Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:51:09 (299879): wrapper (7.7.26015): starting
08:51:09 (299879): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 08:51:09] Arguments: --nthreads 8
[2025-06-04 08:51:09] Threads: 8
[2025-06-04 08:51:09] Checking for CVMFS
[2025-06-04 08:51:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 08:51:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 08:51:09] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 08:51:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 08:51:09] 2.11.2.0 7041 28805 214856 146780 2 254 17714447 18432000 12557 130560 0 119071488 99.594 95168507 30976 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 08:51:09] CVMFS is ok
[2025-06-04 08:51:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 08:51:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 08:51:09] Further information can be found at the LHC@home message board.
[2025-06-04 08:51:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 08:51:09] Checking for apptainer binary...
[2025-06-04 08:51:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 08:51:09] Running /usr/bin/apptainer --version
[2025-06-04 08:51:09] apptainer version 1.3.2-1.el7
[2025-06-04 08:51:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 08:51:10] c-211-33-2.aglt2.org
[2025-06-04 08:51:10] apptainer works
[2025-06-04 08:51:10] Set ATHENA_PROC_NUMBER=8
[2025-06-04 08:51:10] Set ATHENA_CORE_NUMBER=8
[2025-06-04 08:51:10] Starting ATLAS job with PandaID=6679248118
[2025-06-04 08:51:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 10:17:23]  *** The last 200 lines of the pilot log: ***
[2025-06-04 10:17:23]  guid=7030d7b0-0d7c-44db-8d0c-ea746f60891f
[2025-06-04 10:17:23]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 10:17:23]  is_altstaged=None
[2025-06-04 10:17:23]  is_tar=False
[2025-06-04 10:17:23]  lfn=log.45006595._056055.job.log.tgz.1
[2025-06-04 10:17:23]  mtime=0
[2025-06-04 10:17:23]  protocol_id=None
[2025-06-04 10:17:23]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 10:17:23]  replicas=None
[2025-06-04 10:17:23]  scope=mc23_13p6TeV
[2025-06-04 10:17:23]  status=None
[2025-06-04 10:17:23]  status_code=0
[2025-06-04 10:17:23]  storage_token=
[2025-06-04 10:17:23]  surl=/tmp/boinchome/slots/5/PanDA_Pilot-6679248118/log.45006595._056055.job.log.tgz.1
[2025-06-04 10:17:23]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/27/3e/log.45006595._056055.job.log.tgz.1
[2025-06-04 10:17:23]  workdir=None
[2025-06-04 10:17:23] ]
[2025-06-04 10:17:23] 2025-06-04 14:16:57,342 | INFO     | transferring file log.45006595._056055.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6679248118/log.45006595._056055.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 10:17:23] 2025-06-04 14:16:57,342 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6679248118/log.45006595._056055.job.log.tgz.1 /tmp/boinchome/slots/5/log.45006595._056055.job
[2025-06-04 10:17:23] 2025-06-04 14:16:57,361 | INFO     | adding to output.list: log.45006595._056055.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/27/3e/log.45006595._056055.job.log.tg
[2025-06-04 10:17:23] 2025-06-04 14:16:57,361 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 10:17:23] 2025-06-04 14:16:57,361 | INFO     | summary of transferred files:
[2025-06-04 10:17:23] 2025-06-04 14:16:57,361 | INFO     |  -- lfn=log.45006595._056055.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 10:17:23] 2025-06-04 14:16:57,362 | INFO     | stage-out finished correctly
[2025-06-04 10:17:23] 2025-06-04 14:16:58,293 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 10:17:23] 2025-06-04 14:16:59,570 | INFO     | job 6679248118 has state=finished
[2025-06-04 10:17:23] 2025-06-04 14:16:59,570 | INFO     | preparing for final server update for job 6679248118 in state='finished'
