Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:40:41 (2437696): wrapper (7.7.26015): starting
03:40:41 (2437696): wrapper: running run_atlas (--nthreads 4)
[2025-06-06 03:40:41] Arguments: --nthreads 4
[2025-06-06 03:40:41] Threads: 4
[2025-06-06 03:40:41] Checking for CVMFS
[2025-06-06 03:40:41] No cvmfs_config command found, will try listing directly
[2025-06-06 03:40:41] CVMFS is ok
[2025-06-06 03:40:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 03:40:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 03:40:41] Further information can be found at the LHC@home message board.
[2025-06-06 03:40:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 03:40:41] Checking for apptainer binary...
[2025-06-06 03:40:41] which: no apptainer in ((null))
[2025-06-06 03:40:41] apptainer is not installed, using version from CVMFS
[2025-06-06 03:40:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 03:40:42] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot112/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2025-06-06 03:40:42] apptainer works
[2025-06-06 03:40:42] Set ATHENA_PROC_NUMBER=4
[2025-06-06 03:40:42] Set ATHENA_CORE_NUMBER=4
[2025-06-06 03:40:42] Starting ATLAS job with PandaID=6678869608
[2025-06-06 03:40:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot112/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 05:17:16]  *** The last 200 lines of the pilot log: ***
[2025-06-06 05:17:16]  guid=ed4b0009-c9e5-47da-94da-207f4c60b75d
[2025-06-06 05:17:16]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-06 05:17:16]  is_altstaged=None
[2025-06-06 05:17:16]  is_tar=False
[2025-06-06 05:17:16]  lfn=log.45006595._055657.job.log.tgz.1
[2025-06-06 05:17:16]  mtime=0
[2025-06-06 05:17:16]  protocol_id=None
[2025-06-06 05:17:16]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 05:17:16]  replicas=None
[2025-06-06 05:17:16]  scope=mc23_13p6TeV
[2025-06-06 05:17:16]  status=None
[2025-06-06 05:17:16]  status_code=0
[2025-06-06 05:17:16]  storage_token=
[2025-06-06 05:17:16]  surl=/scratch/boinc/var/slot112/slots/0/PanDA_Pilot-6678869608/log.45006595._055657.job.log.tgz.1
[2025-06-06 05:17:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b3/d2/log.45006595._055657.job.log.tgz.1
[2025-06-06 05:17:16]  workdir=None
[2025-06-06 05:17:16] ]
[2025-06-06 05:17:16] 2025-06-06 03:16:50,714 | INFO     | transferring file log.45006595._055657.job.log.tgz.1 from /scratch/boinc/var/slot112/slots/0/PanDA_Pilot-6678869608/log.45006595._055657.job.log.tgz.1 to /scratch/
[2025-06-06 05:17:16] 2025-06-06 03:16:50,714 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot112/slots/0/PanDA_Pilot-6678869608/log.45006595._055657.job.log.tgz.1 /scratch/boinc/var/slot112/slots/0/
[2025-06-06 05:17:16] 2025-06-06 03:16:50,742 | INFO     | adding to output.list: log.45006595._055657.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b3/d2/log.45006595._055657.job.log.tg
[2025-06-06 05:17:16] 2025-06-06 03:16:50,743 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 05:17:16] 2025-06-06 03:16:50,743 | INFO     | summary of transferred files:
[2025-06-06 05:17:16] 2025-06-06 03:16:50,743 | INFO     |  -- lfn=log.45006595._055657.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 05:17:16] 2025-06-06 03:16:50,744 | INFO     | stage-out finished correctly
[2025-06-06 05:17:16] 2025-06-06 03:16:51,641 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 05:17:16] 2025-06-06 03:16:52,144 | INFO     | monitor loop #410: job 0:6678869608 is in state 'finished'
[2025-06-06 05:17:16] 2025-06-06 03:16:52,144 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 05:17:16] 2025-06-06 03:16:52,994 | INFO     | job 6678869608 has state=finished
