Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:59:13 (1839): wrapper (7.7.26015): starting
00:59:13 (1839): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 00:59:13] Arguments: --nthreads 8
[2025-06-05 00:59:13] Threads: 8
[2025-06-05 00:59:13] Checking for CVMFS
[2025-06-05 00:59:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 00:59:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 00:59:14] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 00:59:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 00:59:15] 2.11.2.0 26432 33827 93352 146797 0 159 18412752 25165825 2860 130560 0 17611278 99.767 20818421 2125 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 00:59:15] CVMFS is ok
[2025-06-05 00:59:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 00:59:15] Checking for apptainer binary...
[2025-06-05 00:59:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 00:59:15] Running /usr/bin/apptainer --version
[2025-06-05 00:59:15] apptainer version 1.3.2-1.el7
[2025-06-05 00:59:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 00:59:17] cg-vwn331.simple-grid.lan
[2025-06-05 00:59:17] apptainer works
[2025-06-05 00:59:17] Set ATHENA_PROC_NUMBER=8
[2025-06-05 00:59:17] Set ATHENA_CORE_NUMBER=8
[2025-06-05 00:59:17] Starting ATLAS job with PandaID=6679113741
[2025-06-05 00:59:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 07:50:45]  *** The last 200 lines of the pilot log: ***
[2025-06-05 07:50:46] 2025-06-05 02:49:39,368 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6679113741/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 07:50:46] 2025-06-05 02:49:39,369 | INFO     | extracted standard info from prmon json
[2025-06-05 07:50:46] 2025-06-05 02:49:39,369 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 07:50:46] 2025-06-05 02:49:39,369 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 07:50:46] 2025-06-05 02:49:39,370 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 07:50:46] 2025-06-05 02:49:39,370 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 07:50:46] 2025-06-05 02:49:39,375 | INFO     | fitting pss+swap vs Time
[2025-06-05 07:50:46] 2025-06-05 02:49:39,376 | INFO     | sum of square deviations: 3485088600.0
[2025-06-05 07:50:46] 2025-06-05 02:49:39,378 | INFO     | sum of deviations: 14186646566.499998
[2025-06-05 07:50:46] 2025-06-05 02:49:39,378 | INFO     | mean x: 1749084858.5
[2025-06-05 07:50:46] 2025-06-05 02:49:39,378 | INFO     | mean y: 2461572.433035714
[2025-06-05 07:50:46] 2025-06-05 02:49:39,378 | INFO     | -- intersect: -7117486167.878692
[2025-06-05 07:50:46] 2025-06-05 02:49:39,378 | INFO     | intersect: -7117486167.878692
[2025-06-05 07:50:46] 2025-06-05 02:49:39,379 | INFO     | chi2: 2.3565159328958822
[2025-06-05 07:50:46] 2025-06-05 02:49:39,379 | INFO     | sum of square deviations: 3256879670.0
[2025-06-05 07:50:46] 2025-06-05 02:49:39,381 | INFO     | sum of deviations: 28282531904.000008
[2025-06-05 07:50:46] 2025-06-05 02:49:39,381 | INFO     | mean x: 1749084706.0
[2025-06-05 07:50:46] 2025-06-05 02:49:39,382 | INFO     | mean y: 2470814.1232876712
[2025-06-05 07:50:46] 2025-06-05 02:49:39,382 | INFO     | -- intersect: -15186467375.982912
[2025-06-05 07:50:46] 2025-06-05 02:49:39,382 | INFO     | intersect: -15186467375.982912
[2025-06-05 07:50:46] 2025-06-05 02:49:39,382 | INFO     | chi2: 1.5875636554360824