[2025-06-04 10:17:23] 2025-06-04 14:16:59,570 | INFO     | this job has now completed (state=finished)
[2025-06-04 10:17:23] 2025-06-04 14:16:59,570 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 10:17:23] 2025-06-04 14:16:59,570 | INFO     | log transfer has been attempted: DONE
[2025-06-04 10:17:23] 2025-06-04 14:16:59,570 | INFO     | job 6679248118 has finished - writing final server update
[2025-06-04 10:17:23] 2025-06-04 14:16:59,571 | INFO     | total number of processed events: 400 (read)
[2025-06-04 10:17:23] 2025-06-04 14:16:59,574 | INFO     | executing command: lscpu
[2025-06-04 10:17:23] 2025-06-04 14:16:59,633 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 10:17:23] 2025-06-04 14:17:00,471 | WARNING  | process 309963 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 10:17:23] 2025-06-04 14:17:00,472 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6679248118/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 10:17:23] 2025-06-04 14:17:00,764 | INFO     | number of running child processes to parent process 309963: 1
[2025-06-04 10:17:23] 2025-06-04 14:17:00,764 | INFO     | maximum number of monitored processes: 6
[2025-06-04 10:17:23] 2025-06-04 14:17:03,266 | INFO     | monitor loop #384: job 0:6679248118 is in state 'finished'
[2025-06-04 10:17:23] 2025-06-04 14:17:03,267 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 10:17:23] 2025-06-04 14:17:03,885 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 10:17:23] 2025-06-04 14:17:03,885 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6679248118/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 10:17:23] 2025-06-04 14:17:03,885 | INFO     | extracted standard info from prmon json
[2025-06-04 10:17:23] 2025-06-04 14:17:03,886 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 10:17:23] 2025-06-04 14:17:03,886 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 10:17:23] 2025-06-04 14:17:03,886 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 10:17:23] 2025-06-04 14:17:03,886 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 10:17:23] 2025-06-04 14:17:03,887 | INFO     | fitting pss+swap vs Time
[2025-06-04 10:17:23] 2025-06-04 14:17:03,887 | INFO     | sum of square deviations: 141539398.0
[2025-06-04 10:17:23] 2025-06-04 14:17:03,887 | INFO     | sum of deviations: -1063030042.0
[2025-06-04 10:17:23] 2025-06-04 14:17:03,888 | INFO     | mean x: 1749044137.0
[2025-06-04 10:17:23] 2025-06-04 14:17:03,888 | INFO     | mean y: 2488179.4285714286
[2025-06-04 10:17:23] 2025-06-04 14:17:03,888 | INFO     | -- intersect: 13138664316.160225
[2025-06-04 10:17:23] 2025-06-04 14:17:03,888 | INFO     | intersect: 13138664316.160225
[2025-06-04 10:17:23] 2025-06-04 14:17:03,888 | INFO     | chi2: 0.0028701562735736433
[2025-06-04 10:17:23] 2025-06-04 14:17:03,888 | INFO     | -- intersect: 13138664316.160225
[2025-06-04 10:17:23] 2025-06-04 14:17:03,888 | INFO     | current memory leak: -7.51 B/s (using 77 data points, chi2=0.00)
[2025-06-04 10:17:23] 2025-06-04 14:17:03,888 | INFO     | ..............................
[2025-06-04 10:17:23] 2025-06-04 14:17:03,888 | INFO     | . Timing measurements:
[2025-06-04 10:17:23] 2025-06-04 14:17:03,888 | INFO     | . get job = 0 s
[2025-06-04 10:17:23] 2025-06-04 14:17:03,888 | INFO     | . initial setup = 2 s
[2025-06-04 10:17:23] 2025-06-04 14:17:03,888 | INFO     | . payload setup = 8 s
[2025-06-04 10:17:23] 2025-06-04 14:17:03,888 | INFO     | . stage-in = 0 s
[2025-06-04 10:17:23] 2025-06-04 14:17:03,889 | INFO     | . payload execution = 5106 s
[2025-06-04 10:17:23] 2025-06-04 14:17:03,889 | INFO     | . stage-out = 0 s
[2025-06-04 10:17:23] 2025-06-04 14:17:03,889 | INFO     | . log creation = 0 s
[2025-06-04 10:17:23] 2025-06-04 14:17:03,889 | INFO     | ..............................
