slot28/slots/0/PanDA_Pilot-6679227074/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 19:26:31] 2025-06-06 17:26:16,507 | INFO     | using path: /scratch/boinc/var/slot28/slots/0/PanDA_Pilot-6679227074/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 19:26:31] 2025-06-06 17:26:16,508 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2317310 B
[2025-06-06 19:26:31] 2025-06-06 17:26:16,508 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15556 B
[2025-06-06 19:26:31] 2025-06-06 17:26:16,508 | INFO     | executing command: df -mP /scratch/boinc/var/slot28/slots/0
[2025-06-06 19:26:31] 2025-06-06 17:26:17,993 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-06 19:26:31] 2025-06-06 17:26:17,994 | INFO     | using path: /scratch/boinc/var/slot28/slots/0/PanDA_Pilot-6679227074/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 19:26:31] 2025-06-06 17:26:17,994 | INFO     | extracted standard info from prmon json
[2025-06-06 19:26:31] 2025-06-06 17:26:17,994 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 19:26:31] 2025-06-06 17:26:17,994 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 19:26:31] 2025-06-06 17:26:17,995 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 19:26:31] 2025-06-06 17:26:17,995 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 19:26:31] 2025-06-06 17:26:18,000 | INFO     | fitting pss+swap vs Time
[2025-06-06 19:26:31] 2025-06-06 17:26:18,001 | INFO     | sum of square deviations: 115715658.0
[2025-06-06 19:26:31] 2025-06-06 17:26:18,001 | INFO     | sum of deviations: 357696253.0
[2025-06-06 19:26:31] 2025-06-06 17:26:18,001 | INFO     | mean x: 1749228455.5
[2025-06-06 19:26:31] 2025-06-06 17:26:18,001 | INFO     | mean y: 2322034.777777778
[2025-06-06 19:26:31] 2025-06-06 17:26:18,001 | INFO     | -- intersect: -5404832666.562012
[2025-06-06 19:26:31] 2025-06-06 17:26:18,001 | INFO     | intersect: -5404832666.562012
[2025-06-06 19:26:31] 2025-06-06 17:26:18,001 | INFO     | chi2: 0.0012574368929414686
[2025-06-06 19:26:31] 2025-06-06 17:26:18,001 | INFO     | -- intersect: -5404832666.562012
[2025-06-06 19:26:31] 2025-06-06 17:26:18,002 | INFO     | current memory leak: 3.09 B/s (using 72 data points, chi2=0.00)
[2025-06-06 19:26:31] 2025-06-06 17:26:18,002 | INFO     | ..............................
[2025-06-06 19:26:31] 2025-06-06 17:26:18,002 | INFO     | . Timing measurements:
[2025-06-06 19:26:31] 2025-06-06 17:26:18,002 | INFO     | . get job = 0 s
[2025-06-06 19:26:31] 2025-06-06 17:26:18,002 | INFO     | . initial setup = 0 s
[2025-06-06 19:26:31] 2025-06-06 17:26:18,002 | INFO     | . payload setup = 6 s
[2025-06-06 19:26:31] 2025-06-06 17:26:18,002 | INFO     | . stage-in = 0 s
[2025-06-06 19:26:31] 2025-06-06 17:26:18,002 | INFO     | . payload execution = 4787 s
[2025-06-06 19:26:31] 2025-06-06 17:26:18,002 | INFO     | . stage-out = 0 s
[2025-06-06 19:26:31] 2025-06-06 17:26:18,002 | INFO     | . log creation = 0 s
[2025-06-06 19:26:31] 2025-06-06 17:26:18,002 | INFO     | ..............................