[2025-06-05 07:50:46] 2025-06-05 02:49:39,391 | INFO     | current chi2=1.5875636554360824 (change=32.630896601443624 %)
[2025-06-05 07:50:46] 2025-06-05 02:49:39,391 | INFO     | sum of square deviations: 3038856977.5
[2025-06-05 07:50:46] 2025-06-05 02:49:39,393 | INFO     | sum of deviations: 27443933672.000004
[2025-06-05 07:50:46] 2025-06-05 02:49:39,393 | INFO     | mean x: 1749084553.5
[2025-06-05 07:50:46] 2025-06-05 02:49:39,394 | INFO     | mean y: 2470227.448598131
[2025-06-05 07:50:46] 2025-06-05 02:49:39,394 | INFO     | -- intersect: -15793521761.770885
[2025-06-05 07:50:46] 2025-06-05 02:49:39,394 | INFO     | intersect: -15793521761.770885
[2025-06-05 07:50:46] 2025-06-05 02:49:39,394 | INFO     | chi2: 1.588538368221816
[2025-06-05 07:50:46] 2025-06-05 02:49:39,394 | INFO     | current chi2=1.588538368221816 (change=-0.06139676871513146 %)
[2025-06-05 07:50:46] 2025-06-05 02:49:39,395 | INFO     | right removable region: 213
[2025-06-05 07:50:46] 2025-06-05 02:49:39,395 | INFO     | sum of square deviations: 3256879670.0
[2025-06-05 07:50:46] 2025-06-05 02:49:39,397 | INFO     | sum of deviations: -21301538001.0
[2025-06-05 07:50:46] 2025-06-05 02:49:39,397 | INFO     | mean x: 1749085011.0
[2025-06-05 07:50:46] 2025-06-05 02:49:39,397 | INFO     | mean y: 2485065.894977169
[2025-06-05 07:50:46] 2025-06-05 02:49:39,397 | INFO     | -- intersect: 11442330747.634888
[2025-06-05 07:50:46] 2025-06-05 02:49:39,398 | INFO     | intersect: 11442330747.634888
[2025-06-05 07:50:46] 2025-06-05 02:49:39,398 | INFO     | chi2: 0.8684333882376821
[2025-06-05 07:50:46] 2025-06-05 02:49:39,398 | INFO     | current chi2=0.8684333882376821 (change=63.14756984602777 %)
[2025-06-05 07:50:46] 2025-06-05 02:49:39,399 | INFO     | sum of square deviations: 3038856977.5
[2025-06-05 07:50:46] 2025-06-05 02:49:39,400 | INFO     | sum of deviations: -18003467898.0
[2025-06-05 07:50:46] 2025-06-05 02:49:39,401 | INFO     | mean x: 1749085163.5
[2025-06-05 07:50:46] 2025-06-05 02:49:39,401 | INFO     | mean y: 2482721.4018691587
[2025-06-05 07:50:46] 2025-06-05 02:49:39,401 | INFO     | -- intersect: 10364799482.306532
[2025-06-05 07:50:46] 2025-06-05 02:49:39,401 | INFO     | intersect: 10364799482.306532
[2025-06-05 07:50:46] 2025-06-05 02:49:39,401 | INFO     | chi2: 0.8491051527484939
[2025-06-05 07:50:46] 2025-06-05 02:49:39,402 | INFO     | current chi2=0.8491051527484939 (change=2.2256439873196485 %)
[2025-06-05 07:50:46] 2025-06-05 02:49:39,402 | INFO     | left removable region: 20
[2025-06-05 07:50:46] 2025-06-05 02:49:39,402 | INFO     | sum of square deviations: 2229146912.0
[2025-06-05 07:50:46] 2025-06-05 02:49:39,404 | INFO     | sum of deviations: 4094955803.0000005
[2025-06-05 07:50:46] 2025-06-05 02:49:39,404 | INFO     | mean x: 1749085133.0
[2025-06-05 07:50:46] 2025-06-05 02:49:39,404 | INFO     | mean y: 2486258.445595855
[2025-06-05 07:50:46] 2025-06-05 02:49:39,404 | INFO     | -- intersect: -3210593272.904457
[2025-06-05 07:50:46] 2025-06-05 02:49:39,404 | INFO     | intersect: -3210593272.904457
[2025-06-05 07:50:46] 2025-06-05 02:49:39,405 | INFO     | chi2: 0.0012250477498293416
[2025-06-05 07:50:46] 2025-06-05 02:49:39,405 | INFO     | -- intersect: -3210593272.904457
[2025-06-05 07:50:46] 2025-06-05 02:49:39,405 | INFO     | current memory leak: 1.84 B/s (using 193 data points, chi2=0.00)
[2025-06-05 07:50:46] 2025-06-05 02:49:39,406 | INFO     | ..............................