[2025-06-04 10:17:23] 2025-06-04 14:17:03,943 | INFO     | 
[2025-06-04 10:17:23] 2025-06-04 14:17:03,943 | INFO     | job summary report
[2025-06-04 10:17:23] 2025-06-04 14:17:03,943 | INFO     | --------------------------------------------------
[2025-06-04 10:17:23] 2025-06-04 14:17:03,943 | INFO     | PanDA job id: 6679248118
[2025-06-04 10:17:23] 2025-06-04 14:17:03,943 | INFO     | task id: 45006595
[2025-06-04 10:17:23] 2025-06-04 14:17:03,943 | INFO     | errors: (none)
[2025-06-04 10:17:23] 2025-06-04 14:17:03,943 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 10:17:23] 2025-06-04 14:17:03,943 | INFO     | pilot state: finished 
[2025-06-04 10:17:23] 2025-06-04 14:17:03,943 | INFO     | transexitcode: 0
[2025-06-04 10:17:23] 2025-06-04 14:17:03,943 | INFO     | exeerrorcode: 0
[2025-06-04 10:17:23] 2025-06-04 14:17:03,943 | INFO     | exeerrordiag: 
[2025-06-04 10:17:23] 2025-06-04 14:17:03,943 | INFO     | exitcode: 0
[2025-06-04 10:17:23] 2025-06-04 14:17:03,943 | INFO     | exitmsg: OK
[2025-06-04 10:17:23] 2025-06-04 14:17:03,943 | INFO     | cpuconsumptiontime: 35515 s
[2025-06-04 10:17:23] 2025-06-04 14:17:03,943 | INFO     | nevents: 400
[2025-06-04 10:17:23] 2025-06-04 14:17:03,943 | INFO     | neventsw: 0
[2025-06-04 10:17:23] 2025-06-04 14:17:03,943 | INFO     | pid: 309963
[2025-06-04 10:17:23] 2025-06-04 14:17:03,943 | INFO     | pgrp: 309963
[2025-06-04 10:17:23] 2025-06-04 14:17:03,944 | INFO     | corecount: 8
[2025-06-04 10:17:23] 2025-06-04 14:17:03,944 | INFO     | event service: False
[2025-06-04 10:17:23] 2025-06-04 14:17:03,944 | INFO     | sizes: {0: 2397163, 1: 2397362, 5: 2397568, 11: 2397624, 5118: 2423788, 5120: 2432729, 5121: 2432913, 5126: 2433083}
[2025-06-04 10:17:23] 2025-06-04 14:17:03,944 | INFO     | --------------------------------------------------
[2025-06-04 10:17:23] 2025-06-04 14:17:03,944 | INFO     | 
[2025-06-04 10:17:23] 2025-06-04 14:17:03,944 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-06-04 10:17:23] 2025-06-04 14:17:03,968 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 10:17:23] 2025-06-04 14:17:03,969 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 10:17:23] 2025-06-04 14:17:03,969 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 10:17:23] 2025-06-04 14:17:03,969 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 10:17:23] 2025-06-04 14:17:03,969 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 10:17:23] 2025-06-04 14:17:03,969 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 10:17:23] 2025-06-04 14:17:03,969 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 10:17:23] 2025-06-04 14:17:03,969 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 10:17:23] 2025-06-04 14:17:03,969 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 10:17:23] 2025-06-04 14:17:03,969 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 10:17:23] 2025-06-04 14:17:03,969 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 10:17:23] 2025-06-04 14:17:03,969 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 10:17:23] 2025-06-04 14:17:03,969 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 10:17:23] 2025-06-04 14:17:03,969 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 10:17:23] 2025-06-04 14:17:03,969 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 10:17:23] 2025-06-04 14:17:03,969 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 10:17:23] 2025-06-04 14:17:03,969 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 10:17:23] 2025-06-04 14:17:03,969 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 10:17:23] 2025-06-04 14:17:03,970 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 10:17:23] 2025-06-04 14:17:03,970 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 10:17:23] 2025-06-04 14:17:03,970 | INFO     | job 6679248118 has completed (purged errors)