[2025-06-06 05:17:16] 2025-06-06 03:16:52,994 | INFO     | preparing for final server update for job 6678869608 in state='finished'
[2025-06-06 05:17:16] 2025-06-06 03:16:52,995 | INFO     | this job has now completed (state=finished)
[2025-06-06 05:17:16] 2025-06-06 03:16:52,995 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 05:17:16] 2025-06-06 03:16:52,995 | INFO     | log transfer has been attempted: DONE
[2025-06-06 05:17:16] 2025-06-06 03:16:52,995 | INFO     | job 6678869608 has finished - writing final server update
[2025-06-06 05:17:16] 2025-06-06 03:16:52,996 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_8939/.job.ad'
[2025-06-06 05:17:16] 2025-06-06 03:16:52,996 | INFO     | total number of processed events: 400 (read)
[2025-06-06 05:17:16] 2025-06-06 03:16:53,003 | INFO     | executing command: lscpu
[2025-06-06 05:17:16] 2025-06-06 03:16:53,105 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 05:17:16] 2025-06-06 03:16:54,649 | INFO     | monitor loop #411: job 0:6678869608 is in state 'finished'
[2025-06-06 05:17:16] 2025-06-06 03:16:54,650 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 05:17:16] 2025-06-06 03:16:57,153 | INFO     | monitor loop #412: job 0:6678869608 is in state 'finished'
[2025-06-06 05:17:16] 2025-06-06 03:16:57,153 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 05:17:16] 2025-06-06 03:16:59,001 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-06 05:17:16] 2025-06-06 03:16:59,002 | INFO     | using path: /scratch/boinc/var/slot112/slots/0/PanDA_Pilot-6678869608/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 05:17:16] 2025-06-06 03:16:59,002 | INFO     | extracted standard info from prmon json
[2025-06-06 05:17:16] 2025-06-06 03:16:59,002 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 05:17:16] 2025-06-06 03:16:59,003 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 05:17:16] 2025-06-06 03:16:59,003 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 05:17:16] 2025-06-06 03:16:59,003 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 05:17:16] 2025-06-06 03:16:59,006 | INFO     | fitting pss+swap vs Time
[2025-06-06 05:17:16] 2025-06-06 03:16:59,006 | INFO     | sum of square deviations: 204163828.0
[2025-06-06 05:17:16] 2025-06-06 03:16:59,006 | INFO     | sum of deviations: -7519597551.000002
[2025-06-06 05:17:16] 2025-06-06 03:16:59,006 | INFO     | mean x: 1749177015.0
[2025-06-06 05:17:16] 2025-06-06 03:16:59,006 | INFO     | mean y: 2385409.436781609
[2025-06-06 05:17:16] 2025-06-06 03:16:59,007 | INFO     | -- intersect: 64426663339.11732
[2025-06-06 05:17:16] 2025-06-06 03:16:59,007 | INFO     | intersect: 64426663339.11732
[2025-06-06 05:17:16] 2025-06-06 03:16:59,007 | INFO     | chi2: 0.04087573634073412
[2025-06-06 05:17:16] 2025-06-06 03:16:59,007 | INFO     | -- intersect: 64426663339.11732
[2025-06-06 05:17:16] 2025-06-06 03:16:59,007 | INFO     | current memory leak: -36.83 B/s (using 87 data points, chi2=0.04)
[2025-06-06 05:17:16] 2025-06-06 03:16:59,007 | INFO     | ..............................
[2025-06-06 05:17:16] 2025-06-06 03:16:59,007 | INFO     | . Timing measurements:
[2025-06-06 05:17:16] 2025-06-06 03:16:59,008 | INFO     | . get job = 0 s
[2025-06-06 05:17:16] 2025-06-06 03:16:59,008 | INFO     | . initial setup = 1 s
[2025-06-06 05:17:16] 2025-06-06 03:16:59,008 | INFO     | . payload setup = 9 s
[2025-06-06 05:17:16] 2025-06-06 03:16:59,008 | INFO     | . stage-in = 0 s
[2025-06-06 05:17:16] 2025-06-06 03:16:59,008 | INFO     | . payload execution = 5724 s
[2025-06-06 05:17:16] 2025-06-06 03:16:59,008 | INFO     | . stage-out = 0 s
[2025-06-06 05:17:16] 2025-06-06 03:16:59,008 | INFO     | . log creation = 0 s
[2025-06-06 05:17:16] 2025-06-06 03:16:59,008 | INFO     | ..............................