[2025-06-05 07:50:46] 2025-06-05 02:49:39,406 | INFO     | . Timing measurements:
[2025-06-05 07:50:46] 2025-06-05 02:49:39,406 | INFO     | . get job = 0 s
[2025-06-05 07:50:46] 2025-06-05 02:49:39,407 | INFO     | . initial setup = 2 s
[2025-06-05 07:50:46] 2025-06-05 02:49:39,407 | INFO     | . payload setup = 16 s
[2025-06-05 07:50:46] 2025-06-05 02:49:39,407 | INFO     | . stage-in = 0 s
[2025-06-05 07:50:46] 2025-06-05 02:49:39,407 | INFO     | . payload execution = 13634 s
[2025-06-05 07:50:46] 2025-06-05 02:49:39,407 | INFO     | . stage-out = 8 s
[2025-06-05 07:50:46] 2025-06-05 02:49:39,407 | INFO     | . log creation = 3 s
[2025-06-05 07:50:46] 2025-06-05 02:49:39,407 | INFO     | ..............................
[2025-06-05 07:50:46] 2025-06-05 02:49:39,563 | INFO     | 
[2025-06-05 07:50:46] 2025-06-05 02:49:39,564 | INFO     | job summary report
[2025-06-05 07:50:46] 2025-06-05 02:49:39,564 | INFO     | --------------------------------------------------
[2025-06-05 07:50:46] 2025-06-05 02:49:39,564 | INFO     | PanDA job id: 6679113741
[2025-06-05 07:50:46] 2025-06-05 02:49:39,564 | INFO     | task id: 45006595
[2025-06-05 07:50:46] 2025-06-05 02:49:39,564 | INFO     | errors: (none)
[2025-06-05 07:50:46] 2025-06-05 02:49:39,564 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 07:50:46] 2025-06-05 02:49:39,564 | INFO     | pilot state: finished 
[2025-06-05 07:50:46] 2025-06-05 02:49:39,565 | INFO     | transexitcode: 0
[2025-06-05 07:50:46] 2025-06-05 02:49:39,565 | INFO     | exeerrorcode: 0
[2025-06-05 07:50:46] 2025-06-05 02:49:39,565 | INFO     | exeerrordiag: 
[2025-06-05 07:50:46] 2025-06-05 02:49:39,565 | INFO     | exitcode: 0
[2025-06-05 07:50:46] 2025-06-05 02:49:39,565 | INFO     | exitmsg: OK
[2025-06-05 07:50:46] 2025-06-05 02:49:39,565 | INFO     | cpuconsumptiontime: 51112 s
[2025-06-05 07:50:46] 2025-06-05 02:49:39,565 | INFO     | nevents: 400
[2025-06-05 07:50:46] 2025-06-05 02:49:39,565 | INFO     | neventsw: 0
[2025-06-05 07:50:46] 2025-06-05 02:49:39,565 | INFO     | pid: 14075
[2025-06-05 07:50:46] 2025-06-05 02:49:39,565 | INFO     | pgrp: 14075
[2025-06-05 07:50:46] 2025-06-05 02:49:39,565 | INFO     | corecount: 8
[2025-06-05 07:50:46] 2025-06-05 02:49:39,566 | INFO     | event service: False
[2025-06-05 07:50:46] 2025-06-05 02:49:39,566 | INFO     | sizes: {0: 2396464, 1: 2397149, 2: 2397320, 12: 2397348, 18: 2397582, 23: 2397610, 13654: 2427430, 13655: 2427429, 13665: 2436426, 13667: 2436482, 13764: 2436652}
[2025-06-05 07:50:46] 2025-06-05 02:49:39,566 | INFO     | --------------------------------------------------
[2025-06-05 07:50:46] 2025-06-05 02:49:39,566 | INFO     | 
[2025-06-05 07:50:46] 2025-06-05 02:49:39,566 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-06-05 07:50:46] 2025-06-05 02:49:39,999 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 07:50:46] 2025-06-05 02:49:39,999 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 07:50:46] 2025-06-05 02:49:39,999 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 07:50:46] 2025-06-05 02:49:39,999 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 07:50:46] 2025-06-05 02:49:40,000 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 07:50:46] 