[2025-06-04 10:17:23] 2025-06-04 14:17:03,970 | INFO     | overall cleanup function is called
[2025-06-04 10:17:23] 2025-06-04 14:17:04,976 | INFO     | --- collectZombieJob: --- 10, [309963]
[2025-06-04 10:17:23] 2025-06-04 14:17:04,977 | INFO     | zombie collector waiting for pid 309963
[2025-06-04 10:17:23] 2025-06-04 14:17:04,977 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 10:17:23] 2025-06-04 14:17:04,977 | INFO     | collected zombie processes
[2025-06-04 10:17:23] 2025-06-04 14:17:04,977 | INFO     | will attempt to kill all subprocesses of pid=309963
[2025-06-04 10:17:23] 2025-06-04 14:17:05,169 | INFO     | process IDs to be killed: [309963] (in reverse order)
[2025-06-04 10:17:23] 2025-06-04 14:17:05,605 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 10:17:23] 2025-06-04 14:17:05,606 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 10:17:23] 2025-06-04 14:17:05,616 | INFO     | did not find any defunct processes belonging to 309963
[2025-06-04 10:17:23] 2025-06-04 14:17:05,625 | INFO     | did not find any defunct processes belonging to 309963
[2025-06-04 10:17:23] 2025-06-04 14:17:05,626 | INFO     | ready for new job
[2025-06-04 10:17:23] 2025-06-04 14:17:05,626 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 10:17:23] 2025-06-04 14:17:05,627 | INFO     | **************************************
[2025-06-04 10:17:23] 2025-06-04 14:17:05,627 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 10:17:23] 2025-06-04 14:17:05,628 | INFO     | **************************************
[2025-06-04 10:17:23] 2025-06-04 14:17:05,628 | INFO     | 
[2025-06-04 10:17:23] 2025-06-04 14:17:05,632 | INFO     | architecture information:
[2025-06-04 10:17:23] 2025-06-04 14:17:05,633 | INFO     | executing command: cat /etc/os-release
[2025-06-04 10:17:23] 2025-06-04 14:17:05,655 | INFO     | cat /etc/os-release:
[2025-06-04 10:17:23] NAME="CentOS Linux"
[2025-06-04 10:17:23] VERSION="7 (Core)"
[2025-06-04 10:17:23] ID="centos"
[2025-06-04 10:17:23] ID_LIKE="rhel fedora"
[2025-06-04 10:17:23] VERSION_ID="7"
[2025-06-04 10:17:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 10:17:23] ANSI_COLOR="0;31"
[2025-06-04 10:17:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 10:17:23] HOME_URL="https://www.centos.org/"
[2025-06-04 10:17:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 10:17:23] 
[2025-06-04 10:17:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 10:17:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 10:17:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 10:17:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 10:17:23] 
[2025-06-04 10:17:23] 2025-06-04 14:17:05,655 | INFO     | **************************************
[2025-06-04 10:17:23] 2025-06-04 14:17:06,159 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-06-04 10:17:23] 2025-06-04 14:17:06,181 | INFO     | sufficient remaining disk space (104169734144 B)
[2025-06-04 10:17:23] 2025-06-04 14:17:06,181 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 10:17:23] 2025-06-04 14:17:06,182 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 10:17:23] 2025-06-04 14:17:06,182 | INFO     | update_server=False
[2025-06-04 10:17:23] 2025-06-04 14:17:06,182 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 10:17:23] 2025-06-04 14:17:06,182 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 10:17:23] 2025-06-04 14:17:06,358 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 10:17:23] 2025-06-04 14:17:06,358 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 10:17:23] 2025-06-04 14:17:06,358 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 10:17:23] 2025-06-04 14:17:06,774 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:17:23] 2025-06-04 14:17:06,775 | INFO     | aborting loop
[2025-06-04 10:17:23] 2025-06-04 14:17:06,892 | INFO     | all data control threads have been joined