[2025-06-06 05:17:16] 2025-06-06 03:16:59,099 | INFO     | 
[2025-06-06 05:17:16] 2025-06-06 03:16:59,100 | INFO     | job summary report
[2025-06-06 05:17:16] 2025-06-06 03:16:59,100 | INFO     | --------------------------------------------------
[2025-06-06 05:17:16] 2025-06-06 03:16:59,100 | INFO     | PanDA job id: 6678869608
[2025-06-06 05:17:16] 2025-06-06 03:16:59,100 | INFO     | task id: 45006595
[2025-06-06 05:17:16] 2025-06-06 03:16:59,100 | INFO     | errors: (none)
[2025-06-06 05:17:16] 2025-06-06 03:16:59,100 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 05:17:16] 2025-06-06 03:16:59,100 | INFO     | pilot state: finished 
[2025-06-06 05:17:16] 2025-06-06 03:16:59,100 | INFO     | transexitcode: 0
[2025-06-06 05:17:16] 2025-06-06 03:16:59,100 | INFO     | exeerrorcode: 0
[2025-06-06 05:17:16] 2025-06-06 03:16:59,100 | INFO     | exeerrordiag: 
[2025-06-06 05:17:16] 2025-06-06 03:16:59,100 | INFO     | exitcode: 0
[2025-06-06 05:17:16] 2025-06-06 03:16:59,101 | INFO     | exitmsg: OK
[2025-06-06 05:17:16] 2025-06-06 03:16:59,101 | INFO     | cpuconsumptiontime: 21642 s
[2025-06-06 05:17:16] 2025-06-06 03:16:59,101 | INFO     | nevents: 400
[2025-06-06 05:17:16] 2025-06-06 03:16:59,101 | INFO     | neventsw: 0
[2025-06-06 05:17:16] 2025-06-06 03:16:59,101 | INFO     | pid: 2451383
[2025-06-06 05:17:16] 2025-06-06 03:16:59,101 | INFO     | pgrp: 2451383
[2025-06-06 05:17:16] 2025-06-06 03:16:59,101 | INFO     | corecount: 4
[2025-06-06 05:17:16] 2025-06-06 03:16:59,101 | INFO     | event service: False
[2025-06-06 05:17:16] 2025-06-06 03:16:59,101 | INFO     | sizes: {0: 2397297, 6: 2397503, 11: 2397531, 5737: 2424124, 5738: 2424123, 5739: 2433144, 5740: 2433328, 5747: 2433498}
[2025-06-06 05:17:16] 2025-06-06 03:16:59,101 | INFO     | --------------------------------------------------
[2025-06-06 05:17:16] 2025-06-06 03:16:59,101 | INFO     | 
[2025-06-06 05:17:16] 2025-06-06 03:16:59,102 | INFO     | executing command: ls -lF /scratch/boinc/var/slot112/slots/0
[2025-06-06 05:17:16] 2025-06-06 03:16:59,130 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 05:17:16] 2025-06-06 03:16:59,131 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 05:17:16] 2025-06-06 03:16:59,131 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 05:17:16] 2025-06-06 03:16:59,131 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 05:17:16] 2025-06-06 03:16:59,131 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 05:17:16] 2025-06-06 03:16:59,131 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 05:17:16] 2025-06-06 03:16:59,131 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 05:17:16] 2025-06-06 03:16:59,131 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 05:17:16] 2025-06-06 03:16:59,131 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 05:17:16] 2025-06-06 03:16:59,131 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 05:17:16] 2025-06-06 03:16:59,132 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 05:17:16] 2025-06-06 03:16:59,132 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 05:17:16] 2025-06-06 03:16:59,132 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 05:17:16] 2025-06-06 03:16:59,132 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 05:17:16] 2025-06-06 03:16:59,132 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 05:17:16] 2025-06-06 03:16:59,132 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 05:17:16] 2025-06-06 03:16:59,132 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 05:17:16] 2025-06-06 03:16:59,132 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 05:17:16] 2025-06-06 03:16:59,132 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 05:17:16] 2025-06-06 03:16:59,132 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 05:17:16] 2025-06-06 03:16:59,132 | INFO     | job 6678869608 has completed (purged errors)