[2025-06-06 19:26:31] 2025-06-06 17:26:18,021 | INFO     | sufficient remaining disk space (3385599197184 B)
[2025-06-06 19:26:31] 2025-06-06 17:26:18,027 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-06 19:26:31] 2025-06-06 17:26:18,065 | INFO     | size of work directory /scratch/boinc/var/slot28/slots/0/PanDA_Pilot-6679227074: 2616418 B (within 2537553920 B limit)
[2025-06-06 19:26:31] 2025-06-06 17:26:18,065 | INFO     | pfn file=/scratch/boinc/var/slot28/slots/0/PanDA_Pilot-6679227074/HITS.45006595._056013.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-06 19:26:31] 2025-06-06 17:26:18,065 | INFO     | total size of present files: 0 B (workdir size: 2616418 B)
[2025-06-06 19:26:31] 2025-06-06 17:26:18,066 | INFO     | output file size check: skipping output file /scratch/boinc/var/slot28/slots/0/PanDA_Pilot-6679227074/HITS.45006595._056013.pool.root.1 since it does not exist
[2025-06-06 19:26:31] 2025-06-06 17:26:18,338 | INFO     | number of running child processes to parent process 1008375: 1
[2025-06-06 19:26:31] 2025-06-06 17:26:18,338 | INFO     | maximum number of monitored processes: 6
[2025-06-06 19:26:31] 2025-06-06 17:26:18,338 | INFO     | aborting job monitoring since job object (job id=6679227074) has expired
[2025-06-06 19:26:31] 2025-06-06 17:26:18,465 | INFO     | 
[2025-06-06 19:26:31] 2025-06-06 17:26:18,465 | INFO     | job summary report
[2025-06-06 19:26:31] 2025-06-06 17:26:18,465 | INFO     | --------------------------------------------------
[2025-06-06 19:26:31] 2025-06-06 17:26:18,466 | INFO     | PanDA job id: 6679227074
[2025-06-06 19:26:31] 2025-06-06 17:26:18,466 | INFO     | task id: 45006595
[2025-06-06 19:26:31] 2025-06-06 17:26:18,466 | INFO     | errors: (none)
[2025-06-06 19:26:31] 2025-06-06 17:26:18,466 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 19:26:31] 2025-06-06 17:26:18,466 | INFO     | pilot state: finished 
[2025-06-06 19:26:31] 2025-06-06 17:26:18,466 | INFO     | transexitcode: 0
[2025-06-06 19:26:31] 2025-06-06 17:26:18,466 | INFO     | exeerrorcode: 0
[2025-06-06 19:26:31] 2025-06-06 17:26:18,466 | INFO     | exeerrordiag: 
[2025-06-06 19:26:31] 2025-06-06 17:26:18,466 | INFO     | exitcode: 0
[2025-06-06 19:26:31] 2025-06-06 17:26:18,466 | INFO     | exitmsg: OK
[2025-06-06 19:26:31] 2025-06-06 17:26:18,466 | INFO     | cpuconsumptiontime: 18139 s
[2025-06-06 19:26:31] 2025-06-06 17:26:18,466 | INFO     | nevents: 400
[2025-06-06 19:26:31] 2025-06-06 17:26:18,466 | INFO     | neventsw: 0
[2025-06-06 19:26:31] 2025-06-06 17:26:18,466 | INFO     | pid: 1008375
[2025-06-06 19:26:31] 2025-06-06 17:26:18,466 | INFO     | pgrp: 1008375
[2025-06-06 19:26:31] 2025-06-06 17:26:18,466 | INFO     | corecount: 4
[2025-06-06 19:26:31] 2025-06-06 17:26:18,466 | INFO     | event service: False
[2025-06-06 19:26:31] 2025-06-06 17:26:18,466 | INFO     | sizes: {0: 2397301, 5: 2397507, 11: 2397563, 4798: 2423752, 4799: 2432715, 4801: 2432771, 4805: 2433069}
[2025-06-06 19:26:31] 2025-06-06 17:26:18,466 | INFO     | --------------------------------------------------
[2025-06-06 19:26:31] 2025-06-06 17:26:18,466 | INFO     | 
[2025-06-06 19:26:31] 2025-06-06 17:26:18,466 | INFO     | executing command: ls -lF /scratch/boinc/var/slot28/slots/0
