Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:43:29 (2441302): wrapper (7.7.26015): starting
08:43:29 (2441302): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 08:43:29] Arguments: --nthreads 8
[2025-06-04 08:43:29] Threads: 8
[2025-06-04 08:43:29] Checking for CVMFS
[2025-06-04 08:43:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 08:43:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 08:43:29] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 08:43:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 08:43:29] 2.12.6.0 8999 37321 500740 146780 1 201 22806422 32935937 15197 16776704 1 163775107 99.590 181708365 25470 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 08:43:29] CVMFS is ok
[2025-06-04 08:43:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 08:43:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 08:43:29] Further information can be found at the LHC@home message board.
[2025-06-04 08:43:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 08:43:29] Checking for apptainer binary...
[2025-06-04 08:43:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 08:43:29] Running /usr/bin/apptainer --version
[2025-06-04 08:43:29] apptainer version 1.4.1-1.el9
[2025-06-04 08:43:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 08:43:30] c7-11-16.aglt2.org
[2025-06-04 08:43:30] apptainer works
[2025-06-04 08:43:30] Set ATHENA_PROC_NUMBER=8
[2025-06-04 08:43:30] Set ATHENA_CORE_NUMBER=8
[2025-06-04 08:43:30] Starting ATLAS job with PandaID=6679100190
[2025-06-04 08:43:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 09:51:35]  *** The last 200 lines of the pilot log: ***
[2025-06-04 09:51:35]  is_altstaged=None
[2025-06-04 09:51:35]  is_tar=False
[2025-06-04 09:51:35]  lfn=log.45006595._055826.job.log.tgz.1
[2025-06-04 09:51:35]  mtime=0
[2025-06-04 09:51:35]  protocol_id=None
[2025-06-04 09:51:35]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 09:51:35]  replicas=None
[2025-06-04 09:51:35]  scope=mc23_13p6TeV
[2025-06-04 09:51:35]  status=None
[2025-06-04 09:51:35]  status_code=0
[2025-06-04 09:51:35]  storage_token=
[2025-06-04 09:51:35]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6679100190/log.45006595._055826.job.log.tgz.1
[2025-06-04 09:51:35]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ae/db/log.45006595._055826.job.log.tgz.1
[2025-06-04 09:51:35]  workdir=None
[2025-06-04 09:51:35] ]
[2025-06-04 09:51:35] 2025-06-04 13:51:08,648 | INFO     | transferring file log.45006595._055826.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6679100190/log.45006595._055826.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 09:51:35] 2025-06-04 13:51:08,648 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6679100190/log.45006595._055826.job.log.tgz.1 /tmp/boinchome/slots/1/log.45006595._055826.job
[2025-06-04 09:51:35] 2025-06-04 13:51:08,668 | INFO     | adding to output.list: log.45006595._055826.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ae/db/log.45006595._055826.job.log.tg
[2025-06-04 09:51:35] 2025-06-04 13:51:08,669 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 09:51:35] 2025-06-04 13:51:08,669 | INFO     | summary of transferred files:
[2025-06-04 09:51:35] 2025-06-04 13:51:08,669 | INFO     |  -- lfn=log.45006595._055826.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 09:51:35] 2025-06-04 13:51:08,669 | INFO     | stage-out finished correctly
[2025-06-04 09:51:35] 2025-06-04 13:51:08,748 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 09:51:35] 2025-06-04 13:51:10,193 | INFO     | job 6679100190 has state=finished
[2025-06-04 09:51:35] 2025-06-04 13:51:10,193 | INFO     | preparing for final server update for job 6679100190 in state='finished'