2025-06-05 02:49:40,000 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 07:50:46] 2025-06-05 02:49:40,000 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 07:50:46] 2025-06-05 02:49:40,000 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 07:50:46] 2025-06-05 02:49:40,000 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 07:50:46] 2025-06-05 02:49:40,000 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 07:50:46] 2025-06-05 02:49:40,000 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 07:50:46] 2025-06-05 02:49:40,000 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 07:50:46] 2025-06-05 02:49:40,000 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 07:50:46] 2025-06-05 02:49:40,000 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 07:50:46] 2025-06-05 02:49:40,001 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 07:50:46] 2025-06-05 02:49:40,001 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 07:50:46] 2025-06-05 02:49:40,001 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 07:50:46] 2025-06-05 02:49:40,001 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 07:50:46] 2025-06-05 02:49:40,001 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 07:50:46] 2025-06-05 02:49:40,001 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 07:50:46] 2025-06-05 02:49:40,001 | INFO     | job 6679113741 has completed (purged errors)
[2025-06-05 07:50:46] 2025-06-05 02:49:40,001 | INFO     | overall cleanup function is called
[2025-06-05 07:50:46] 2025-06-05 02:49:41,010 | INFO     | --- collectZombieJob: --- 10, [14075]
[2025-06-05 07:50:46] 2025-06-05 02:49:41,011 | INFO     | zombie collector waiting for pid 14075
[2025-06-05 07:50:46] 2025-06-05 02:49:41,011 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 07:50:46] 2025-06-05 02:49:41,011 | INFO     | collected zombie processes
[2025-06-05 07:50:46] 2025-06-05 02:49:41,011 | INFO     | will attempt to kill all subprocesses of pid=14075
[2025-06-05 07:50:46] 2025-06-05 02:49:41,138 | INFO     | process IDs to be killed: [14075] (in reverse order)
[2025-06-05 07:50:46] 2025-06-05 02:49:42,149 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 07:50:46] 2025-06-05 02:49:42,150 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 07:50:46] 2025-06-05 02:49:42,153 | INFO     | did not find any defunct processes belonging to 14075
[2025-06-05 07:50:46] 2025-06-05 02:49:42,157 | INFO     | did not find any defunct processes belonging to 14075
[2025-06-05 07:50:46] 2025-06-05 02:49:42,157 | INFO     | ready for new job
[2025-06-05 07:50:46] 2025-06-05 02:49:42,157 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 07:50:46] 2025-06-05 02:49:42,160 | INFO     | **************************************
[2025-06-05 07:50:46] 2025-06-05 02:49:42,160 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 07:50:46] 2025-06-05 02:49:42,160 | INFO     | **************************************
[2025-06-05 07:50:46] 2025-06-05 02:49:42,160 | INFO     | 
[2025-06-05 07:50:46] 2025-06-05 02:49:42,161 | INFO     | pilot is running in a VM
[2025-06-05 07:50:46] 2025-06-05 02:49:42,161 | INFO     | architecture information:
[2025-06-05 07:50:46] 2025-06-05 02:49:42,165 | INFO     | executing command: cat /etc/os-release