[2025-06-06 19:26:31] 2025-06-06 17:26:18,485 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 19:26:31] 2025-06-06 17:26:18,485 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 19:26:31] 2025-06-06 17:26:18,485 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 19:26:31] 2025-06-06 17:26:18,485 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 19:26:31] 2025-06-06 17:26:18,485 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 19:26:31] 2025-06-06 17:26:18,485 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 19:26:31] 2025-06-06 17:26:18,485 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 19:26:31] 2025-06-06 17:26:18,485 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 19:26:31] 2025-06-06 17:26:18,485 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 19:26:31] 2025-06-06 17:26:18,485 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 19:26:31] 2025-06-06 17:26:18,485 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 19:26:31] 2025-06-06 17:26:18,485 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 19:26:31] 2025-06-06 17:26:18,486 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 19:26:31] 2025-06-06 17:26:18,486 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 19:26:31] 2025-06-06 17:26:18,486 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 19:26:31] 2025-06-06 17:26:18,486 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 19:26:31] 2025-06-06 17:26:18,486 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 19:26:31] 2025-06-06 17:26:18,486 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 19:26:31] 2025-06-06 17:26:18,486 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 19:26:31] 2025-06-06 17:26:18,486 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 19:26:31] 2025-06-06 17:26:18,486 | INFO     | job 6679227074 has completed (purged errors)
[2025-06-06 19:26:31] 2025-06-06 17:26:18,486 | INFO     | overall cleanup function is called
[2025-06-06 19:26:31] 2025-06-06 17:26:19,494 | INFO     | --- collectZombieJob: --- 10, [1008375]
[2025-06-06 19:26:31] 2025-06-06 17:26:19,494 | INFO     | zombie collector waiting for pid 1008375
[2025-06-06 19:26:31] 2025-06-06 17:26:19,495 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 19:26:31] 2025-06-06 17:26:19,495 | INFO     | collected zombie processes
[2025-06-06 19:26:31] 2025-06-06 17:26:19,495 | INFO     | will attempt to kill all subprocesses of pid=1008375
[2025-06-06 19:26:31] 2025-06-06 17:26:19,770 | INFO     | process IDs to be killed: [1008375] (in reverse order)
[2025-06-06 19:26:31] 2025-06-06 17:26:19,878 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 19:26:31] 2025-06-06 17:26:19,878 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 19:26:31] 2025-06-06 17:26:19,890 | INFO     | did not find any defunct processes belonging to 1008375
[2025-06-06 19:26:31] 2025-06-06 17:26:19,899 | INFO     | did not find any defunct processes belonging to 1008375
[2025-06-06 19:26:31] 2025-06-06 17:26:19,899 | INFO     | ready for new job
[2025-06-06 19:26:31] 2025-06-06 17:26:19,899 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 19:26:31] 2025-06-06 17:26:19,900 | INFO     | **************************************
[2025-06-06 19:26:31] 2025-06-06 17:26:19,900 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 19:26:31] 2025-06-06 17:26:19,900 | INFO     | **************************************
[2025-06-06 19:26:31] 2025-06-06 17:26:19,900 | INFO     | 