[2025-06-04 09:51:35] 2025-06-04 13:51:10,194 | INFO     | this job has now completed (state=finished)
[2025-06-04 09:51:35] 2025-06-04 13:51:10,194 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 09:51:35] 2025-06-04 13:51:10,194 | INFO     | log transfer has been attempted: DONE
[2025-06-04 09:51:35] 2025-06-04 13:51:10,194 | INFO     | job 6679100190 has finished - writing final server update
[2025-06-04 09:51:35] 2025-06-04 13:51:10,195 | INFO     | total number of processed events: 400 (read)
[2025-06-04 09:51:35] 2025-06-04 13:51:10,211 | INFO     | executing command: lscpu
[2025-06-04 09:51:35] 2025-06-04 13:51:10,271 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 09:51:35] 2025-06-04 13:51:12,356 | INFO     | PID=2445279 has CPU usage=8.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 09:51:35] 2025-06-04 13:51:12,356 | INFO     | .. there are 22 such processes running
[2025-06-04 09:51:35] 2025-06-04 13:51:13,826 | WARNING  | process 2451869 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 09:51:35] 2025-06-04 13:51:13,826 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6679100190/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:51:35] 2025-06-04 13:51:14,136 | INFO     | number of running child processes to parent process 2451869: 1
[2025-06-04 09:51:35] 2025-06-04 13:51:14,136 | INFO     | maximum number of monitored processes: 6
[2025-06-04 09:51:35] 2025-06-04 13:51:14,348 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 09:51:35] 2025-06-04 13:51:14,348 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6679100190/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:51:35] 2025-06-04 13:51:14,349 | INFO     | extracted standard info from prmon json
[2025-06-04 09:51:35] 2025-06-04 13:51:14,349 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 09:51:35] 2025-06-04 13:51:14,349 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 09:51:35] 2025-06-04 13:51:14,349 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 09:51:35] 2025-06-04 13:51:14,349 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 09:51:35] 2025-06-04 13:51:14,351 | INFO     | fitting pss+swap vs Time
[2025-06-04 09:51:35] 2025-06-04 13:51:14,351 | INFO     | sum of square deviations: 63666310.0
[2025-06-04 09:51:35] 2025-06-04 13:51:14,351 | INFO     | sum of deviations: 3092479241.0000005
[2025-06-04 09:51:35] 2025-06-04 13:51:14,351 | INFO     | mean x: 1749043121.0
[2025-06-04 09:51:35] 2025-06-04 13:51:14,351 | INFO     | mean y: 2192638.915254237
[2025-06-04 09:51:35] 2025-06-04 13:51:14,351 | INFO     | -- intersect: -84954506489.81316
[2025-06-04 09:51:35] 2025-06-04 13:51:14,351 | INFO     | intersect: -84954506489.81316
[2025-06-04 09:51:35] 2025-06-04 13:51:14,351 | INFO     | chi2: 0.7761941742406837
[2025-06-04 09:51:35] 2025-06-04 13:51:14,352 | INFO     | -- intersect: -84954506489.81316
[2025-06-04 09:51:35] 2025-06-04 13:51:14,352 | INFO     | current memory leak: 48.57 B/s (using 59 data points, chi2=0.78)
[2025-06-04 09:51:35] 2025-06-04 13:51:14,352 | INFO     | ..............................
[2025-06-04 09:51:35] 2025-06-04 13:51:14,352 | INFO     | . Timing measurements:
[2025-06-04 09:51:35] 2025-06-04 13:51:14,352 | INFO     | . get job = 0 s
[2025-06-04 09:51:35] 2025-06-04 13:51:14,352 | INFO     | . initial setup = 2 s
[2025-06-04 09:51:35] 2025-06-04 13:51:14,352 | INFO     | . payload setup = 6 s
[2025-06-04 09:51:35] 2025-06-04 13:51:14,352 | INFO     | . stage-in = 0 s
[2025-06-04 09:51:35] 2025-06-04 13:51:14,352 | INFO     | . payload execution = 4022 s
[2025-06-04 09:51:35] 2025-06-04 13:51:14,352 | INFO     | . stage-out = 0 s
[2025-06-04 09:51:35] 2025-06-04 13:51:14,352 | INFO     | . log creation = 0 s
[2025-06-04 09:51:35] 2025-06-04 13:51:14,353 | INFO     | ..............................