[2025-06-04 10:17:23] 2025-06-04 14:17:07,187 | INFO     | [job] retrieve thread has finished
[2025-06-04 10:17:23] 2025-06-04 14:17:07,207 | INFO     | all payload control threads have been joined
[2025-06-04 10:17:23] 2025-06-04 14:17:07,308 | INFO     | all job control threads have been joined
[2025-06-04 10:17:23] 2025-06-04 14:17:07,660 | INFO     | [payload] failed_post thread has finished
[2025-06-04 10:17:23] 2025-06-04 14:17:07,776 | INFO     | [job] job monitor thread has finished
[2025-06-04 10:17:23] 2025-06-04 14:17:07,854 | INFO     | [payload] validate_post thread has finished
[2025-06-04 10:17:23] 2025-06-04 14:17:07,898 | INFO     | [data] control thread has finished
[2025-06-04 10:17:23] 2025-06-04 14:17:08,065 | INFO     | [job] validate thread has finished
[2025-06-04 10:17:23] 2025-06-04 14:17:08,131 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 10:17:23] 2025-06-04 14:17:08,188 | INFO     | [data] copytool_out thread has finished
[2025-06-04 10:17:23] 2025-06-04 14:17:08,211 | INFO     | [payload] control thread has finished
[2025-06-04 10:17:23] 2025-06-04 14:17:08,310 | INFO     | [data] copytool_in thread has finished
[2025-06-04 10:17:23] 2025-06-04 14:17:08,313 | INFO     | [job] control thread has finished
[2025-06-04 10:17:23] 2025-06-04 14:17:08,334 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 10:17:23] 2025-06-04 14:17:08,528 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 10:17:23] 2025-06-04 14:17:08,865 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 10:17:23] 2025-06-04 14:17:08,952 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:17:23] 2025-06-04 14:17:09,957 | INFO     | [job] queue monitor thread has finished
[2025-06-04 10:17:23] 2025-06-04 14:17:12,870 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 10:17:23] 2025-06-04 14:17:16,723 | INFO     | job.realtimelogging is not enabled
[2025-06-04 10:17:23] 2025-06-04 14:17:17,725 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 10:17:23] 2025-06-04 14:17:17,999 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139704792725312)>', '<ExcThread(monitor, started 139704120887040)>']
[2025-06-04 10:17:23] 2025-06-04 14:17:18,405 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 10:17:23] 2025-06-04 14:17:18,406 | INFO     | [monitor] control thread has ended
[2025-06-04 10:17:23] 2025-06-04 14:17:23,023 | INFO     | all workflow threads have been joined
[2025-06-04 10:17:23] 2025-06-04 14:17:23,024 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 10:17:23] 2025-06-04 14:17:23,024 | INFO     | traces error code: 0
[2025-06-04 10:17:23] 2025-06-04 14:17:23,024 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 10:17:23] 2025-06-04 14:17:23,175 [wrapper] ==== pilot stdout END ====
[2025-06-04 10:17:23] 2025-06-04 14:17:23,177 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 10:17:23] 2025-06-04 14:17:23,180 [wrapper] pilotpid: 303453
[2025-06-04 10:17:23] 2025-06-04 14:17:23,182 [wrapper] Pilot exit status: 0
[2025-06-04 10:17:23] 2025-06-04 14:17:23,192 [wrapper] pandaids: 6679248118
[2025-06-04 10:17:23] 2025-06-04 14:17:23,261 [wrapper] cleanup supervisor_pilot 210111 303454
[2025-06-04 10:17:23] 2025-06-04 14:17:23,286 [wrapper] Test setup, not cleaning
[2025-06-04 10:17:23] 2025-06-04 14:17:23,288 [wrapper] apfmon messages muted
[2025-06-04 10:17:23] 2025-06-04 14:17:23,290 [wrapper] ==== wrapper stdout END ====
[2025-06-04 10:17:23] 2025-06-04 14:17:23,293 [wrapper] ==== wrapper stderr END ====
[2025-06-04 10:17:23]  *** Error codes and diagnostics ***
[2025-06-04 10:17:23]     "exeErrorCode": 0,
[2025-06-04 10:17:23]     "exeErrorDiag": "",
[2025-06-04 10:17:23]     "pilotErrorCode": 0,
[2025-06-04 10:17:23]     "pilotErrorDiag": "",
[2025-06-04 10:17:23]  *** Listing of results directory ***
[2025-06-04 10:17:23] total 385604
[2025-06-04 10:17:23] -rw-r--r-- 1 boincer umatlas    495897 Jun  4 04:46 pilot3.tar.gz