[2025-06-06 19:26:31] 2025-06-06 17:26:19,905 | INFO     | architecture information:
[2025-06-06 19:26:31] 2025-06-06 17:26:19,906 | INFO     | executing command: cat /etc/os-release
[2025-06-06 19:26:31] 2025-06-06 17:26:19,918 | INFO     | cat /etc/os-release:
[2025-06-06 19:26:31] NAME="CentOS Linux"
[2025-06-06 19:26:31] VERSION="7 (Core)"
[2025-06-06 19:26:31] ID="centos"
[2025-06-06 19:26:31] ID_LIKE="rhel fedora"
[2025-06-06 19:26:31] VERSION_ID="7"
[2025-06-06 19:26:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 19:26:31] ANSI_COLOR="0;31"
[2025-06-06 19:26:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 19:26:31] HOME_URL="https://www.centos.org/"
[2025-06-06 19:26:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 19:26:31] 
[2025-06-06 19:26:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 19:26:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 19:26:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 19:26:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 19:26:31] 
[2025-06-06 19:26:31] 2025-06-06 17:26:19,918 | INFO     | **************************************
[2025-06-06 19:26:31] 2025-06-06 17:26:20,421 | INFO     | executing command: df -mP /scratch/boinc/var/slot28/slots/0
[2025-06-06 19:26:31] 2025-06-06 17:26:20,434 | INFO     | sufficient remaining disk space (3385602342912 B)
[2025-06-06 19:26:31] 2025-06-06 17:26:20,434 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 19:26:31] 2025-06-06 17:26:20,434 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 19:26:31] 2025-06-06 17:26:20,434 | INFO     | update_server=False
[2025-06-06 19:26:31] 2025-06-06 17:26:20,435 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 19:26:31] 2025-06-06 17:26:20,435 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 19:26:31] 2025-06-06 17:26:20,435 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 19:26:31] 2025-06-06 17:26:20,453 | INFO     | all job control threads have been joined
[2025-06-06 19:26:31] 2025-06-06 17:26:20,841 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-06 19:26:31] 2025-06-06 17:26:20,841 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-06 19:26:31] 2025-06-06 17:26:20,841 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 19:26:31] 2025-06-06 17:26:20,842 | INFO     | will abort loop
[2025-06-06 19:26:31] 2025-06-06 17:26:20,925 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 19:26:31] 2025-06-06 17:26:20,925 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 19:26:31] 2025-06-06 17:26:20,925 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 19:26:31] 2025-06-06 17:26:21,129 | INFO     | all data control threads have been joined
[2025-06-06 19:26:31] 2025-06-06 17:26:21,440 | INFO     | [job] retrieve thread has finished
[2025-06-06 19:26:31] 2025-06-06 17:26:21,459 | INFO     | [job] control thread has finished
[2025-06-06 19:26:31] 2025-06-06 17:26:21,620 | INFO     | [payload] validate_post thread has finished
[2025-06-06 19:26:31] 2025-06-06 17:26:21,783 | INFO     | all payload control threads have been joined
[2025-06-06 19:26:31] 2025-06-06 17:26:21,847 | INFO     | [job] job monitor thread has finished
[2025-06-06 19:26:31] 2025-06-06 17:26:22,135 | INFO     | [data] control thread has finished
[2025-06-06 19:26:31] 2025-06-06 17:26:22,252 | INFO     | [job] validate thread has finished