[2025-06-04 09:51:35] 2025-06-04 13:51:14,659 | INFO     | 
[2025-06-04 09:51:35] 2025-06-04 13:51:14,659 | INFO     | job summary report
[2025-06-04 09:51:35] 2025-06-04 13:51:14,659 | INFO     | --------------------------------------------------
[2025-06-04 09:51:35] 2025-06-04 13:51:14,659 | INFO     | PanDA job id: 6679100190
[2025-06-04 09:51:35] 2025-06-04 13:51:14,659 | INFO     | task id: 45006595
[2025-06-04 09:51:35] 2025-06-04 13:51:14,659 | INFO     | errors: (none)
[2025-06-04 09:51:35] 2025-06-04 13:51:14,659 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 09:51:35] 2025-06-04 13:51:14,659 | INFO     | pilot state: finished 
[2025-06-04 09:51:35] 2025-06-04 13:51:14,659 | INFO     | transexitcode: 0
[2025-06-04 09:51:35] 2025-06-04 13:51:14,659 | INFO     | exeerrorcode: 0
[2025-06-04 09:51:35] 2025-06-04 13:51:14,659 | INFO     | exeerrordiag: 
[2025-06-04 09:51:35] 2025-06-04 13:51:14,659 | INFO     | exitcode: 0
[2025-06-04 09:51:35] 2025-06-04 13:51:14,660 | INFO     | exitmsg: OK
[2025-06-04 09:51:35] 2025-06-04 13:51:14,660 | INFO     | cpuconsumptiontime: 26938 s
[2025-06-04 09:51:35] 2025-06-04 13:51:14,660 | INFO     | nevents: 400
[2025-06-04 09:51:35] 2025-06-04 13:51:14,660 | INFO     | neventsw: 0
[2025-06-04 09:51:35] 2025-06-04 13:51:14,660 | INFO     | pid: 2451869
[2025-06-04 09:51:35] 2025-06-04 13:51:14,660 | INFO     | pgrp: 2451869
[2025-06-04 09:51:35] 2025-06-04 13:51:14,660 | INFO     | corecount: 8
[2025-06-04 09:51:35] 2025-06-04 13:51:14,660 | INFO     | event service: False
[2025-06-04 09:51:35] 2025-06-04 13:51:14,660 | INFO     | sizes: {0: 2397117, 1: 2397316, 5: 2397522, 11: 2397578, 4033: 2423458, 4034: 2432583, 4039: 2432697}
[2025-06-04 09:51:35] 2025-06-04 13:51:14,660 | INFO     | --------------------------------------------------
[2025-06-04 09:51:35] 2025-06-04 13:51:14,660 | INFO     | 
[2025-06-04 09:51:35] 2025-06-04 13:51:14,660 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-04 09:51:35] 2025-06-04 13:51:14,682 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 09:51:35] 2025-06-04 13:51:14,683 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 09:51:35] 2025-06-04 13:51:14,683 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 09:51:35] 2025-06-04 13:51:14,683 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 09:51:35] 2025-06-04 13:51:14,683 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 09:51:35] 2025-06-04 13:51:14,683 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 09:51:35] 2025-06-04 13:51:14,683 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 09:51:35] 2025-06-04 13:51:14,683 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 09:51:35] 2025-06-04 13:51:14,683 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 09:51:35] 2025-06-04 13:51:14,683 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 09:51:35] 2025-06-04 13:51:14,683 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 09:51:35] 2025-06-04 13:51:14,683 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 09:51:35] 2025-06-04 13:51:14,683 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 09:51:35] 2025-06-04 13:51:14,683 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 09:51:35] 2025-06-04 13:51:14,683 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 09:51:35] 2025-06-04 13:51:14,684 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 09:51:35] 2025-06-04 13:51:14,684 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 09:51:35] 2025-06-04 13:51:14,684 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 09:51:35] 2025-06-04 13:51:14,684 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 09:51:35] 2025-06-04 13:51:14,684 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 09:51:35] 2025-06-04 13:51:14,684 | INFO     | job 6679100190 has completed (purged errors)
[2025-06-04 09:51:35] 2025-06-04 13:51:14,684 | INFO     | overall cleanup function is called