[2025-06-04 10:17:23] -rwx------ 1 boincer umatlas     37140 Jun  4 04:56 runpilot2-wrapper.sh
[2025-06-04 10:17:23] -rw-r--r-- 1 boincer umatlas      5111 Jun  4 04:56 queuedata.json
[2025-06-04 10:17:23] -rw-r--r-- 1 boincer umatlas       100 Jun  4 08:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 10:17:23] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 08:51 run_atlas
[2025-06-04 10:17:23] -rw-r--r-- 1 boincer umatlas       105 Jun  4 08:51 job.xml
[2025-06-04 10:17:23] -rw-r--r-- 2 boincer umatlas 214622947 Jun  4 08:51 EVNT.45006593._000085.pool.root.1
[2025-06-04 10:17:23] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 08:51 start_atlas.sh
[2025-06-04 10:17:23] drwxrwx--x 2 boincer umatlas      4096 Jun  4 08:51 shared
[2025-06-04 10:17:23] -rw-r--r-- 2 boincer umatlas    508869 Jun  4 08:51 input.tar.gz
[2025-06-04 10:17:23] -rw-r--r-- 1 boincer umatlas         0 Jun  4 08:51 boinc_lockfile
[2025-06-04 10:17:23] -rw-r--r-- 1 boincer umatlas      2521 Jun  4 08:51 pandaJob.out
[2025-06-04 10:17:23] -rw------- 1 boincer umatlas    986811 Jun  4 08:51 agis_schedconf.cvmfs.json
[2025-06-04 10:17:23] -rw------- 1 boincer umatlas   1598969 Jun  4 08:51 agis_ddmendpoints.agis.ALL.json
[2025-06-04 10:17:23] drwx------ 4 boincer umatlas      4096 Jun  4 08:51 pilot3
[2025-06-04 10:17:23] -rw-r--r-- 1 boincer umatlas      6298 Jun  4 10:11 init_data.xml
[2025-06-04 10:17:23] -rw------- 1 boincer umatlas 174781754 Jun  4 10:16 HITS.45006595._056055.pool.root.1
[2025-06-04 10:17:23] -rw-r--r-- 1 boincer umatlas       529 Jun  4 10:16 boinc_task_state.xml
[2025-06-04 10:17:23] -rw------- 1 boincer umatlas        95 Jun  4 10:16 pilot_heartbeat.json
[2025-06-04 10:17:23] -rw------- 1 boincer umatlas      1048 Jun  4 10:16 memory_monitor_summary.json
[2025-06-04 10:17:23] -rw------- 1 boincer umatlas    307612 Jun  4 10:16 log.45006595._056055.job.log.tgz.1
[2025-06-04 10:17:23] -rw------- 1 boincer umatlas      7736 Jun  4 10:17 heartbeat.json
[2025-06-04 10:17:23] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 10:17 boinc_mmap_file
[2025-06-04 10:17:23] -rw-r--r-- 1 boincer umatlas        27 Jun  4 10:17 wrapper_checkpoint.txt
[2025-06-04 10:17:23] -rw------- 1 boincer umatlas      4426 Jun  4 10:17 pilotlog.txt
[2025-06-04 10:17:23] -rw------- 1 boincer umatlas    500263 Jun  4 10:17 log.45006595._056055.job.log.1
[2025-06-04 10:17:23] -rw------- 1 boincer umatlas       357 Jun  4 10:17 output.list
[2025-06-04 10:17:23] -rw-r--r-- 1 boincer umatlas       620 Jun  4 10:17 runtime_log
[2025-06-04 10:17:23] -rw------- 1 boincer umatlas    829440 Jun  4 10:17 result.tar.gz
[2025-06-04 10:17:23] -rw-r--r-- 1 boincer umatlas      8669 Jun  4 10:17 runtime_log.err
[2025-06-04 10:17:23] -rw------- 1 boincer umatlas       658 Jun  4 10:17 grHMDm45yg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgrnKDmdC7Ovn.diag
[2025-06-04 10:17:23] -rw-r--r-- 1 boincer umatlas     21287 Jun  4 10:17 stderr.txt
[2025-06-04 10:17:23] HITS file was successfully produced:
[2025-06-04 10:17:23] -rw------- 1 boincer umatlas 174781754 Jun  4 10:16 shared/HITS.pool.root.1
[2025-06-04 10:17:23]  *** Contents of shared directory: ***
[2025-06-04 10:17:23] total 381616
[2025-06-04 10:17:23] -rw-r--r-- 2 boincer umatlas 214622947 Jun  4 08:51 ATLAS.root_0
[2025-06-04 10:17:23] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 08:51 start_atlas.sh
[2025-06-04 10:17:23] -rw-r--r-- 2 boincer umatlas    508869 Jun  4 08:51 input.tar.gz
[2025-06-04 10:17:23] -rw------- 1 boincer umatlas 174781754 Jun  4 10:16 HITS.pool.root.1
[2025-06-04 10:17:23] -rw------- 1 boincer umatlas    829440 Jun  4 10:17 result.tar.gz
10:17:24 (299879): run_atlas exited; CPU time 35640.606621
10:17:24 (299879): called boinc_finish(0)

</stderr_txt>
]]>

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