[2025-06-06 05:17:16] 2025-06-06 03:16:59,132 | INFO     | overall cleanup function is called
[2025-06-06 05:17:16] 2025-06-06 03:17:00,141 | INFO     | --- collectZombieJob: --- 10, [2451383]
[2025-06-06 05:17:16] 2025-06-06 03:17:00,141 | INFO     | zombie collector waiting for pid 2451383
[2025-06-06 05:17:16] 2025-06-06 03:17:00,141 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 05:17:16] 2025-06-06 03:17:00,142 | INFO     | collected zombie processes
[2025-06-06 05:17:16] 2025-06-06 03:17:00,142 | INFO     | will attempt to kill all subprocesses of pid=2451383
[2025-06-06 05:17:16] 2025-06-06 03:17:00,684 | INFO     | process IDs to be killed: [2451383] (in reverse order)
[2025-06-06 05:17:16] 2025-06-06 03:17:00,878 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 05:17:16] 2025-06-06 03:17:00,879 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 05:17:16] 2025-06-06 03:17:00,901 | INFO     | did not find any defunct processes belonging to 2451383
[2025-06-06 05:17:16] 2025-06-06 03:17:00,920 | INFO     | did not find any defunct processes belonging to 2451383
[2025-06-06 05:17:16] 2025-06-06 03:17:00,920 | INFO     | ready for new job
[2025-06-06 05:17:16] 2025-06-06 03:17:00,920 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 05:17:16] 2025-06-06 03:17:00,922 | INFO     | **************************************
[2025-06-06 05:17:16] 2025-06-06 03:17:00,922 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 05:17:16] 2025-06-06 03:17:00,922 | INFO     | **************************************
[2025-06-06 05:17:16] 2025-06-06 03:17:00,922 | INFO     | 
[2025-06-06 05:17:16] 2025-06-06 03:17:00,930 | INFO     | architecture information:
[2025-06-06 05:17:16] 2025-06-06 03:17:00,930 | INFO     | executing command: cat /etc/os-release
[2025-06-06 05:17:16] 2025-06-06 03:17:00,953 | INFO     | cat /etc/os-release:
[2025-06-06 05:17:16] NAME="CentOS Linux"
[2025-06-06 05:17:16] VERSION="7 (Core)"
[2025-06-06 05:17:16] ID="centos"
[2025-06-06 05:17:16] ID_LIKE="rhel fedora"
[2025-06-06 05:17:16] VERSION_ID="7"
[2025-06-06 05:17:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 05:17:16] ANSI_COLOR="0;31"
[2025-06-06 05:17:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 05:17:16] HOME_URL="https://www.centos.org/"
[2025-06-06 05:17:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 05:17:16] 
[2025-06-06 05:17:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 05:17:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 05:17:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 05:17:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 05:17:16] 
[2025-06-06 05:17:16] 2025-06-06 03:17:00,953 | INFO     | **************************************
[2025-06-06 05:17:16] 2025-06-06 03:17:01,456 | INFO     | executing command: df -mP /scratch/boinc/var/slot112/slots/0
[2025-06-06 05:17:16] 2025-06-06 03:17:01,483 | INFO     | sufficient remaining disk space (3289124962304 B)
[2025-06-06 05:17:16] 2025-06-06 03:17:01,484 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 05:17:16] 2025-06-06 03:17:01,484 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 05:17:16] 2025-06-06 03:17:01,484 | INFO     | update_server=False
[2025-06-06 05:17:16] 2025-06-06 03:17:01,484 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 05:17:16] 2025-06-06 03:17:01,485 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 05:17:16] 2025-06-06 03:17:01,485 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 05:17:16] 2025-06-06 03:17:01,485 | INFO     | aborting loop
[2025-06-06 05:17:16] 2025-06-06 03:17:02,052 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 05:17:16] 2025-06-06 03:17:02,052 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 05:17:16] 2025-06-06 03:17:02,052 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 05:17:16] 2025-06-06 03:17:02,056 | INFO     | all data control threads have been joined