[2025-06-04 09:51:35] 2025-06-04 13:51:15,366 | INFO     | 4058s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-04 09:51:35] 2025-06-04 13:51:15,692 | INFO     | --- collectZombieJob: --- 10, [2451869]
[2025-06-04 09:51:35] 2025-06-04 13:51:15,692 | INFO     | zombie collector waiting for pid 2451869
[2025-06-04 09:51:35] 2025-06-04 13:51:15,692 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 09:51:35] 2025-06-04 13:51:15,692 | INFO     | collected zombie processes
[2025-06-04 09:51:35] 2025-06-04 13:51:15,693 | INFO     | will attempt to kill all subprocesses of pid=2451869
[2025-06-04 09:51:35] 2025-06-04 13:51:15,999 | INFO     | process IDs to be killed: [2451869] (in reverse order)
[2025-06-04 09:51:35] 2025-06-04 13:51:16,121 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 09:51:35] 2025-06-04 13:51:16,121 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 09:51:35] 2025-06-04 13:51:16,139 | INFO     | did not find any defunct processes belonging to 2451869
[2025-06-04 09:51:35] 2025-06-04 13:51:16,155 | INFO     | did not find any defunct processes belonging to 2451869
[2025-06-04 09:51:35] 2025-06-04 13:51:16,155 | INFO     | ready for new job
[2025-06-04 09:51:35] 2025-06-04 13:51:16,156 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 09:51:35] 2025-06-04 13:51:16,157 | INFO     | **************************************
[2025-06-04 09:51:35] 2025-06-04 13:51:16,158 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 09:51:35] 2025-06-04 13:51:16,158 | INFO     | **************************************
[2025-06-04 09:51:35] 2025-06-04 13:51:16,158 | INFO     | 
[2025-06-04 09:51:35] 2025-06-04 13:51:16,161 | INFO     | architecture information:
[2025-06-04 09:51:35] 2025-06-04 13:51:16,162 | INFO     | executing command: cat /etc/os-release
[2025-06-04 09:51:35] 2025-06-04 13:51:16,181 | INFO     | cat /etc/os-release:
[2025-06-04 09:51:35] NAME="CentOS Linux"
[2025-06-04 09:51:35] VERSION="7 (Core)"
[2025-06-04 09:51:35] ID="centos"
[2025-06-04 09:51:35] ID_LIKE="rhel fedora"
[2025-06-04 09:51:35] VERSION_ID="7"
[2025-06-04 09:51:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 09:51:35] ANSI_COLOR="0;31"
[2025-06-04 09:51:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 09:51:35] HOME_URL="https://www.centos.org/"
[2025-06-04 09:51:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 09:51:35] 
[2025-06-04 09:51:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 09:51:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 09:51:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 09:51:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 09:51:35] 
[2025-06-04 09:51:35] 2025-06-04 13:51:16,181 | INFO     | **************************************
[2025-06-04 09:51:35] 2025-06-04 13:51:16,685 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-04 09:51:35] 2025-06-04 13:51:16,705 | INFO     | sufficient remaining disk space (96062144512 B)
[2025-06-04 09:51:35] 2025-06-04 13:51:16,706 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 09:51:35] 2025-06-04 13:51:16,706 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 09:51:35] 2025-06-04 13:51:16,706 | INFO     | update_server=False
[2025-06-04 09:51:35] 2025-06-04 13:51:16,706 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 09:51:35] 2025-06-04 13:51:16,706 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 09:51:35] 2025-06-04 13:51:16,707 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 09:51:35] 2025-06-04 13:51:16,707 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 09:51:35] 2025-06-04 13:51:16,707 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 09:51:35] 2025-06-04 13:51:16,743 | INFO     | all data control threads have been joined
[2025-06-04 09:51:35] 2025-06-04 13:51:16,759 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 09:51:35] 2025-06-04 13:51:16,841 | INFO     | all payload control threads have been joined