[2025-06-05 07:50:46] 2025-06-05 02:49:42,328 | INFO     | cat /etc/os-release:
[2025-06-05 07:50:46] NAME="CentOS Linux"
[2025-06-05 07:50:46] VERSION="7 (Core)"
[2025-06-05 07:50:46] ID="centos"
[2025-06-05 07:50:46] ID_LIKE="rhel fedora"
[2025-06-05 07:50:46] VERSION_ID="7"
[2025-06-05 07:50:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 07:50:46] ANSI_COLOR="0;31"
[2025-06-05 07:50:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 07:50:46] HOME_URL="https://www.centos.org/"
[2025-06-05 07:50:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 07:50:46] 
[2025-06-05 07:50:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 07:50:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 07:50:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 07:50:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 07:50:46] 
[2025-06-05 07:50:46] 2025-06-05 02:49:42,328 | INFO     | **************************************
[2025-06-05 07:50:46] 2025-06-05 02:49:42,832 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-06-05 07:50:46] 2025-06-05 02:49:43,049 | INFO     | sufficient remaining disk space (497531486208 B)
[2025-06-05 07:50:46] 2025-06-05 02:49:43,050 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 07:50:46] 2025-06-05 02:49:43,050 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 07:50:46] 2025-06-05 02:49:43,050 | INFO     | update_server=False
[2025-06-05 07:50:46] 2025-06-05 02:49:43,050 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 07:50:46] 2025-06-05 02:49:43,051 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 07:50:46] 2025-06-05 02:49:43,051 | INFO     | aborting loop
[2025-06-05 07:50:46] 2025-06-05 02:49:43,358 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 07:50:46] 2025-06-05 02:49:43,930 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 07:50:46] 2025-06-05 02:49:43,930 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 07:50:46] 2025-06-05 02:49:43,930 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 07:50:46] 2025-06-05 02:49:44,005 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 07:50:46] 2025-06-05 02:49:44,033 | INFO     | all data control threads have been joined
[2025-06-05 07:50:46] 2025-06-05 02:49:44,057 | INFO     | [job] retrieve thread has finished
[2025-06-05 07:50:46] 2025-06-05 02:49:44,061 | INFO     | [job] job monitor thread has finished
[2025-06-05 07:50:46] 2025-06-05 02:49:44,447 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 07:50:46] 2025-06-05 02:49:44,506 | INFO     | [payload] validate_post thread has finished
[2025-06-05 07:50:46] 2025-06-05 02:49:44,512 | INFO     | all payload control threads have been joined
[2025-06-05 07:50:46] 2025-06-05 02:49:44,582 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 07:50:46] 2025-06-05 02:49:44,610 | INFO     | all job control threads have been joined
[2025-06-05 07:50:46] 2025-06-05 02:49:44,848 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 07:50:46] 2025-06-05 02:49:45,039 | INFO     | [data] control thread has finished
[2025-06-05 07:50:46] 2025-06-05 02:49:45,116 | INFO     | [job] validate thread has finished
[2025-06-05 07:50:46] 2025-06-05 02:49:45,224 | INFO     | [payload] failed_post thread has finished