[2025-06-06 19:26:31] 2025-06-06 17:26:22,265 | INFO     | [payload] failed_post thread has finished
[2025-06-06 19:26:31] 2025-06-06 17:26:22,440 | INFO     | [data] copytool_out thread has finished
[2025-06-06 19:26:31] 2025-06-06 17:26:22,459 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 19:26:31] 2025-06-06 17:26:22,654 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 19:26:31] 2025-06-06 17:26:22,670 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 19:26:31] 2025-06-06 17:26:22,788 | INFO     | [payload] control thread has finished
[2025-06-06 19:26:31] 2025-06-06 17:26:22,810 | INFO     | [data] copytool_in thread has finished
[2025-06-06 19:26:31] 2025-06-06 17:26:22,840 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 19:26:31] 2025-06-06 17:26:23,075 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 19:26:31] 2025-06-06 17:26:24,081 | INFO     | [job] queue monitor thread has finished
[2025-06-06 19:26:31] 2025-06-06 17:26:24,441 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 19:26:31] 2025-06-06 17:26:26,005 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22651313862464)>', '<ExcThread(monitor, started 22651076568832)>']
[2025-06-06 19:26:31] 2025-06-06 17:26:26,955 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 19:26:31] 2025-06-06 17:26:26,956 | INFO     | [monitor] control thread has ended
[2025-06-06 19:26:31] 2025-06-06 17:26:31,030 | INFO     | all workflow threads have been joined
[2025-06-06 19:26:31] 2025-06-06 17:26:31,031 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 19:26:31] 2025-06-06 17:26:31,031 | INFO     | traces error code: 0
[2025-06-06 19:26:31] 2025-06-06 17:26:31,031 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 19:26:31] 2025-06-06 17:26:31,134 [wrapper] ==== pilot stdout END ====
[2025-06-06 19:26:31] 2025-06-06 17:26:31,136 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 19:26:31] 2025-06-06 17:26:31,138 [wrapper] pilotpid: 1000947
[2025-06-06 19:26:31] 2025-06-06 17:26:31,141 [wrapper] Pilot exit status: 0
[2025-06-06 19:26:31] 2025-06-06 17:26:31,149 [wrapper] pandaids: 6679227074 6679227074
[2025-06-06 19:26:31] 2025-06-06 17:26:31,221 [wrapper] cleanup supervisor_pilot 1250633 1000948
[2025-06-06 19:26:31] 2025-06-06 17:26:31,223 [wrapper] Test setup, not cleaning
[2025-06-06 19:26:31] 2025-06-06 17:26:31,226 [wrapper] apfmon messages muted
[2025-06-06 19:26:31] 2025-06-06 17:26:31,228 [wrapper] ==== wrapper stdout END ====
[2025-06-06 19:26:31] 2025-06-06 17:26:31,230 [wrapper] ==== wrapper stderr END ====
[2025-06-06 19:26:31]  *** Error codes and diagnostics ***
[2025-06-06 19:26:31]     "exeErrorCode": 0,
[2025-06-06 19:26:31]     "exeErrorDiag": "",
[2025-06-06 19:26:31]     "pilotErrorCode": 0,
[2025-06-06 19:26:31]     "pilotErrorDiag": "",
[2025-06-06 19:26:31]  *** Listing of results directory ***
[2025-06-06 19:26:31] total 595392
[2025-06-06 19:26:31] drwx------ 4 boinc boinc      4096 Apr  3 10:00 pilot3
[2025-06-06 19:26:31] -rw-r--r-- 1 boinc boinc    495897 Jun  4 10:46 pilot3.tar.gz
[2025-06-06 19:26:31] -rwx------ 1 boinc boinc     37140 Jun  4 10:54 runpilot2-wrapper.sh
[2025-06-06 19:26:31] -rw-r--r-- 1 boinc boinc      5111 Jun  4 10:54 queuedata.json
[2025-06-06 19:26:31] -rw-r--r-- 1 boinc boinc       100 Jun  6 16:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 19:26:31] -rwxr-xr-x 1 boinc boinc      7986 Jun  6 16:32 run_atlas