[2025-06-04 09:51:35] 2025-06-04 13:51:17,644 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:51:35] 2025-06-04 13:51:17,644 | INFO     | aborting loop
[2025-06-04 09:51:35] 2025-06-04 13:51:17,712 | INFO     | [job] retrieve thread has finished
[2025-06-04 09:51:35] 2025-06-04 13:51:17,748 | INFO     | [data] control thread has finished
[2025-06-04 09:51:35] 2025-06-04 13:51:17,848 | INFO     | [payload] control thread has finished
[2025-06-04 09:51:35] 2025-06-04 13:51:17,893 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 09:51:35] 2025-06-04 13:51:18,027 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 09:51:35] 2025-06-04 13:51:18,168 | INFO     | all job control threads have been joined
[2025-06-04 09:51:35] 2025-06-04 13:51:18,210 | INFO     | [payload] failed_post thread has finished
[2025-06-04 09:51:35] 2025-06-04 13:51:18,648 | INFO     | [job] job monitor thread has finished
[2025-06-04 09:51:35] 2025-06-04 13:51:18,698 | INFO     | [payload] validate_post thread has finished
[2025-06-04 09:51:35] 2025-06-04 13:51:18,765 | INFO     | [data] copytool_out thread has finished
[2025-06-04 09:51:35] 2025-06-04 13:51:18,830 | INFO     | [job] validate thread has finished
[2025-06-04 09:51:35] 2025-06-04 13:51:18,938 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 09:51:35] 2025-06-04 13:51:18,986 | INFO     | [data] copytool_in thread has finished
[2025-06-04 09:51:35] 2025-06-04 13:51:19,174 | INFO     | [job] control thread has finished
[2025-06-04 09:51:35] 2025-06-04 13:51:19,330 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 09:51:35] 2025-06-04 13:51:19,434 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:51:35] 2025-06-04 13:51:20,439 | INFO     | [job] queue monitor thread has finished
[2025-06-04 09:51:35] 2025-06-04 13:51:23,337 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 09:51:35] 2025-06-04 13:51:27,390 | INFO     | job.realtimelogging is not enabled
[2025-06-04 09:51:35] 2025-06-04 13:51:28,396 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 09:51:35] 2025-06-04 13:51:30,196 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139755194554176)>', '<ExcThread(monitor, started 139754830010112)>']
[2025-06-04 09:51:35] 2025-06-04 13:51:30,775 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 09:51:35] 2025-06-04 13:51:30,775 | INFO     | [monitor] control thread has ended
[2025-06-04 09:51:35] 2025-06-04 13:51:35,223 | INFO     | all workflow threads have been joined
[2025-06-04 09:51:35] 2025-06-04 13:51:35,223 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 09:51:35] 2025-06-04 13:51:35,223 | INFO     | traces error code: 0
[2025-06-04 09:51:35] 2025-06-04 13:51:35,224 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 09:51:35] 2025-06-04 13:51:35,362 [wrapper] ==== pilot stdout END ====
[2025-06-04 09:51:35] 2025-06-04 13:51:35,365 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 09:51:35] 2025-06-04 13:51:35,369 [wrapper] pilotpid: 2445279
[2025-06-04 09:51:35] 2025-06-04 13:51:35,372 [wrapper] Pilot exit status: 0
[2025-06-04 09:51:35] 2025-06-04 13:51:35,385 [wrapper] pandaids: 6679100190
[2025-06-04 09:51:35] 2025-06-04 13:51:35,471 [wrapper] cleanup supervisor_pilot 2653517 2445280
[2025-06-04 09:51:35] 2025-06-04 13:51:35,474 [wrapper] Test setup, not cleaning
[2025-06-04 09:51:35] 2025-06-04 13:51:35,477 [wrapper] apfmon messages muted
[2025-06-04 09:51:35] 2025-06-04 13:51:35,480 [wrapper] ==== wrapper stdout END ====
[2025-06-04 09:51:35] 2025-06-04 13:51:35,482 [wrapper] ==== wrapper stderr END ====
[2025-06-04 09:51:35]  *** Error codes and diagnostics ***
[2025-06-04 09:51:35]     "exeErrorCode": 0,
[2025-06-04 09:51:35]     "exeErrorDiag": "",
[2025-06-04 09:51:35]     "pilotErrorCode": 0,
[2025-06-04 09:51:35]     "pilotErrorDiag": "",
[2025-06-04 09:51:35]  *** Listing of results directory ***
[2025-06-04 09:51:35] total 380716
[2025-06-04 09:51:35] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 04:45 queuedata.json