[2025-06-05 07:50:46] 2025-06-05 02:49:45,244 | INFO     | [data] copytool_in thread has finished
[2025-06-05 07:50:46] 2025-06-05 02:49:45,266 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 07:50:46] 2025-06-05 02:49:45,267 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 07:50:46] 2025-06-05 02:49:45,519 | INFO     | [payload] control thread has finished
[2025-06-05 07:50:46] 2025-06-05 02:49:45,588 | INFO     | [job] queue monitor thread has finished
[2025-06-05 07:50:46] 2025-06-05 02:49:45,617 | INFO     | [job] control thread has finished
[2025-06-05 07:50:46] 2025-06-05 02:49:46,012 | INFO     | [data] copytool_out thread has finished
[2025-06-05 07:50:46] 2025-06-05 02:49:47,367 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 07:50:46] 2025-06-05 02:49:48,813 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139791058831168)>', '<ExcThread(monitor, started 139790615820032)>']
[2025-06-05 07:50:46] 2025-06-05 02:49:48,959 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 07:50:46] 2025-06-05 02:49:48,960 | INFO     | [monitor] control thread has ended
[2025-06-05 07:50:46] 2025-06-05 02:49:53,839 | INFO     | all workflow threads have been joined
[2025-06-05 07:50:46] 2025-06-05 02:49:53,839 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 07:50:46] 2025-06-05 02:49:53,839 | INFO     | traces error code: 0
[2025-06-05 07:50:46] 2025-06-05 02:49:53,839 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 07:50:46] 2025-06-05 02:49:54,204 [wrapper] ==== pilot stdout END ====
[2025-06-05 07:50:46] 2025-06-05 02:49:54,239 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 07:50:46] 2025-06-05 02:49:54,274 [wrapper] pilotpid: 5524
[2025-06-05 07:50:46] 2025-06-05 02:49:54,345 [wrapper] Pilot exit status: 0
[2025-06-05 07:50:46] 2025-06-05 02:49:54,626 [wrapper] pandaids: 6679113741
[2025-06-05 07:50:46] 2025-06-05 02:49:54,951 [wrapper] cleanup supervisor_pilot 27096 5525
[2025-06-05 07:50:46] 2025-06-05 02:49:55,006 [wrapper] Test setup, not cleaning
[2025-06-05 07:50:46] 2025-06-05 02:49:55,055 [wrapper] apfmon messages muted
[2025-06-05 07:50:46] 2025-06-05 02:49:55,108 [wrapper] ==== wrapper stdout END ====
[2025-06-05 07:50:46] 2025-06-05 02:49:55,169 [wrapper] ==== wrapper stderr END ====
[2025-06-05 07:50:46]  *** Error codes and diagnostics ***
[2025-06-05 07:50:46]     "exeErrorCode": 0,
[2025-06-05 07:50:46]     "exeErrorDiag": "",
[2025-06-05 07:50:46]     "pilotErrorCode": 0,
[2025-06-05 07:50:46]     "pilotErrorDiag": "",
[2025-06-05 07:50:46]  *** Listing of results directory ***
[2025-06-05 07:50:46] total 390208
[2025-06-05 07:50:46] -rw-r--r--. 1 boinc boinc    495897 Jun  4 10:46 pilot3.tar.gz
[2025-06-05 07:50:46] -rw-r--r--. 1 boinc boinc      5111 Jun  4 10:48 queuedata.json
[2025-06-05 07:50:46] -rwx------. 1 boinc boinc     37140 Jun  4 10:48 runpilot2-wrapper.sh
[2025-06-05 07:50:46] -rw-r--r--. 1 boinc boinc       100 Jun  5 00:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 07:50:46] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 00:59 run_atlas
[2025-06-05 07:50:46] -rw-r--r--. 1 boinc boinc       105 Jun  5 00:59 job.xml