[2025-06-06 05:17:16] 2025-06-06 03:17:02,235 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 05:17:16] 2025-06-06 03:17:02,286 | INFO     | all payload control threads have been joined
[2025-06-06 05:17:16] 2025-06-06 03:17:02,489 | INFO     | [job] retrieve thread has finished
[2025-06-06 05:17:16] 2025-06-06 03:17:02,491 | INFO     | [job] job monitor thread has finished
[2025-06-06 05:17:16] 2025-06-06 03:17:02,886 | INFO     | [job] validate thread has finished
[2025-06-06 05:17:16] 2025-06-06 03:17:03,004 | INFO     | all job control threads have been joined
[2025-06-06 05:17:16] 2025-06-06 03:17:03,061 | INFO     | [data] control thread has finished
[2025-06-06 05:17:16] 2025-06-06 03:17:03,164 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 05:17:16] 2025-06-06 03:17:03,251 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 05:17:16] 2025-06-06 03:17:03,292 | INFO     | [payload] control thread has finished
[2025-06-06 05:17:16] 2025-06-06 03:17:03,293 | INFO     | [payload] failed_post thread has finished
[2025-06-06 05:17:16] 2025-06-06 03:17:03,410 | INFO     | [data] copytool_in thread has finished
[2025-06-06 05:17:16] 2025-06-06 03:17:03,450 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 05:17:16] 2025-06-06 03:17:03,491 | INFO     | [data] copytool_out thread has finished
[2025-06-06 05:17:16] 2025-06-06 03:17:03,783 | INFO     | [payload] validate_post thread has finished
[2025-06-06 05:17:16] 2025-06-06 03:17:03,810 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 05:17:16] 2025-06-06 03:17:04,010 | INFO     | [job] control thread has finished
[2025-06-06 05:17:16] 2025-06-06 03:17:04,110 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 05:17:16] 2025-06-06 03:17:05,116 | INFO     | [job] queue monitor thread has finished
[2025-06-06 05:17:16] 2025-06-06 03:17:06,242 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 05:17:16] 2025-06-06 03:17:07,948 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22716727486272)>', '<ExcThread(monitor, started 22715880699648)>']
[2025-06-06 05:17:16] 2025-06-06 03:17:08,082 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 05:17:16] 2025-06-06 03:17:08,082 | INFO     | [monitor] control thread has ended
[2025-06-06 05:17:16] 2025-06-06 03:17:12,973 | INFO     | all workflow threads have been joined
[2025-06-06 05:17:16] 2025-06-06 03:17:12,973 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 05:17:16] 2025-06-06 03:17:12,973 | INFO     | traces error code: 0
[2025-06-06 05:17:16] 2025-06-06 03:17:12,973 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 05:17:16] 2025-06-06 03:17:13,113 [wrapper] ==== pilot stdout END ====
[2025-06-06 05:17:16] 2025-06-06 03:17:13,116 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 05:17:16] 2025-06-06 03:17:13,118 [wrapper] pilotpid: 2443644
[2025-06-06 05:17:16] 2025-06-06 03:17:13,121 [wrapper] Pilot exit status: 0
[2025-06-06 05:17:16] 2025-06-06 03:17:13,133 [wrapper] pandaids: 6678869608
[2025-06-06 05:17:16] 2025-06-06 03:17:13,242 [wrapper] cleanup supervisor_pilot 2630496 2443646
[2025-06-06 05:17:16] 2025-06-06 03:17:13,245 [wrapper] Test setup, not cleaning
[2025-06-06 05:17:16] 2025-06-06 03:17:13,247 [wrapper] apfmon messages muted
[2025-06-06 05:17:16] 2025-06-06 03:17:13,250 [wrapper] ==== wrapper stdout END ====
[2025-06-06 05:17:16] 2025-06-06 03:17:13,252 [wrapper] ==== wrapper stderr END ====
[2025-06-06 05:17:16]  *** Error codes and diagnostics ***
[2025-06-06 05:17:16]     "exeErrorCode": 0,
[2025-06-06 05:17:16]     "exeErrorDiag": "",
[2025-06-06 05:17:16]     "pilotErrorCode": 0,
[2025-06-06 05:17:16]     "pilotErrorDiag": "",