[2025-06-04 09:51:35] -rwx------. 1 boincer umatlas     37140 Jun  4 04:46 runpilot2-wrapper.sh
[2025-06-04 09:51:35] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 04:46 pilot3.tar.gz
[2025-06-04 09:51:35] -rw-r--r--. 1 boincer umatlas       100 Jun  4 08:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 09:51:35] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 08:43 run_atlas
[2025-06-04 09:51:35] -rw-r--r--. 1 boincer umatlas       105 Jun  4 08:43 job.xml
[2025-06-04 09:51:35] -rw-r--r--. 2 boincer umatlas 213294697 Jun  4 08:43 EVNT.45006593._000618.pool.root.1
[2025-06-04 09:51:35] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 08:43 start_atlas.sh
[2025-06-04 09:51:35] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 08:43 shared
[2025-06-04 09:51:35] -rw-r--r--. 2 boincer umatlas    508875 Jun  4 08:43 input.tar.gz
[2025-06-04 09:51:35] -rw-r--r--. 1 boincer umatlas         0 Jun  4 08:43 boinc_lockfile
[2025-06-04 09:51:35] -rw-r--r--. 1 boincer umatlas      2523 Jun  4 08:43 pandaJob.out
[2025-06-04 09:51:35] -rw-------. 1 boincer umatlas    986811 Jun  4 08:43 agis_schedconf.cvmfs.json
[2025-06-04 09:51:35] -rw-------. 1 boincer umatlas   1598969 Jun  4 08:43 agis_ddmendpoints.agis.ALL.json
[2025-06-04 09:51:35] drwx------. 4 boincer umatlas      4096 Jun  4 08:43 pilot3
[2025-06-04 09:51:35] -rw-r--r--. 1 boincer umatlas      6898 Jun  4 09:46 init_data.xml
[2025-06-04 09:51:35] -rw-------. 1 boincer umatlas 171336570 Jun  4 09:50 HITS.45006595._055826.pool.root.1
[2025-06-04 09:51:35] -rw-r--r--. 1 boincer umatlas       529 Jun  4 09:50 boinc_task_state.xml
[2025-06-04 09:51:35] -rw-------. 1 boincer umatlas        95 Jun  4 09:51 pilot_heartbeat.json
[2025-06-04 09:51:35] -rw-------. 1 boincer umatlas      1026 Jun  4 09:51 memory_monitor_summary.json
[2025-06-04 09:51:35] -rw-------. 1 boincer umatlas    284617 Jun  4 09:51 log.45006595._055826.job.log.tgz.1
[2025-06-04 09:51:35] -rw-------. 1 boincer umatlas      7681 Jun  4 09:51 heartbeat.json
[2025-06-04 09:51:35] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 09:51 boinc_mmap_file
[2025-06-04 09:51:35] -rw-------. 1 boincer umatlas      4548 Jun  4 09:51 pilotlog.txt
[2025-06-04 09:51:35] -rw-------. 1 boincer umatlas    408810 Jun  4 09:51 log.45006595._055826.job.log.1
[2025-06-04 09:51:35] -rw-------. 1 boincer umatlas       357 Jun  4 09:51 output.list
[2025-06-04 09:51:35] -rw-r--r--. 1 boincer umatlas       620 Jun  4 09:51 runtime_log
[2025-06-04 09:51:35] -rw-------. 1 boincer umatlas    716800 Jun  4 09:51 result.tar.gz
[2025-06-04 09:51:35] -rw-r--r--. 1 boincer umatlas      8659 Jun  4 09:51 runtime_log.err
[2025-06-04 09:51:35] -rw-------. 1 boincer umatlas       651 Jun  4 09:51 BYGMDmwwyg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmCpnKDmNkU8Pm.diag
[2025-06-04 09:51:35] -rw-r--r--. 1 boincer umatlas     21492 Jun  4 09:51 stderr.txt
[2025-06-04 09:51:35] -rw-r--r--. 1 boincer umatlas        27 Jun  4 09:51 wrapper_checkpoint.txt
[2025-06-04 09:51:35] HITS file was successfully produced:
[2025-06-04 09:51:35] -rw-------. 1 boincer umatlas 171336570 Jun  4 09:50 shared/HITS.pool.root.1
[2025-06-04 09:51:35]  *** Contents of shared directory: ***
[2025-06-04 09:51:35] total 376844
[2025-06-04 09:51:35] -rw-r--r--. 2 boincer umatlas 213294697 Jun  4 08:43 ATLAS.root_0
[2025-06-04 09:51:35] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 08:43 start_atlas.sh
[2025-06-04 09:51:35] -rw-r--r--. 2 boincer umatlas    508875 Jun  4 08:43 input.tar.gz
[2025-06-04 09:51:35] -rw-------. 1 boincer umatlas 171336570 Jun  4 09:50 HITS.pool.root.1
[2025-06-04 09:51:35] -rw-------. 1 boincer umatlas    716800 Jun  4 09:51 result.tar.gz
09:51:37 (2441302): run_atlas exited; CPU time 26983.540993
09:51:37 (2441302): called boinc_finish(0)

</stderr_txt>
]]>

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