[2025-06-05 07:50:46] -rw-r--r--. 1 boinc boinc      6390 Jun  5 00:59 init_data.xml
[2025-06-05 07:50:46] -rw-r--r--. 2 boinc boinc 213529536 Jun  5 00:59 EVNT.45006593._001171.pool.root.1
[2025-06-05 07:50:46] -rw-r--r--. 2 boinc boinc     15093 Jun  5 00:59 start_atlas.sh
[2025-06-05 07:50:46] drwxrwx--x. 2 boinc boinc        68 Jun  5 00:59 shared
[2025-06-05 07:50:46] -rw-r--r--. 2 boinc boinc    508882 Jun  5 00:59 input.tar.gz
[2025-06-05 07:50:46] -rw-r--r--. 1 boinc boinc         0 Jun  5 00:59 boinc_lockfile
[2025-06-05 07:50:46] -rw-r--r--. 1 boinc boinc      2525 Jun  5 00:59 pandaJob.out
[2025-06-05 07:50:46] -rw-------. 1 boinc boinc    987032 Jun  5 00:59 agis_schedconf.cvmfs.json
[2025-06-05 07:50:46] drwx------. 4 boinc boinc      4096 Jun  5 00:59 pilot3
[2025-06-05 07:50:46] -rw-------. 1 boinc boinc 179068585 Jun  5 04:46 HITS.45006595._055865.pool.root.1
[2025-06-05 07:50:46] -rw-r--r--. 1 boinc boinc       531 Jun  5 04:46 boinc_task_state.xml
[2025-06-05 07:50:46] -rw-------. 1 boinc boinc      1017 Jun  5 04:47 memory_monitor_summary.json
[2025-06-05 07:50:46] -rw-------. 1 boinc boinc   1598969 Jun  5 04:47 agis_ddmendpoints.agis.ALL.json
[2025-06-05 07:50:46] -rw-------. 1 boinc boinc    381907 Jun  5 04:47 log.45006595._055865.job.log.tgz.1
[2025-06-05 07:50:46] -rw-------. 1 boinc boinc        95 Jun  5 04:49 pilot_heartbeat.json
[2025-06-05 07:50:46] -rw-------. 1 boinc boinc      7682 Jun  5 04:49 heartbeat.json
[2025-06-05 07:50:46] -rw-------. 1 boinc boinc      4416 Jun  5 04:49 pilotlog.txt
[2025-06-05 07:50:46] -rw-------. 1 boinc boinc   1196167 Jun  5 04:49 log.45006595._055865.job.log.1
[2025-06-05 07:50:46] -rw-------. 1 boinc boinc       357 Jun  5 04:49 output.list
[2025-06-05 07:50:46] -rw-r--r--. 1 boinc boinc       620 Jun  5 04:49 runtime_log
[2025-06-05 07:50:46] -rw-------. 1 boinc boinc   1597440 Jun  5 04:49 result.tar.gz
[2025-06-05 07:50:46] -rw-r--r--. 1 boinc boinc      8659 Jun  5 04:49 runtime_log.err
[2025-06-05 07:50:46] -rw-------. 1 boinc boinc       657 Jun  5 04:49 PaRNDm3yyg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZpnKDmpPt4Ym.diag
[2025-06-05 07:50:46] -rw-r--r--. 1 boinc boinc      8192 Jun  5 07:50 boinc_mmap_file
[2025-06-05 07:50:46] -rw-r--r--. 1 boinc boinc        28 Jun  5 07:50 wrapper_checkpoint.txt
[2025-06-05 07:50:46] -rw-r--r--. 1 boinc boinc     20537 Jun  5 07:50 stderr.txt
[2025-06-05 07:50:46] HITS file was successfully produced:
[2025-06-05 07:50:46] -rw-------. 1 boinc boinc 179068585 Jun  5 04:46 shared/HITS.pool.root.1
[2025-06-05 07:50:46]  *** Contents of shared directory: ***
[2025-06-05 07:50:46] total 385476
[2025-06-05 07:50:46] -rw-r--r--. 2 boinc boinc 213529536 Jun  5 00:59 ATLAS.root_0
[2025-06-05 07:50:46] -rw-r--r--. 2 boinc boinc     15093 Jun  5 00:59 start_atlas.sh
[2025-06-05 07:50:46] -rw-r--r--. 2 boinc boinc    508882 Jun  5 00:59 input.tar.gz
[2025-06-05 07:50:46] -rw-------. 1 boinc boinc 179068585 Jun  5 04:46 HITS.pool.root.1
[2025-06-05 07:50:46] -rw-------. 1 boinc boinc   1597440 Jun  5 04:49 result.tar.gz
07:50:47 (1839): run_atlas exited; CPU time 51288.522240
07:50:47 (1839): called boinc_finish(0)

</stderr_txt>
]]>

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