[2025-06-06 05:17:16]  *** Listing of results directory ***
[2025-06-06 05:17:16] total 390180
[2025-06-06 05:17:16] -rw-r--r-- 1 boinc boinc    495897 Jun  4 10:17 pilot3.tar.gz
[2025-06-06 05:17:16] -rw-r--r-- 1 boinc boinc      5111 Jun  4 10:26 queuedata.json
[2025-06-06 05:17:16] -rwx------ 1 boinc boinc     37140 Jun  4 10:27 runpilot2-wrapper.sh
[2025-06-06 05:17:16] -rw-r--r-- 1 boinc boinc       100 Jun  6 03:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 05:17:16] -rwxr-xr-x 1 boinc boinc      7986 Jun  6 03:40 run_atlas
[2025-06-06 05:17:16] -rw-r--r-- 1 boinc boinc       105 Jun  6 03:40 job.xml
[2025-06-06 05:17:16] -rw-r--r-- 1 boinc boinc      6688 Jun  6 03:40 init_data.xml
[2025-06-06 05:17:16] -rw-r--r-- 2 boinc boinc 216555804 Jun  6 03:40 EVNT.45006593._000265.pool.root.1
[2025-06-06 05:17:16] -rw-r--r-- 2 boinc boinc     15093 Jun  6 03:40 start_atlas.sh
[2025-06-06 05:17:16] drwxrwx--x 2 boinc boinc      4096 Jun  6 03:40 shared
[2025-06-06 05:17:16] -rw-r--r-- 2 boinc boinc    508875 Jun  6 03:40 input.tar.gz
[2025-06-06 05:17:16] -rw-r--r-- 1 boinc boinc         0 Jun  6 03:40 boinc_lockfile
[2025-06-06 05:17:16] -rw-r--r-- 1 boinc boinc      2521 Jun  6 03:40 pandaJob.out
[2025-06-06 05:17:16] -rw------- 1 boinc boinc    987721 Jun  6 03:40 agis_schedconf.cvmfs.json
[2025-06-06 05:17:16] -rw------- 1 boinc boinc   1598969 Jun  6 03:40 agis_ddmendpoints.agis.ALL.json
[2025-06-06 05:17:16] drwx------ 4 boinc boinc      4096 Jun  6 03:40 pilot3
[2025-06-06 05:17:16] -rw------- 1 boinc boinc        95 Jun  6 05:16 pilot_heartbeat.json
[2025-06-06 05:17:16] -rw------- 1 boinc boinc 177565241 Jun  6 05:16 HITS.45006595._055657.pool.root.1
[2025-06-06 05:17:16] -rw-r--r-- 1 boinc boinc       528 Jun  6 05:16 boinc_task_state.xml
[2025-06-06 05:17:16] -rw------- 1 boinc boinc      1028 Jun  6 05:16 memory_monitor_summary.json
[2025-06-06 05:17:16] -rw------- 1 boinc boinc    243408 Jun  6 05:16 log.45006595._055657.job.log.tgz.1
[2025-06-06 05:17:16] -rw------- 1 boinc boinc      7701 Jun  6 05:16 heartbeat.json
[2025-06-06 05:17:16] -rw-r--r-- 1 boinc boinc      8192 Jun  6 05:17 boinc_mmap_file
[2025-06-06 05:17:16] -rw-r--r-- 1 boinc boinc        26 Jun  6 05:17 wrapper_checkpoint.txt
[2025-06-06 05:17:16] -rw------- 1 boinc boinc      4365 Jun  6 05:17 pilotlog.txt
[2025-06-06 05:17:16] -rw------- 1 boinc boinc    549369 Jun  6 05:17 log.45006595._055657.job.log.1
[2025-06-06 05:17:16] -rw------- 1 boinc boinc       357 Jun  6 05:17 output.list
[2025-06-06 05:17:16] -rw-r--r-- 1 boinc boinc       620 Jun  6 05:17 runtime_log
[2025-06-06 05:17:16] -rw------- 1 boinc boinc    808960 Jun  6 05:17 result.tar.gz
[2025-06-06 05:17:16] -rw-r--r-- 1 boinc boinc      9040 Jun  6 05:17 runtime_log.err
[2025-06-06 05:17:16] -rw------- 1 boinc boinc       662 Jun  6 05:17 mDZKDmVeyg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgmnKDmO0FS8n.diag
[2025-06-06 05:17:16] -rw-r--r-- 1 boinc boinc     21181 Jun  6 05:17 stderr.txt
[2025-06-06 05:17:16] HITS file was successfully produced:
[2025-06-06 05:17:16] -rw------- 1 boinc boinc 177565241 Jun  6 05:16 shared/HITS.pool.root.1
[2025-06-06 05:17:16]  *** Contents of shared directory: ***
[2025-06-06 05:17:16] total 386204
[2025-06-06 05:17:16] -rw-r--r-- 2 boinc boinc 216555804 Jun  6 03:40 ATLAS.root_0
[2025-06-06 05:17:16] -rw-r--r-- 2 boinc boinc     15093 Jun  6 03:40 start_atlas.sh
[2025-06-06 05:17:16] -rw-r--r-- 2 boinc boinc    508875 Jun  6 03:40 input.tar.gz
[2025-06-06 05:17:16] -rw------- 1 boinc boinc 177565241 Jun  6 05:16 HITS.pool.root.1
[2025-06-06 05:17:16] -rw------- 1 boinc boinc    808960 Jun  6 05:17 result.tar.gz
05:17:18 (2437696): run_atlas exited; CPU time 21910.953339
05:17:18 (2437696): called boinc_finish(0)

</stderr_txt>
]]>

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