[2025-06-06 19:26:31] -rw-r--r-- 1 boinc boinc       105 Jun  6 16:32 job.xml
[2025-06-06 19:26:31] -rw-r--r-- 3 boinc boinc 213337635 Jun  6 16:32 EVNT.45006593._000421.pool.root.1
[2025-06-06 19:26:31] -rw-r--r-- 3 boinc boinc 213337635 Jun  6 16:32 ATLAS.root_0
[2025-06-06 19:26:31] -rw-r--r-- 2 boinc boinc     15093 Jun  6 16:32 start_atlas.sh
[2025-06-06 19:26:31] drwxrwx--x 2 boinc boinc      4096 Jun  6 16:32 shared
[2025-06-06 19:26:31] -rw-r--r-- 2 boinc boinc    508884 Jun  6 16:32 input.tar.gz
[2025-06-06 19:26:31] -rw-r--r-- 1 boinc boinc         0 Jun  6 16:32 boinc_lockfile
[2025-06-06 19:26:31] -rw------- 1 boinc boinc   1598969 Jun  6 16:32 agis_ddmendpoints.agis.ALL.json
[2025-06-06 19:26:31] -rw-r--r-- 1 boinc boinc      6690 Jun  6 18:05 init_data.xml
[2025-06-06 19:26:31] -rw-r--r-- 1 boinc boinc      2524 Jun  6 18:05 pandaJob.out
[2025-06-06 19:26:31] -rw------- 1 boinc boinc    985740 Jun  6 18:05 agis_schedconf.cvmfs.json
[2025-06-06 19:26:31] -rw------- 1 boinc boinc        97 Jun  6 19:25 pilot_heartbeat.json
[2025-06-06 19:26:31] -rw------- 1 boinc boinc 177732130 Jun  6 19:25 HITS.45006595._056013.pool.root.1
[2025-06-06 19:26:31] -rw-r--r-- 1 boinc boinc       529 Jun  6 19:25 boinc_task_state.xml
[2025-06-06 19:26:31] -rw------- 1 boinc boinc      1027 Jun  6 19:26 memory_monitor_summary.json
[2025-06-06 19:26:31] -rw------- 1 boinc boinc    240685 Jun  6 19:26 log.45006595._056013.job.log.tgz.1
[2025-06-06 19:26:31] -rw------- 1 boinc boinc      7692 Jun  6 19:26 heartbeat.json
[2025-06-06 19:26:31] -rw-r--r-- 1 boinc boinc        27 Jun  6 19:26 wrapper_checkpoint.txt
[2025-06-06 19:26:31] -rw------- 1 boinc boinc      4550 Jun  6 19:26 pilotlog.txt
[2025-06-06 19:26:31] -rw-r--r-- 1 boinc boinc      8192 Jun  6 19:26 boinc_mmap_file
[2025-06-06 19:26:31] -rw------- 1 boinc boinc    478545 Jun  6 19:26 log.45006595._056013.job.log.1
[2025-06-06 19:26:31] -rw------- 1 boinc boinc       357 Jun  6 19:26 output.list
[2025-06-06 19:26:31] -rw-r--r-- 1 boinc boinc       620 Jun  6 19:26 runtime_log
[2025-06-06 19:26:31] -rw------- 1 boinc boinc    737280 Jun  6 19:26 result.tar.gz
[2025-06-06 19:26:31] -rw-r--r-- 1 boinc boinc      9102 Jun  6 19:26 runtime_log.err
[2025-06-06 19:26:31] -rw------- 1 boinc boinc       785 Jun  6 19:26 5M6KDm73yg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmlzaKDmIVT2Vn.diag
[2025-06-06 19:26:31] -rw-r--r-- 1 boinc boinc     24127 Jun  6 19:26 stderr.txt
[2025-06-06 19:26:31] HITS file was successfully produced:
[2025-06-06 19:26:31] -rw------- 1 boinc boinc 177732130 Jun  6 19:25 shared/HITS.pool.root.1
[2025-06-06 19:26:31]  *** Contents of shared directory: ***
[2025-06-06 19:26:31] total 383152
[2025-06-06 19:26:31] -rw-r--r-- 3 boinc boinc 213337635 Jun  6 16:32 ATLAS.root_0
[2025-06-06 19:26:31] -rw-r--r-- 2 boinc boinc     15093 Jun  6 16:32 start_atlas.sh
[2025-06-06 19:26:31] -rw-r--r-- 2 boinc boinc    508884 Jun  6 16:32 input.tar.gz
[2025-06-06 19:26:31] -rw------- 1 boinc boinc 177732130 Jun  6 19:25 HITS.pool.root.1
[2025-06-06 19:26:31] -rw------- 1 boinc boinc    737280 Jun  6 19:26 result.tar.gz
19:26:33 (996973): run_atlas exited; CPU time 18248.418068
19:26:33 (996973): called boinc_finish(0)

</stderr_txt>
]]>

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